RNA–Protein interactions for RNA: ENST00000635120.1

CSMD1-218, Transcript of CUB and Sushi multiple domains 1, human

APPRIS P2 TSL 5 BASIC

Gene CSMD1, Length 11,737 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD1-218	ENST00000635120	KIAA2012	Q0VF49	1180 aa		11.56	□□□□□ -0.56
CSMD1-218	ENST00000635120	SOX12	O15370	315 aa		11.55	□□□□□ -0.56
CSMD1-218	ENST00000635120	GBP4	Q96PP9	640 aa		11.55	□□□□□ -0.56
CSMD1-218	ENST00000635120	SLK	Q9H2G2	1235 aa	Predicted RBP	11.54	□□□□□ -0.56
CSMD1-218	ENST00000635120	RBM19	Q9Y4C8	960 aa	Known RBP	11.54	□□□□□ -0.56
CSMD1-218	ENST00000635120	TMF1	P82094	1093 aa		11.54	□□□□□ -0.56
CSMD1-218	ENST00000635120	KANK1	Q14678	1352 aa		11.54	□□□□□ -0.56
CSMD1-218	ENST00000635120	CCNB3	Q8WWL7	1395 aa		11.54	□□□□□ -0.56
CSMD1-218	ENST00000635120	KTN1	Q86UP2	1357 aa	Known RBP	11.53	□□□□□ -0.56
CSMD1-218	ENST00000635120	MORC1	Q86VD1	984 aa		11.53	□□□□□ -0.56
CSMD1-218	ENST00000635120	DCAF11	Q8TEB1	546 aa		11.52	□□□□□ -0.56
CSMD1-218	ENST00000635120	TNIK	Q9UKE5	1360 aa		11.52	□□□□□ -0.57
CSMD1-218	ENST00000635120	SRPK2	P78362	688 aa	Known RBP	11.51	□□□□□ -0.57
CSMD1-218	ENST00000635120	PTMS	P20962	102 aa		11.51	□□□□□ -0.57
CSMD1-218	ENST00000635120	FHAD1	B1AJZ9	1412 aa		11.51	□□□□□ -0.57
CSMD1-218	ENST00000635120	SAFB2	Q14151	953 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
CSMD1-218	ENST00000635120	ARHGAP35	Q9NRY4	1499 aa		11.5	□□□□□ -0.57
CSMD1-218	ENST00000635120	ERCC6	Q03468	1493 aa		11.5	□□□□□ -0.57
CSMD1-218	ENST00000635120	ITPRIP	Q8IWB1	547 aa		11.5	□□□□□ -0.57
CSMD1-218	ENST00000635120	CFAP44	Q96MT7	982 aa		11.49	□□□□□ -0.57
CSMD1-218	ENST00000635120	SYAP1	Q96A49	352 aa	Predicted RBP	11.49	□□□□□ -0.57
CSMD1-218	ENST00000635120	RTF1	Q92541	710 aa	Known RBP	11.48	□□□□□ -0.57
CSMD1-218	ENST00000635120	PRKCSH	P14314	528 aa	Predicted RBP	11.48	□□□□□ -0.57
CSMD1-218	ENST00000635120	IPO8	O15397	1037 aa	Known RBP	11.48	□□□□□ -0.57
CSMD1-218	ENST00000635120	RCAN3	Q9UKA8	241 aa		11.47	□□□□□ -0.57
CSMD1-218	ENST00000635120	CCER2	I3L3R5	266 aa		11.46	□□□□□ -0.57
CSMD1-218	ENST00000635120	ROCK2	O75116	1388 aa	Known RBP	11.46	□□□□□ -0.57
CSMD1-218	ENST00000635120	TNNT3	P45378	269 aa	Predicted RBP	11.45	□□□□□ -0.58
CSMD1-218	ENST00000635120	SETD5	Q9C0A6	1442 aa		11.45	□□□□□ -0.58
CSMD1-218	ENST00000635120	VSIG10	Q8N0Z9	540 aa		11.45	□□□□□ -0.58
CSMD1-218	ENST00000635120	GPATCH3	Q96I76	525 aa		11.44	□□□□□ -0.58
CSMD1-218	ENST00000635120		A0A0U1RQG5	324 aa	Predicted RBP	11.44	□□□□□ -0.58
CSMD1-218	ENST00000635120	PDE4C	Q08493	712 aa		11.44	□□□□□ -0.58
CSMD1-218	ENST00000635120	MFAP1	P55081	439 aa	Known RBP	11.44	□□□□□ -0.58
CSMD1-218	ENST00000635120	HTATSF1	O43719	755 aa	Known RBP	11.44	□□□□□ -0.58
CSMD1-218	ENST00000635120	GOLGA6L3	A6NEY3	463 aa		11.44	□□□□□ -0.58
CSMD1-218	ENST00000635120	GOLGA6L1	Q8N7Z2	621 aa		11.44	□□□□□ -0.58
CSMD1-218	ENST00000635120	RWDD1	Q9H446	243 aa	Predicted RBP	11.44	□□□□□ -0.58
CSMD1-218	ENST00000635120	HSP90B1	P14625	803 aa	Known RBP	11.43	□□□□□ -0.58
CSMD1-218	ENST00000635120	NACAD	O15069	1562 aa		11.43	□□□□□ -0.58
CSMD1-218	ENST00000635120	HSPA5	P11021	654 aa	Known RBP	11.43	□□□□□ -0.58
CSMD1-218	ENST00000635120	TPM4	P67936	248 aa		11.42	□□□□□ -0.58
CSMD1-218	ENST00000635120	STK26	Q9P289	416 aa		11.42	□□□□□ -0.58
CSMD1-218	ENST00000635120	TRIM6-TRIM34	B2RNG4	842 aa		11.42	□□□□□ -0.58
CSMD1-218	ENST00000635120	FOXD1	Q16676	465 aa		11.42	□□□□□ -0.58
CSMD1-218	ENST00000635120	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.42	□□□□□ -0.58
CSMD1-218	ENST00000635120	CALD1	Q05682	793 aa	Known RBP	11.42	□□□□□ -0.58
CSMD1-218	ENST00000635120	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.41	□□□□□ -0.58
CSMD1-218	ENST00000635120	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
CSMD1-218	ENST00000635120	TCERG1	O14776	1098 aa	Known RBP	11.41	□□□□□ -0.58
CSMD1-218	ENST00000635120	ABCC8	Q09428	1581 aa		11.41	□□□□□ -0.58
CSMD1-218	ENST00000635120	NOL8	Q76FK4	1167 aa	Known RBP	11.4	□□□□□ -0.58
CSMD1-218	ENST00000635120	FOXD4L1	Q9NU39	408 aa		11.4	□□□□□ -0.58
CSMD1-218	ENST00000635120	PHF14	O94880	888 aa		11.4	□□□□□ -0.58
CSMD1-218	ENST00000635120	EIF3A	Q14152	1382 aa	Known RBP	11.4	□□□□□ -0.58
CSMD1-218	ENST00000635120	CHMP3	Q9Y3E7	222 aa		11.4	□□□□□ -0.59
CSMD1-218	ENST00000635120	MLEC	Q14165	292 aa		11.39	□□□□□ -0.59
CSMD1-218	ENST00000635120	PRM3	Q9NNZ6	103 aa		11.39	□□□□□ -0.59
CSMD1-218	ENST00000635120	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.39	□□□□□ -0.59
CSMD1-218	ENST00000635120	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.39	□□□□□ -0.59
CSMD1-218	ENST00000635120	TIMELESS	Q9UNS1	1208 aa		11.39	□□□□□ -0.59
CSMD1-218	ENST00000635120	CREBRF	Q8IUR6	639 aa		11.39	□□□□□ -0.59
CSMD1-218	ENST00000635120	PAK3	O75914	559 aa	Predicted RBP	11.38	□□□□□ -0.59
CSMD1-218	ENST00000635120	IPO9	Q96P70	1041 aa	Known RBP	11.38	□□□□□ -0.59
CSMD1-218	ENST00000635120	GORAB	Q5T7V8	394 aa		11.38	□□□□□ -0.59
CSMD1-218	ENST00000635120	RASSF8	Q8NHQ8	419 aa		11.37	□□□□□ -0.59
CSMD1-218	ENST00000635120	CCDC34	Q96HJ3	373 aa		11.37	□□□□□ -0.59
CSMD1-218	ENST00000635120	RALBP1	Q15311	655 aa		11.37	□□□□□ -0.59
CSMD1-218	ENST00000635120	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.37	□□□□□ -0.59
CSMD1-218	ENST00000635120	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.37	□□□□□ -0.59
CSMD1-218	ENST00000635120	TSHZ2	Q9NRE2	1034 aa		11.37	□□□□□ -0.59
CSMD1-218	ENST00000635120	CSPP1	Q1MSJ5	1256 aa		11.37	□□□□□ -0.59
CSMD1-218	ENST00000635120	SMC4	Q9NTJ3	1288 aa		11.37	□□□□□ -0.59
CSMD1-218	ENST00000635120	PRDM2	Q13029	1718 aa		11.37	□□□□□ -0.59
CSMD1-218	ENST00000635120	SPAG9	O60271	1321 aa	Known RBP	11.36	□□□□□ -0.59
CSMD1-218	ENST00000635120	CUX2	O14529	1486 aa		11.36	□□□□□ -0.59
CSMD1-218	ENST00000635120	PMFBP1	Q8TBY8	1022 aa		11.36	□□□□□ -0.59
CSMD1-218	ENST00000635120	PKD2	Q13563	968 aa		11.36	□□□□□ -0.59
CSMD1-218	ENST00000635120	STK31	Q9BXU1	1019 aa		11.36	□□□□□ -0.59
CSMD1-218	ENST00000635120	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.35	□□□□□ -0.59
CSMD1-218	ENST00000635120	HMMR	O75330	724 aa		11.35	□□□□□ -0.59
CSMD1-218	ENST00000635120	HDGF	P51858	240 aa	Known RBP	11.34	□□□□□ -0.59
CSMD1-218	ENST00000635120	VPS8	Q8N3P4	1428 aa		11.34	□□□□□ -0.59
CSMD1-218	ENST00000635120	KIF16B	Q96L93	1317 aa		11.34	□□□□□ -0.59
CSMD1-218	ENST00000635120	CCDC146	Q8IYE0	955 aa		11.34	□□□□□ -0.59
CSMD1-218	ENST00000635120	CSB-PGBD3	P0DP91	1061 aa		11.33	□□□□□ -0.6
CSMD1-218	ENST00000635120	TAF7L	Q5H9L4	462 aa		11.33	□□□□□ -0.6
CSMD1-218	ENST00000635120	RAB3GAP2	Q9H2M9	1393 aa		11.33	□□□□□ -0.6
CSMD1-218	ENST00000635120	ST18	O60284	1047 aa		11.33	□□□□□ -0.6
CSMD1-218	ENST00000635120	TPM3	P06753	285 aa		11.33	□□□□□ -0.6
CSMD1-218	ENST00000635120	DDX11L8	A8MPP1	907 aa		11.32	□□□□□ -0.6
CSMD1-218	ENST00000635120	PKNOX2	Q96KN3	472 aa		11.32	□□□□□ -0.6
CSMD1-218	ENST00000635120	CENPJ	Q9HC77	1338 aa	Predicted RBP	11.32	□□□□□ -0.6
CSMD1-218	ENST00000635120	SLC4A10	Q6U841	1118 aa		11.32	□□□□□ -0.6
CSMD1-218	ENST00000635120	CARMIL1	Q5VZK9	1371 aa		11.32	□□□□□ -0.6
CSMD1-218	ENST00000635120	SOGA1	O94964	1423 aa		11.31	□□□□□ -0.6
CSMD1-218	ENST00000635120	CLUAP1	Q96AJ1	413 aa		11.31	□□□□□ -0.6
CSMD1-218	ENST00000635120	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.3	□□□□□ -0.6
CSMD1-218	ENST00000635120	VPS53	Q5VIR6	699 aa		11.3	□□□□□ -0.6
CSMD1-218	ENST00000635120	USP35	Q9P2H5	1018 aa		11.3	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms