RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 PREX2Q70Z35 1606 aa31.61■■■□□ 2.65
SSBP4-210ENST00000601444 MAP3K1Q13233 1512 aa31.61■■■□□ 2.65
SSBP4-210ENST00000601444 LRRC9Q6ZRR7 1453 aa31.61■■■□□ 2.65
SSBP4-210ENST00000601444 CDC42BPAQ5VT25 1732 aa31.61■■■□□ 2.65
SSBP4-210ENST00000601444 ADGRL1O94910 1474 aa31.6■■■□□ 2.65
SSBP4-210ENST00000601444 DENND4BO75064 1496 aaPredicted RBP31.59■■■□□ 2.65
SSBP4-210ENST00000601444 SCAPERQ9BY12 1400 aa31.59■■■□□ 2.65
SSBP4-210ENST00000601444 CCNB3Q8WWL7 1395 aa31.58■■■□□ 2.65
SSBP4-210ENST00000601444 FRMPD1Q5SYB0 1578 aa31.58■■■□□ 2.65
SSBP4-210ENST00000601444 APLP2Q06481 763 aa31.56■■■□□ 2.64
SSBP4-210ENST00000601444 NCOA2Q15596 1464 aa31.54■■■□□ 2.64
SSBP4-210ENST00000601444 ZNF777Q9ULD5 760 aaPredicted RBP31.54■■■□□ 2.64
SSBP4-210ENST00000601444 CFDP1Q9UEE9 299 aaPredicted RBP31.52■■■□□ 2.64
SSBP4-210ENST00000601444 RICTORQ6R327 1708 aa31.51■■■□□ 2.63
SSBP4-210ENST00000601444 SUPT6HQ7KZ85 1726 aaKnown RBP31.51■■■□□ 2.63
SSBP4-210ENST00000601444 POGZQ7Z3K3 1410 aa31.48■■■□□ 2.63
SSBP4-210ENST00000601444 ARHGEF12Q9NZN5 1544 aa31.47■■■□□ 2.63
SSBP4-210ENST00000601444 AFAP1Q8N556 730 aa31.46■■■□□ 2.63
SSBP4-210ENST00000601444 SAMD9LQ8IVG5 1584 aa31.45■■■□□ 2.63
SSBP4-210ENST00000601444 ABCC1P33527 1531 aa31.44■■■□□ 2.62
SSBP4-210ENST00000601444 ZNF644Q9H582 1327 aaPredicted RBP31.44■■■□□ 2.62
SSBP4-210ENST00000601444 TRAPPC8Q9Y2L5 1435 aa31.41■■■□□ 2.62
SSBP4-210ENST00000601444 HNRNPMP52272 730 aaKnown RBP eCLIP31.4■■■□□ 2.62
SSBP4-210ENST00000601444 ZMYM4Q5VZL5 1548 aa31.39■■■□□ 2.61
SSBP4-210ENST00000601444 ITSN2Q9NZM3 1697 aa31.38■■■□□ 2.61
SSBP4-210ENST00000601444 ZNF518AQ6AHZ1 1483 aa31.38■■■□□ 2.61
SSBP4-210ENST00000601444 YEATS2Q9ULM3 1422 aa31.37■■■□□ 2.61
SSBP4-210ENST00000601444 SYCP2Q9BX26 1530 aa31.36■■■□□ 2.61
SSBP4-210ENST00000601444 KDM5CP41229 1560 aa31.32■■■□□ 2.6
SSBP4-210ENST00000601444 KDM4FA0A1W2PPD8 638 aa31.32■■■□□ 2.6
SSBP4-210ENST00000601444 KIAA1107Q9UPP5 1409 aa31.32■■■□□ 2.6
SSBP4-210ENST00000601444 ZFYVE16Q7Z3T8 1539 aa31.31■■■□□ 2.6
SSBP4-210ENST00000601444 MAGI2Q86UL8 1455 aa31.31■■■□□ 2.6
SSBP4-210ENST00000601444 ARHGEF40Q8TER5 1519 aa31.3■■■□□ 2.6
SSBP4-210ENST00000601444 PLEKHH2Q8IVE3 1493 aa31.3■■■□□ 2.6
SSBP4-210ENST00000601444 MYOM3Q5VTT5 1437 aa31.28■■■□□ 2.6
SSBP4-210ENST00000601444 MYT1LQ9UL68 1186 aa31.28■■■□□ 2.6
SSBP4-210ENST00000601444 PPARGC1BQ86YN6 1023 aaKnown RBP31.26■■■□□ 2.59
SSBP4-210ENST00000601444 CAMSAP2Q08AD1 1489 aa31.26■■■□□ 2.59
SSBP4-210ENST00000601444 MBD5Q9P267 1494 aa31.26■■■□□ 2.59
SSBP4-210ENST00000601444 HECW2Q9P2P5 1572 aa31.23■■■□□ 2.59
SSBP4-210ENST00000601444 MLH3Q9UHC1 1453 aa31.23■■■□□ 2.59
SSBP4-210ENST00000601444 ARID4BQ4LE39 1312 aaPredicted RBP31.21■■■□□ 2.59
SSBP4-210ENST00000601444 MIA2Q96PC5 1412 aa31.2■■■□□ 2.59
SSBP4-210ENST00000601444 SPAG9O60271 1321 aaKnown RBP31.2■■■□□ 2.58
SSBP4-210ENST00000601444 ATP10AO60312 1499 aa31.2■■■□□ 2.58
SSBP4-210ENST00000601444 SIGLEC1Q9BZZ2 1709 aa31.18■■■□□ 2.58
SSBP4-210ENST00000601444 KIDINS220Q9ULH0 1771 aa31.17■■■□□ 2.58
SSBP4-210ENST00000601444 DIP2CQ9Y2E4 1556 aa31.15■■■□□ 2.58
SSBP4-210ENST00000601444 ABCA6Q8N139 1617 aa31.15■■■□□ 2.58
SSBP4-210ENST00000601444 C9orf84Q5VXU9 1444 aa31.14■■■□□ 2.58
SSBP4-210ENST00000601444 AEBP2Q6ZN18 517 aaPredicted RBP31.12■■■□□ 2.57
SSBP4-210ENST00000601444 FGD6Q6ZV73 1430 aa31.12■■■□□ 2.57
SSBP4-210ENST00000601444 ATP7AQ04656 1500 aa31.1■■■□□ 2.57
SSBP4-210ENST00000601444 CCDC141Q6ZP82 1450 aa31.1■■■□□ 2.57
SSBP4-210ENST00000601444 RSPH4AQ5TD94 716 aa31.09■■■□□ 2.57
SSBP4-210ENST00000601444 INO80Q9ULG1 1556 aaPredicted RBP31.09■■■□□ 2.57
SSBP4-210ENST00000601444 PTPN23Q9H3S7 1636 aa31.08■■■□□ 2.57
SSBP4-210ENST00000601444 MLECQ14165 292 aa31.07■■■□□ 2.56
SSBP4-210ENST00000601444 ARHGEF5Q12774 1597 aa31.07■■■□□ 2.56
SSBP4-210ENST00000601444 BCORL1Q5H9F3 1711 aa31.04■■■□□ 2.56
SSBP4-210ENST00000601444 TCOF1Q13428 1488 aaKnown RBP31.02■■■□□ 2.56
SSBP4-210ENST00000601444 RTEL1-TNFRSF6BF6WH68 1400 aa31.02■■■□□ 2.56
SSBP4-210ENST00000601444 REREQ9P2R6 1566 aa31.01■■■□□ 2.56
SSBP4-210ENST00000601444 ADAMTSL3P82987 1691 aa31.01■■■□□ 2.55
SSBP4-210ENST00000601444 TSPY4P0CV99 314 aa31.01■■■□□ 2.55
SSBP4-210ENST00000601444 TSPY10P0CW01 314 aa31.01■■■□□ 2.55
SSBP4-210ENST00000601444 FAM50AQ14320 339 aaKnown RBP30.97■■■□□ 2.55
SSBP4-210ENST00000601444 ABCC5O15440 1437 aa30.97■■■□□ 2.55
SSBP4-210ENST00000601444 A2MP01023 1474 aa30.95■■■□□ 2.55
SSBP4-210ENST00000601444 MADDQ8WXG6 1647 aa30.95■■■□□ 2.54
SSBP4-210ENST00000601444 AGLP35573 1532 aa30.93■■■□□ 2.54
SSBP4-210ENST00000601444 DAPK1P53355 1430 aa30.91■■■□□ 2.54
SSBP4-210ENST00000601444 PLXNC1O60486 1568 aa30.9■■■□□ 2.54
SSBP4-210ENST00000601444 MAST1Q9Y2H9 1570 aa30.9■■■□□ 2.54
SSBP4-210ENST00000601444 DNMT1P26358 1616 aaKnown RBP30.89■■■□□ 2.54
SSBP4-210ENST00000601444 ADGBQ8N7X0 1667 aa30.89■■■□□ 2.54
SSBP4-210ENST00000601444 DHX29Q7Z478 1369 aaKnown RBP30.88■■■□□ 2.53
SSBP4-210ENST00000601444 PTPRMP28827 1452 aa30.86■■■□□ 2.53
SSBP4-210ENST00000601444 CHIC2Q9UKJ5 165 aa30.85■■■□□ 2.53
SSBP4-210ENST00000601444 CROCC2H7BZ55 1655 aa30.84■■■□□ 2.53
SSBP4-210ENST00000601444 RIMS1Q86UR5 1692 aaKnown RBP30.84■■■□□ 2.53
SSBP4-210ENST00000601444 SHANK2Q9UPX8 1470 aa30.82■■■□□ 2.53
SSBP4-210ENST00000601444 PLPPR3Q6T4P5 718 aa30.81■■■□□ 2.52
SSBP4-210ENST00000601444 FER1L4A9Z1Z3 1794 aa30.8■■■□□ 2.52
SSBP4-210ENST00000601444 GGT6Q6P531 493 aa30.8■■■□□ 2.52
SSBP4-210ENST00000601444 RRP7BPQ9NSQ0 103 aa30.8■■■□□ 2.52
SSBP4-210ENST00000601444 KIF3BO15066 747 aa30.78■■■□□ 2.52
SSBP4-210ENST00000601444 PTPRKQ15262 1439 aa30.76■■■□□ 2.51
SSBP4-210ENST00000601444 CEBPAP49715 358 aaPredicted RBP30.74■■■□□ 2.51
SSBP4-210ENST00000601444 KIF15Q9NS87 1388 aa30.74■■■□□ 2.51
SSBP4-210ENST00000601444 ITGAEP38570 1179 aa30.73■■■□□ 2.51
SSBP4-210ENST00000601444 RRBP1Q9P2E9 1410 aaKnown RBP30.73■■■□□ 2.51
SSBP4-210ENST00000601444 ESF1Q9H501 851 aaKnown RBP30.71■■■□□ 2.51
SSBP4-210ENST00000601444 NCOA1Q15788 1441 aa30.71■■■□□ 2.51
SSBP4-210ENST00000601444 ANKRD30AQ9BXX3 1397 aa30.7■■■□□ 2.51
SSBP4-210ENST00000601444 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.7■■■□□ 2.511e-8■■□□□ 13.7
SSBP4-210ENST00000601444 DUOX2Q9NRD8 1548 aa30.69■■■□□ 2.5
SSBP4-210ENST00000601444 ADGRL2O95490 1459 aa30.67■■■□□ 2.5
SSBP4-210ENST00000601444 CNTLNQ9NXG0 1405 aa30.63■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms