RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CDC42BPBQ9Y5S2 1711 aa30.12■■■□□ 2.41
CLN3-250ENST00000636839 CCER1Q8TC90 406 aaPredicted RBP30.1■■■□□ 2.41
CLN3-250ENST00000636839 PREX2Q70Z35 1606 aa30.09■■■□□ 2.41
CLN3-250ENST00000636839 ABCC5O15440 1437 aa30.09■■■□□ 2.41
CLN3-250ENST00000636839 HRCP23327 699 aa30.08■■■□□ 2.41
CLN3-250ENST00000636839 DAPK1P53355 1430 aa30.07■■■□□ 2.4
CLN3-250ENST00000636839 ARHGAP5Q13017 1502 aa30.06■■■□□ 2.4
CLN3-250ENST00000636839 HNRNPMP52272 730 aaKnown RBP eCLIP30.06■■■□□ 2.4
CLN3-250ENST00000636839 RAB3GAP2Q9H2M9 1393 aa30.06■■■□□ 2.4
CLN3-250ENST00000636839 PLCH2O75038 1416 aa30.05■■■□□ 2.4
CLN3-250ENST00000636839 RRP7BPQ9NSQ0 103 aa30.05■■■□□ 2.4
CLN3-250ENST00000636839 SETD5Q9C0A6 1442 aa30.04■■■□□ 2.4
CLN3-250ENST00000636839 MYO5CQ9NQX4 1742 aa30.04■■■□□ 2.4
CLN3-250ENST00000636839 SAMD9LQ8IVG5 1584 aa30.03■■■□□ 2.4
CLN3-250ENST00000636839 DNMT1P26358 1616 aaKnown RBP30.02■■■□□ 2.4
CLN3-250ENST00000636839 ABCA9Q8IUA7 1624 aa29.98■■■□□ 2.39
CLN3-250ENST00000636839 EFCAB2Q5VUJ9 269 aa29.96■■■□□ 2.39
CLN3-250ENST00000636839 HFM1A2PYH4 1435 aa29.96■■■□□ 2.39
CLN3-250ENST00000636839 NAIPQ13075 1403 aa29.96■■■□□ 2.39
CLN3-250ENST00000636839 MBD5Q9P267 1494 aa29.96■■■□□ 2.39
CLN3-250ENST00000636839 MAPKBP1O60336 1514 aa29.94■■■□□ 2.38
CLN3-250ENST00000636839 AKNAQ7Z591 1439 aa29.91■■■□□ 2.38
CLN3-250ENST00000636839 SYCP2Q9BX26 1530 aa29.91■■■□□ 2.38
CLN3-250ENST00000636839 ARHGEF12Q9NZN5 1544 aa29.91■■■□□ 2.38
CLN3-250ENST00000636839 DHX57Q6P158 1386 aaKnown RBP29.88■■■□□ 2.37
CLN3-250ENST00000636839 CD109Q6YHK3 1445 aa29.86■■■□□ 2.37
CLN3-250ENST00000636839 FANCAO15360 1455 aa29.86■■■□□ 2.37
CLN3-250ENST00000636839 ROCK1Q13464 1354 aa29.85■■■□□ 2.37
CLN3-250ENST00000636839 CROCC2H7BZ55 1655 aa29.85■■■□□ 2.37
CLN3-250ENST00000636839 ARAP3Q8WWN8 1544 aa29.84■■■□□ 2.37
CLN3-250ENST00000636839 KDM6BO15054 1643 aa29.84■■■□□ 2.37
CLN3-250ENST00000636839 TSPY4P0CV99 314 aa29.84■■■□□ 2.37
CLN3-250ENST00000636839 TSPY10P0CW01 314 aa29.84■■■□□ 2.37
CLN3-250ENST00000636839 ARHGEF5Q12774 1597 aa29.84■■■□□ 2.37
CLN3-250ENST00000636839 KIAA1107Q9UPP5 1409 aa29.84■■■□□ 2.37
CLN3-250ENST00000636839 NCOA1Q15788 1441 aa29.83■■■□□ 2.37
CLN3-250ENST00000636839 C9orf84Q5VXU9 1444 aa29.83■■■□□ 2.37
CLN3-250ENST00000636839 CCDC141Q6ZP82 1450 aa29.82■■■□□ 2.36
CLN3-250ENST00000636839 TRAPPC8Q9Y2L5 1435 aa29.8■■■□□ 2.36
CLN3-250ENST00000636839 FAM69CQ0P6D2 419 aa29.8■■■□□ 2.36
CLN3-250ENST00000636839 ABCC1P33527 1531 aa29.8■■■□□ 2.36
CLN3-250ENST00000636839 PLEKHH2Q8IVE3 1493 aa29.8■■■□□ 2.36
CLN3-250ENST00000636839 RSPH4AQ5TD94 716 aa29.78■■■□□ 2.36
CLN3-250ENST00000636839 AFAP1Q8N556 730 aa29.78■■■□□ 2.36
CLN3-250ENST00000636839 GCC2Q8IWJ2 1684 aa29.77■■■□□ 2.36
CLN3-250ENST00000636839 SHANK2Q9UPX8 1470 aa29.77■■■□□ 2.36
CLN3-250ENST00000636839 ADGRL2O95490 1459 aa29.77■■■□□ 2.36
CLN3-250ENST00000636839 ANKRD30AQ9BXX3 1397 aa29.76■■■□□ 2.35
CLN3-250ENST00000636839 ADGBQ8N7X0 1667 aa29.74■■■□□ 2.35
CLN3-250ENST00000636839 SCAPERQ9BY12 1400 aa29.72■■■□□ 2.35
CLN3-250ENST00000636839 ADGRL1O94910 1474 aa29.72■■■□□ 2.35
CLN3-250ENST00000636839 DIP2BQ9P265 1576 aa29.72■■■□□ 2.35
CLN3-250ENST00000636839 ZEB1P37275 1124 aaPredicted RBP29.71■■■□□ 2.35
CLN3-250ENST00000636839 DNAJC5Q9H3Z4 198 aa29.7■■■□□ 2.34
CLN3-250ENST00000636839 GLI2P10070 1586 aa29.69■■■□□ 2.34
CLN3-250ENST00000636839 MAP3K4Q9Y6R4 1608 aa29.68■■■□□ 2.34
CLN3-250ENST00000636839 TRIM52Q96A61 297 aa29.67■■■□□ 2.34
CLN3-250ENST00000636839 KIF15Q9NS87 1388 aa29.67■■■□□ 2.34
CLN3-250ENST00000636839 ANKRD50Q9ULJ7 1429 aa29.63■■■□□ 2.33
CLN3-250ENST00000636839 SPAG9O60271 1321 aaKnown RBP29.63■■■□□ 2.33
CLN3-250ENST00000636839 MAST1Q9Y2H9 1570 aa29.62■■■□□ 2.33
CLN3-250ENST00000636839 TSPOAP1O95153 1857 aa29.57■■■□□ 2.32
CLN3-250ENST00000636839 RAPGEF3O95398 923 aa29.57■■■□□ 2.32
CLN3-250ENST00000636839 NEO1Q92859 1461 aa29.56■■■□□ 2.32
CLN3-250ENST00000636839 CFAP74Q9C0B2 1584 aa29.55■■■□□ 2.32
CLN3-250ENST00000636839 MYT1LQ9UL68 1186 aa29.55■■■□□ 2.32
CLN3-250ENST00000636839 KIF13AQ9H1H9 1805 aa29.54■■■□□ 2.32
CLN3-250ENST00000636839 CLSPNQ9HAW4 1339 aa29.53■■■□□ 2.32
CLN3-250ENST00000636839 ZFYVE16Q7Z3T8 1539 aa29.53■■■□□ 2.32
CLN3-250ENST00000636839 DENND4BO75064 1496 aaPredicted RBP29.53■■■□□ 2.32
CLN3-250ENST00000636839 MPHOSPH9Q99550 1183 aa29.52■■■□□ 2.32
CLN3-250ENST00000636839 PLXNC1O60486 1568 aa29.52■■■□□ 2.32
CLN3-250ENST00000636839 POGZQ7Z3K3 1410 aa29.51■■■□□ 2.32
CLN3-250ENST00000636839 PPRC1Q5VV67 1664 aaKnown RBP29.51■■■□□ 2.31
CLN3-250ENST00000636839 SIN3AQ96ST3 1273 aa29.5■■■□□ 2.31
CLN3-250ENST00000636839 RTEL1-TNFRSF6BF6WH68 1400 aa29.5■■■□□ 2.31
CLN3-250ENST00000636839 FOXD1Q16676 465 aa29.5■■■□□ 2.31
CLN3-250ENST00000636839 ZNF518AQ6AHZ1 1483 aa29.49■■■□□ 2.31
CLN3-250ENST00000636839 ATP7AQ04656 1500 aa29.48■■■□□ 2.31
CLN3-250ENST00000636839 INO80Q9ULG1 1556 aaPredicted RBP29.47■■■□□ 2.31
CLN3-250ENST00000636839 SLC4A1APQ9BWU0 796 aaKnown RBP29.44■■■□□ 2.3
CLN3-250ENST00000636839 DUOX2Q9NRD8 1548 aa29.44■■■□□ 2.3
CLN3-250ENST00000636839 NEUROD1Q13562 356 aa29.44■■■□□ 2.3
CLN3-250ENST00000636839 PZPP20742 1482 aa29.43■■■□□ 2.3
CLN3-250ENST00000636839 NUP155O75694 1391 aa29.43■■■□□ 2.3
CLN3-250ENST00000636839 KIDINS220Q9ULH0 1771 aa29.42■■■□□ 2.3
CLN3-250ENST00000636839 KDM5CP41229 1560 aa29.41■■■□□ 2.3
CLN3-250ENST00000636839 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.4■■■□□ 2.3
CLN3-250ENST00000636839 TEX14Q8IWB6 1497 aa29.37■■■□□ 2.29
CLN3-250ENST00000636839 ERBINQ96RT1 1412 aa29.37■■■□□ 2.29
CLN3-250ENST00000636839 MLH3Q9UHC1 1453 aa29.36■■■□□ 2.29
CLN3-250ENST00000636839 ACIN1Q9UKV3 1341 aaKnown RBP29.35■■■□□ 2.29
CLN3-250ENST00000636839 RICTORQ6R327 1708 aa29.35■■■□□ 2.29
CLN3-250ENST00000636839 TRHP20396 242 aaPredicted RBP29.35■■■□□ 2.29
CLN3-250ENST00000636839 FRMPD1Q5SYB0 1578 aa29.33■■■□□ 2.29
CLN3-250ENST00000636839 PKD2Q13563 968 aa29.33■■■□□ 2.29
CLN3-250ENST00000636839 COL17A1Q9UMD9 1497 aaPredicted RBP29.32■■■□□ 2.28
CLN3-250ENST00000636839 HECW2Q9P2P5 1572 aa29.32■■■□□ 2.28
CLN3-250ENST00000636839 DHX29Q7Z478 1369 aaKnown RBP29.32■■■□□ 2.28
CLN3-250ENST00000636839 KIF3BO15066 747 aa29.29■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms