RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CHMP4BQ9H444 224 aaKnown RBP13.94□□□□□ -0.18
LIG1-220ENST00000601091 NAP1L2Q9ULW6 460 aaPredicted RBP13.93□□□□□ -0.18
LIG1-220ENST00000601091 BIVM-ERCC5R4GMW8 1640 aa13.93□□□□□ -0.18
LIG1-220ENST00000601091 PLEKHD1A6NEE1 506 aa13.93□□□□□ -0.18
LIG1-220ENST00000601091 KDM2AQ9Y2K7 1162 aa13.93□□□□□ -0.18
LIG1-220ENST00000601091 RTL5Q5HYW3 569 aaPredicted RBP13.91□□□□□ -0.18
LIG1-220ENST00000601091 FGD6Q6ZV73 1430 aa13.91□□□□□ -0.18
LIG1-220ENST00000601091 CASKIN1Q8WXD9 1431 aa13.91□□□□□ -0.18
LIG1-220ENST00000601091 TIAM1Q13009 1591 aa13.9□□□□□ -0.18
LIG1-220ENST00000601091 CCDC18Q5T9S5 1454 aa13.9□□□□□ -0.18
LIG1-220ENST00000601091 FOXD1Q16676 465 aa13.9□□□□□ -0.18
LIG1-220ENST00000601091 MSH5O43196 834 aa13.89□□□□□ -0.19
LIG1-220ENST00000601091 L3MBTL2Q969R5 705 aa13.88□□□□□ -0.19
LIG1-220ENST00000601091 ANP32AP39687 249 aaKnown RBP13.87□□□□□ -0.19
LIG1-220ENST00000601091 RSPH6AQ9H0K4 717 aa13.87□□□□□ -0.19
LIG1-220ENST00000601091 PPP4R2Q9NY27 417 aa13.87□□□□□ -0.19
LIG1-220ENST00000601091 FYCO1Q9BQS8 1478 aa13.87□□□□□ -0.19
LIG1-220ENST00000601091 B4GALNT3Q6L9W6 998 aa13.86□□□□□ -0.19
LIG1-220ENST00000601091 UACAQ9BZF9 1416 aa13.86□□□□□ -0.19
LIG1-220ENST00000601091 MAP3K1Q13233 1512 aa13.85□□□□□ -0.19
LIG1-220ENST00000601091 BBXQ8WY36 941 aaPredicted RBP13.85□□□□□ -0.19
LIG1-220ENST00000601091 GAPVD1Q14C86 1478 aa13.85□□□□□ -0.19
LIG1-220ENST00000601091 MYOM3Q5VTT5 1437 aa13.84□□□□□ -0.19
LIG1-220ENST00000601091 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.84□□□□□ -0.192e-7■■■■□ 24.9
LIG1-220ENST00000601091 CARD11Q9BXL7 1154 aa13.83□□□□□ -0.19
LIG1-220ENST00000601091 EFCAB5A4FU69 1503 aa13.82□□□□□ -0.2
LIG1-220ENST00000601091 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.82□□□□□ -0.2
LIG1-220ENST00000601091 POLA1P09884 1462 aaPredicted RBP13.8□□□□□ -0.2
LIG1-220ENST00000601091 TOPBP1Q92547 1522 aa13.79□□□□□ -0.2
LIG1-220ENST00000601091 NCOA2Q15596 1464 aa13.79□□□□□ -0.2
LIG1-220ENST00000601091 PKD2Q13563 968 aa13.79□□□□□ -0.2
LIG1-220ENST00000601091 PRDM10Q9NQV6 1147 aa13.79□□□□□ -0.2
LIG1-220ENST00000601091 HSP90B1P14625 803 aaKnown RBP13.78□□□□□ -0.2
LIG1-220ENST00000601091 WDR97A6NE52 1622 aa13.78□□□□□ -0.2
LIG1-220ENST00000601091 RGL3Q3MIN7 710 aa13.77□□□□□ -0.2
LIG1-220ENST00000601091 NESP48681 1621 aa13.76□□□□□ -0.21
LIG1-220ENST00000601091 HFM1A2PYH4 1435 aa13.76□□□□□ -0.21
LIG1-220ENST00000601091 RSPH4AQ5TD94 716 aa13.76□□□□□ -0.21
LIG1-220ENST00000601091 FBXO3Q9UK99 471 aa13.76□□□□□ -0.21
LIG1-220ENST00000601091 ABCA10Q8WWZ4 1543 aa13.75□□□□□ -0.21
LIG1-220ENST00000601091 DNMBPQ6XZF7 1577 aa13.74□□□□□ -0.21
LIG1-220ENST00000601091 PRKRIP1Q9H875 184 aaPredicted RBP13.74□□□□□ -0.21
LIG1-220ENST00000601091 CC2D2AQ9P2K1 1620 aa13.74□□□□□ -0.21
LIG1-220ENST00000601091 DCAF11Q8TEB1 546 aa13.73□□□□□ -0.21
LIG1-220ENST00000601091 CNKSR2Q8WXI2 1034 aa13.73□□□□□ -0.21
LIG1-220ENST00000601091 ZFP91Q96JP5 570 aaPredicted RBP13.73□□□□□ -0.21
LIG1-220ENST00000601091 AQRO60306 1485 aaKnown RBP eCLIP13.73□□□□□ -0.212e-7■■■■■ 34
LIG1-220ENST00000601091 PCF11O94913 1555 aaKnown RBP13.73□□□□□ -0.21
LIG1-220ENST00000601091 CANXP27824 592 aaKnown RBP13.72□□□□□ -0.21
LIG1-220ENST00000601091 ANKRD30AQ9BXX3 1397 aa13.72□□□□□ -0.21
LIG1-220ENST00000601091 CCDC9Q9Y3X0 531 aaKnown RBP13.72□□□□□ -0.21
LIG1-220ENST00000601091 CARMIL2Q6F5E8 1435 aa13.71□□□□□ -0.21
LIG1-220ENST00000601091 ZBTB47Q9UFB7 747 aaPredicted RBP13.71□□□□□ -0.21
LIG1-220ENST00000601091 USP35Q9P2H5 1018 aa13.71□□□□□ -0.22
LIG1-220ENST00000601091 ERCC6Q03468 1493 aa13.71□□□□□ -0.22
LIG1-220ENST00000601091 CNPY4Q8N129 248 aa13.7□□□□□ -0.22
LIG1-220ENST00000601091 WASHC2AQ641Q2 1341 aa13.7□□□□□ -0.22
LIG1-220ENST00000601091 NUP155O75694 1391 aa13.7□□□□□ -0.22
LIG1-220ENST00000601091 NAIPQ13075 1403 aa13.69□□□□□ -0.22
LIG1-220ENST00000601091 MAPKBP1O60336 1514 aa13.68□□□□□ -0.22
LIG1-220ENST00000601091 HSP90AA2PQ14568 343 aaPredicted RBP13.67□□□□□ -0.22
LIG1-220ENST00000601091 WDR43Q15061 677 aaKnown RBP eCLIP13.67□□□□□ -0.222e-6■■■■■ 54.5
LIG1-220ENST00000601091 CCDC184Q52MB2 194 aa13.67□□□□□ -0.22
LIG1-220ENST00000601091 PLCD3Q8N3E9 789 aa13.67□□□□□ -0.22
LIG1-220ENST00000601091 ZNF644Q9H582 1327 aaPredicted RBP13.67□□□□□ -0.22
LIG1-220ENST00000601091 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.66□□□□□ -0.22
LIG1-220ENST00000601091 WWC1Q8IX03 1113 aa13.66□□□□□ -0.22
LIG1-220ENST00000601091 JPH4Q96JJ6 628 aa13.66□□□□□ -0.22
LIG1-220ENST00000601091 NCLP19338 710 aaKnown RBP13.66□□□□□ -0.22
LIG1-220ENST00000601091 ZNF526Q8TF50 670 aaPredicted RBP13.66□□□□□ -0.22
LIG1-220ENST00000601091 EHBP1L1Q8N3D4 1523 aa13.66□□□□□ -0.22
LIG1-220ENST00000601091 CCDC7Q96M83 1385 aa13.65□□□□□ -0.22
LIG1-220ENST00000601091 BCCIPQ9P287 314 aaKnown RBP eCLIP13.65□□□□□ -0.22
LIG1-220ENST00000601091 ZBED9Q6R2W3 1325 aa13.64□□□□□ -0.23
LIG1-220ENST00000601091 PAK3O75914 559 aaPredicted RBP13.64□□□□□ -0.23
LIG1-220ENST00000601091 MIA2Q96PC5 1412 aa13.63□□□□□ -0.23
LIG1-220ENST00000601091 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.63□□□□□ -0.23
LIG1-220ENST00000601091 CUL7Q14999 1698 aa13.63□□□□□ -0.23
LIG1-220ENST00000601091 CNTLNQ9NXG0 1405 aa13.62□□□□□ -0.23
LIG1-220ENST00000601091 NUDCQ9Y266 331 aa13.62□□□□□ -0.23
LIG1-220ENST00000601091 PATL2C9JE40 543 aaKnown RBP13.62□□□□□ -0.23
LIG1-220ENST00000601091 RALBP1Q15311 655 aa13.62□□□□□ -0.23
LIG1-220ENST00000601091 KIF7Q2M1P5 1343 aa13.61□□□□□ -0.23
LIG1-220ENST00000601091 ROCK2O75116 1388 aaKnown RBP13.61□□□□□ -0.23
LIG1-220ENST00000601091 KNSTRNQ9Y448 316 aa13.61□□□□□ -0.23
LIG1-220ENST00000601091 LAS1LQ9Y4W2 734 aaKnown RBP13.61□□□□□ -0.23
LIG1-220ENST00000601091 NOP58Q9Y2X3 529 aaKnown RBP13.61□□□□□ -0.23
LIG1-220ENST00000601091 HNRNPMP52272 730 aaKnown RBP eCLIP13.6□□□□□ -0.23
LIG1-220ENST00000601091 CDCA8Q53HL2 280 aa13.6□□□□□ -0.23
LIG1-220ENST00000601091 SUPT6HQ7KZ85 1726 aaKnown RBP13.6□□□□□ -0.23
LIG1-220ENST00000601091 CHGAP10645 457 aaKnown RBP13.6□□□□□ -0.23
LIG1-220ENST00000601091 USP47Q96K76 1375 aa13.6□□□□□ -0.23
LIG1-220ENST00000601091 GRIN2BQ13224 1484 aa13.59□□□□□ -0.23
LIG1-220ENST00000601091 IGSF3O75054 1194 aa13.59□□□□□ -0.23
LIG1-220ENST00000601091 CC2D1BQ5T0F9 858 aaKnown RBP13.59□□□□□ -0.23
LIG1-220ENST00000601091 TMF1P82094 1093 aa13.59□□□□□ -0.23
LIG1-220ENST00000601091 ST20-MTHFSA0A0A6YYL1 179 aa13.58□□□□□ -0.23
LIG1-220ENST00000601091 SECISBP2LQ93073 1101 aaKnown RBP13.58□□□□□ -0.24
LIG1-220ENST00000601091 NBPF8Q3BBV2 869 aa13.58□□□□□ -0.24
LIG1-220ENST00000601091 TMEM132AQ24JP5 1023 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms