RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 FANCAO15360 1455 aa26.41■■□□□ 1.82
CLN3-256ENST00000637107 PREX2Q70Z35 1606 aa26.41■■□□□ 1.82
CLN3-256ENST00000637107 ARHGAP5Q13017 1502 aa26.39■■□□□ 1.82
CLN3-256ENST00000637107 ARAP3Q8WWN8 1544 aa26.38■■□□□ 1.81
CLN3-256ENST00000637107 EFCAB2Q5VUJ9 269 aa26.35■■□□□ 1.81
CLN3-256ENST00000637107 NEO1Q92859 1461 aa26.35■■□□□ 1.81
CLN3-256ENST00000637107 CFDP1Q9UEE9 299 aaPredicted RBP26.33■■□□□ 1.81
CLN3-256ENST00000637107 COL17A1Q9UMD9 1497 aaPredicted RBP26.33■■□□□ 1.81
CLN3-256ENST00000637107 AKNAQ7Z591 1439 aa26.33■■□□□ 1.81
CLN3-256ENST00000637107 ZEB1P37275 1124 aaPredicted RBP26.33■■□□□ 1.81
CLN3-256ENST00000637107 PHLDB1Q86UU1 1377 aa26.32■■□□□ 1.8
CLN3-256ENST00000637107 ITSN2Q9NZM3 1697 aa26.32■■□□□ 1.8
CLN3-256ENST00000637107 CFAP74Q9C0B2 1584 aa26.32■■□□□ 1.8
CLN3-256ENST00000637107 ZNF777Q9ULD5 760 aaPredicted RBP26.31■■□□□ 1.8
CLN3-256ENST00000637107 KDM6BO15054 1643 aa26.3■■□□□ 1.8
CLN3-256ENST00000637107 MYOM3Q5VTT5 1437 aa26.28■■□□□ 1.8
CLN3-256ENST00000637107 ADGRL1O94910 1474 aa26.27■■□□□ 1.8
CLN3-256ENST00000637107 ZNF644Q9H582 1327 aaPredicted RBP26.26■■□□□ 1.8
CLN3-256ENST00000637107 SAMD9LQ8IVG5 1584 aa26.26■■□□□ 1.79
CLN3-256ENST00000637107 SCAPERQ9BY12 1400 aa26.24■■□□□ 1.79
CLN3-256ENST00000637107 RAPGEF3O95398 923 aa26.24■■□□□ 1.79
CLN3-256ENST00000637107 ABCC1P33527 1531 aa26.21■■□□□ 1.79
CLN3-256ENST00000637107 ARHGEF12Q9NZN5 1544 aa26.21■■□□□ 1.79
CLN3-256ENST00000637107 MIA2Q96PC5 1412 aa26.19■■□□□ 1.78
CLN3-256ENST00000637107 DENND4BO75064 1496 aaPredicted RBP26.19■■□□□ 1.78
CLN3-256ENST00000637107 HNRNPMP52272 730 aaKnown RBP eCLIP26.18■■□□□ 1.78
CLN3-256ENST00000637107 SYCP2Q9BX26 1530 aa26.18■■□□□ 1.78
CLN3-256ENST00000637107 CAMSAP2Q08AD1 1489 aa26.18■■□□□ 1.78
CLN3-256ENST00000637107 FGD6Q6ZV73 1430 aa26.17■■□□□ 1.78
CLN3-256ENST00000637107 FRMPD1Q5SYB0 1578 aa26.17■■□□□ 1.78
CLN3-256ENST00000637107 RICTORQ6R327 1708 aa26.16■■□□□ 1.78
CLN3-256ENST00000637107 AFAP1Q8N556 730 aa26.15■■□□□ 1.78
CLN3-256ENST00000637107 POGZQ7Z3K3 1410 aa26.15■■□□□ 1.78
CLN3-256ENST00000637107 TRAPPC8Q9Y2L5 1435 aa26.15■■□□□ 1.78
CLN3-256ENST00000637107 KIAA1107Q9UPP5 1409 aa26.14■■□□□ 1.78
CLN3-256ENST00000637107 PTPN23Q9H3S7 1636 aa26.13■■□□□ 1.77
CLN3-256ENST00000637107 PLEKHH2Q8IVE3 1493 aa26.13■■□□□ 1.77
CLN3-256ENST00000637107 MBD5Q9P267 1494 aa26.11■■□□□ 1.77
CLN3-256ENST00000637107 ZNF518AQ6AHZ1 1483 aa26.1■■□□□ 1.77
CLN3-256ENST00000637107 TCOF1Q13428 1488 aaKnown RBP26.07■■□□□ 1.76
CLN3-256ENST00000637107 KDM5CP41229 1560 aa26.05■■□□□ 1.76
CLN3-256ENST00000637107 FAM50AQ14320 339 aaKnown RBP26.05■■□□□ 1.76
CLN3-256ENST00000637107 ZMYM4Q5VZL5 1548 aa26.03■■□□□ 1.76
CLN3-256ENST00000637107 ARHGEF5Q12774 1597 aa26.01■■□□□ 1.75
CLN3-256ENST00000637107 CCDC141Q6ZP82 1450 aa26.01■■□□□ 1.75
CLN3-256ENST00000637107 MYT1LQ9UL68 1186 aa25.99■■□□□ 1.75
CLN3-256ENST00000637107 RRBP1Q9P2E9 1410 aaKnown RBP25.99■■□□□ 1.75
CLN3-256ENST00000637107 YEATS2Q9ULM3 1422 aa25.99■■□□□ 1.75
CLN3-256ENST00000637107 RSPH4AQ5TD94 716 aa25.98■■□□□ 1.75
CLN3-256ENST00000637107 SPAG9O60271 1321 aaKnown RBP25.98■■□□□ 1.75
CLN3-256ENST00000637107 HECW2Q9P2P5 1572 aa25.98■■□□□ 1.75
CLN3-256ENST00000637107 CCER1Q8TC90 406 aaPredicted RBP25.97■■□□□ 1.75
CLN3-256ENST00000637107 MLH3Q9UHC1 1453 aa25.96■■□□□ 1.75
CLN3-256ENST00000637107 ABCC5O15440 1437 aa25.96■■□□□ 1.75
CLN3-256ENST00000637107 KIDINS220Q9ULH0 1771 aa25.95■■□□□ 1.75
CLN3-256ENST00000637107 MAGI2Q86UL8 1455 aa25.95■■□□□ 1.75
CLN3-256ENST00000637107 ZFYVE16Q7Z3T8 1539 aa25.95■■□□□ 1.74
CLN3-256ENST00000637107 DNMT1P26358 1616 aaKnown RBP25.95■■□□□ 1.74
CLN3-256ENST00000637107 DAPK1P53355 1430 aa25.94■■□□□ 1.74
CLN3-256ENST00000637107 TSPY4P0CV99 314 aa25.93■■□□□ 1.74
CLN3-256ENST00000637107 TSPY10P0CW01 314 aa25.93■■□□□ 1.74
CLN3-256ENST00000637107 INO80Q9ULG1 1556 aaPredicted RBP25.92■■□□□ 1.74
CLN3-256ENST00000637107 ATP7AQ04656 1500 aa25.92■■□□□ 1.74
CLN3-256ENST00000637107 ARHGEF40Q8TER5 1519 aa25.92■■□□□ 1.74
CLN3-256ENST00000637107 CROCC2H7BZ55 1655 aa25.9■■□□□ 1.74
CLN3-256ENST00000637107 ABCA6Q8N139 1617 aa25.9■■□□□ 1.74
CLN3-256ENST00000637107 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.9■■□□□ 1.74
CLN3-256ENST00000637107 C9orf84Q5VXU9 1444 aa25.89■■□□□ 1.73
CLN3-256ENST00000637107 ITGAEP38570 1179 aa25.88■■□□□ 1.73
CLN3-256ENST00000637107 DIP2CQ9Y2E4 1556 aa25.88■■□□□ 1.73
CLN3-256ENST00000637107 RTEL1-TNFRSF6BF6WH68 1400 aa25.88■■□□□ 1.73
CLN3-256ENST00000637107 CHIC2Q9UKJ5 165 aa25.87■■□□□ 1.73
CLN3-256ENST00000637107 PTPRKQ15262 1439 aa25.86■■□□□ 1.73
CLN3-256ENST00000637107 MAST1Q9Y2H9 1570 aa25.86■■□□□ 1.73
CLN3-256ENST00000637107 ATP10AO60312 1499 aa25.85■■□□□ 1.73
CLN3-256ENST00000637107 SHANK2Q9UPX8 1470 aa25.85■■□□□ 1.73
CLN3-256ENST00000637107 SIGLEC1Q9BZZ2 1709 aa25.83■■□□□ 1.73
CLN3-256ENST00000637107 ADGBQ8N7X0 1667 aa25.79■■□□□ 1.72
CLN3-256ENST00000637107 RRP7BPQ9NSQ0 103 aa25.78■■□□□ 1.72
CLN3-256ENST00000637107 PLXNC1O60486 1568 aa25.77■■□□□ 1.72
CLN3-256ENST00000637107 A2MP01023 1474 aa25.76■■□□□ 1.71
CLN3-256ENST00000637107 NCOA1Q15788 1441 aa25.76■■□□□ 1.71
CLN3-256ENST00000637107 ARID4BQ4LE39 1312 aaPredicted RBP25.76■■□□□ 1.71
CLN3-256ENST00000637107 REREQ9P2R6 1566 aa25.75■■□□□ 1.71
CLN3-256ENST00000637107 ADGRL2O95490 1459 aa25.74■■□□□ 1.71
CLN3-256ENST00000637107 ANKRD30AQ9BXX3 1397 aa25.74■■□□□ 1.71
CLN3-256ENST00000637107 KIF15Q9NS87 1388 aa25.73■■□□□ 1.71
CLN3-256ENST00000637107 DHX29Q7Z478 1369 aaKnown RBP25.72■■□□□ 1.71
CLN3-256ENST00000637107 ROCK1Q13464 1354 aa25.68■■□□□ 1.7
CLN3-256ENST00000637107 AGLP35573 1532 aa25.67■■□□□ 1.7
CLN3-256ENST00000637107 MLECQ14165 292 aa25.67■■□□□ 1.7
CLN3-256ENST00000637107 DUOX2Q9NRD8 1548 aa25.67■■□□□ 1.7
CLN3-256ENST00000637107 BCORL1Q5H9F3 1711 aa25.64■■□□□ 1.69
CLN3-256ENST00000637107 KIF3BO15066 747 aa25.63■■□□□ 1.69
CLN3-256ENST00000637107 ERBINQ96RT1 1412 aa25.6■■□□□ 1.69
CLN3-256ENST00000637107 GGT6Q6P531 493 aa25.6■■□□□ 1.69
CLN3-256ENST00000637107 ANKRD50Q9ULJ7 1429 aa25.59■■□□□ 1.69
CLN3-256ENST00000637107 KDM4FA0A1W2PPD8 638 aa25.59■■□□□ 1.69
CLN3-256ENST00000637107 EIF2AK4Q9P2K8 1649 aaKnown RBP25.57■■□□□ 1.68
CLN3-256ENST00000637107 NAIPQ13075 1403 aa25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms