RNA–Protein interactions for RNA: ENST00000600137.5

VRK3-219, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 822 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-219ENST00000600137 PREX2Q70Z35 1606 aa21.59■■□□□ 1.05
VRK3-219ENST00000600137 APLP2Q06481 763 aa21.58■■□□□ 1.05
VRK3-219ENST00000600137 EFCAB2Q5VUJ9 269 aa21.58■■□□□ 1.05
VRK3-219ENST00000600137 SUPT6HQ7KZ85 1726 aaKnown RBP21.58■■□□□ 1.04
VRK3-219ENST00000600137 CCNB3Q8WWL7 1395 aa21.55■■□□□ 1.04
VRK3-219ENST00000600137 ARHGAP5Q13017 1502 aa21.55■■□□□ 1.04
VRK3-219ENST00000600137 CFAP74Q9C0B2 1584 aa21.53■■□□□ 1.04
VRK3-219ENST00000600137 RAPGEF3O95398 923 aa21.52■■□□□ 1.04
VRK3-219ENST00000600137 SCAPERQ9BY12 1400 aa21.5■■□□□ 1.03
VRK3-219ENST00000600137 CFDP1Q9UEE9 299 aaPredicted RBP21.5■■□□□ 1.03
VRK3-219ENST00000600137 ARHGEF12Q9NZN5 1544 aa21.5■■□□□ 1.03
VRK3-219ENST00000600137 FRMPD1Q5SYB0 1578 aa21.49■■□□□ 1.03
VRK3-219ENST00000600137 ADGRL1O94910 1474 aa21.49■■□□□ 1.03
VRK3-219ENST00000600137 SAMD9LQ8IVG5 1584 aa21.48■■□□□ 1.03
VRK3-219ENST00000600137 DENND4BO75064 1496 aaPredicted RBP21.48■■□□□ 1.03
VRK3-219ENST00000600137 RICTORQ6R327 1708 aa21.47■■□□□ 1.03
VRK3-219ENST00000600137 ZNF644Q9H582 1327 aaPredicted RBP21.47■■□□□ 1.03
VRK3-219ENST00000600137 ITSN2Q9NZM3 1697 aa21.46■■□□□ 1.03
VRK3-219ENST00000600137 ABCC1P33527 1531 aa21.45■■□□□ 1.02
VRK3-219ENST00000600137 ZNF777Q9ULD5 760 aaPredicted RBP21.44■■□□□ 1.02
VRK3-219ENST00000600137 MYOM3Q5VTT5 1437 aa21.44■■□□□ 1.02
VRK3-219ENST00000600137 POGZQ7Z3K3 1410 aa21.43■■□□□ 1.02
VRK3-219ENST00000600137 PPARGC1BQ86YN6 1023 aaKnown RBP21.42■■□□□ 1.02
VRK3-219ENST00000600137 AFAP1Q8N556 730 aa21.42■■□□□ 1.02
VRK3-219ENST00000600137 KIAA1107Q9UPP5 1409 aa21.42■■□□□ 1.02
VRK3-219ENST00000600137 TRAPPC8Q9Y2L5 1435 aa21.42■■□□□ 1.02
VRK3-219ENST00000600137 HNRNPMP52272 730 aaKnown RBP eCLIP21.41■■□□□ 1.02
VRK3-219ENST00000600137 MBD5Q9P267 1494 aa21.4■■□□□ 1.02
VRK3-219ENST00000600137 MIA2Q96PC5 1412 aa21.39■■□□□ 1.02
VRK3-219ENST00000600137 ZMYM4Q5VZL5 1548 aa21.39■■□□□ 1.01
VRK3-219ENST00000600137 SYCP2Q9BX26 1530 aa21.38■■□□□ 1.01
VRK3-219ENST00000600137 KDM5CP41229 1560 aa21.37■■□□□ 1.01
VRK3-219ENST00000600137 PLEKHH2Q8IVE3 1493 aa21.37■■□□□ 1.01
VRK3-219ENST00000600137 CAMSAP2Q08AD1 1489 aa21.36■■□□□ 1.01
VRK3-219ENST00000600137 ZNF518AQ6AHZ1 1483 aa21.36■■□□□ 1.01
VRK3-219ENST00000600137 FGD6Q6ZV73 1430 aa21.34■■□□□ 1.01
VRK3-219ENST00000600137 MAGI2Q86UL8 1455 aa21.32■■□□□ 1
VRK3-219ENST00000600137 YEATS2Q9ULM3 1422 aa21.32■■□□□ 1
VRK3-219ENST00000600137 MLH3Q9UHC1 1453 aa21.32■■□□□ 1
VRK3-219ENST00000600137 TCOF1Q13428 1488 aaKnown RBP21.31■■□□□ 1
VRK3-219ENST00000600137 PTPN23Q9H3S7 1636 aa21.29■■□□□ 1
VRK3-219ENST00000600137 KIDINS220Q9ULH0 1771 aa21.28■■□□□ 1
VRK3-219ENST00000600137 ARHGEF5Q12774 1597 aa21.28■■□□□ 1
VRK3-219ENST00000600137 RSPH4AQ5TD94 716 aa21.27■■□□□ 1
VRK3-219ENST00000600137 ARHGEF40Q8TER5 1519 aa21.27■■□□□ 1
VRK3-219ENST00000600137 ZFYVE16Q7Z3T8 1539 aa21.26■□□□□ 0.99
VRK3-219ENST00000600137 HECW2Q9P2P5 1572 aa21.26■□□□□ 0.99
VRK3-219ENST00000600137 CCDC141Q6ZP82 1450 aa21.24■□□□□ 0.99
VRK3-219ENST00000600137 SPAG9O60271 1321 aaKnown RBP21.24■□□□□ 0.99
VRK3-219ENST00000600137 SIGLEC1Q9BZZ2 1709 aa21.24■□□□□ 0.99
VRK3-219ENST00000600137 INO80Q9ULG1 1556 aaPredicted RBP21.23■□□□□ 0.99
VRK3-219ENST00000600137 DIP2CQ9Y2E4 1556 aa21.23■□□□□ 0.99
VRK3-219ENST00000600137 ATP10AO60312 1499 aa21.22■□□□□ 0.99
VRK3-219ENST00000600137 ABCA6Q8N139 1617 aa21.22■□□□□ 0.99
VRK3-219ENST00000600137 RTEL1-TNFRSF6BF6WH68 1400 aa21.21■□□□□ 0.99
VRK3-219ENST00000600137 ABCC5O15440 1437 aa21.21■□□□□ 0.99
VRK3-219ENST00000600137 ATP7AQ04656 1500 aa21.2■□□□□ 0.98
VRK3-219ENST00000600137 DNMT1P26358 1616 aaKnown RBP21.18■□□□□ 0.98
VRK3-219ENST00000600137 RRBP1Q9P2E9 1410 aaKnown RBP21.17■□□□□ 0.98
VRK3-219ENST00000600137 MAST1Q9Y2H9 1570 aa21.17■□□□□ 0.98
VRK3-219ENST00000600137 REREQ9P2R6 1566 aa21.16■□□□□ 0.98
VRK3-219ENST00000600137 DAPK1P53355 1430 aa21.16■□□□□ 0.98
VRK3-219ENST00000600137 TSPY4P0CV99 314 aa21.16■□□□□ 0.98
VRK3-219ENST00000600137 TSPY10P0CW01 314 aa21.16■□□□□ 0.98
VRK3-219ENST00000600137 C9orf84Q5VXU9 1444 aa21.15■□□□□ 0.98
VRK3-219ENST00000600137 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.15■□□□□ 0.98
VRK3-219ENST00000600137 KDM4FA0A1W2PPD8 638 aa21.15■□□□□ 0.98
VRK3-219ENST00000600137 FAM50AQ14320 339 aaKnown RBP21.15■□□□□ 0.98
VRK3-219ENST00000600137 MYT1LQ9UL68 1186 aa21.15■□□□□ 0.98
VRK3-219ENST00000600137 PTPRKQ15262 1439 aa21.13■□□□□ 0.97
VRK3-219ENST00000600137 CROCC2H7BZ55 1655 aa21.13■□□□□ 0.97
VRK3-219ENST00000600137 SHANK2Q9UPX8 1470 aa21.12■□□□□ 0.97
VRK3-219ENST00000600137 AGLP35573 1532 aa21.1■□□□□ 0.97
VRK3-219ENST00000600137 ADGBQ8N7X0 1667 aa21.1■□□□□ 0.97
VRK3-219ENST00000600137 PLXNC1O60486 1568 aa21.1■□□□□ 0.97
VRK3-219ENST00000600137 A2MP01023 1474 aa21.09■□□□□ 0.97
VRK3-219ENST00000600137 DHX29Q7Z478 1369 aaKnown RBP21.09■□□□□ 0.97
VRK3-219ENST00000600137 BCORL1Q5H9F3 1711 aa21.08■□□□□ 0.97
VRK3-219ENST00000600137 ARID4BQ4LE39 1312 aaPredicted RBP21.06■□□□□ 0.96
VRK3-219ENST00000600137 ADAMTSL3P82987 1691 aa21.06■□□□□ 0.96
VRK3-219ENST00000600137 CHIC2Q9UKJ5 165 aa21.06■□□□□ 0.96
VRK3-219ENST00000600137 NCOA1Q15788 1441 aa21.05■□□□□ 0.96
VRK3-219ENST00000600137 ADGRL2O95490 1459 aa21.05■□□□□ 0.96
VRK3-219ENST00000600137 RRP7BPQ9NSQ0 103 aa21.01■□□□□ 0.95
VRK3-219ENST00000600137 MLECQ14165 292 aa21■□□□□ 0.95
VRK3-219ENST00000600137 KIF15Q9NS87 1388 aa20.99■□□□□ 0.95
VRK3-219ENST00000600137 ANKRD30AQ9BXX3 1397 aa20.98■□□□□ 0.95
VRK3-219ENST00000600137 DUOX2Q9NRD8 1548 aa20.98■□□□□ 0.95
VRK3-219ENST00000600137 ITGAEP38570 1179 aa20.97■□□□□ 0.95
VRK3-219ENST00000600137 ROCK1Q13464 1354 aa20.97■□□□□ 0.95
VRK3-219ENST00000600137 MADDQ8WXG6 1647 aa20.96■□□□□ 0.95
VRK3-219ENST00000600137 KIF3BO15066 747 aa20.95■□□□□ 0.94
VRK3-219ENST00000600137 GGT6Q6P531 493 aa20.92■□□□□ 0.94
VRK3-219ENST00000600137 EIF2AK4Q9P2K8 1649 aaKnown RBP20.92■□□□□ 0.94
VRK3-219ENST00000600137 ERBINQ96RT1 1412 aa20.91■□□□□ 0.94
VRK3-219ENST00000600137 FER1L4A9Z1Z3 1794 aa20.9■□□□□ 0.94
VRK3-219ENST00000600137 MROH1Q8NDA8 1641 aa20.89■□□□□ 0.94
VRK3-219ENST00000600137 RNF17Q9BXT8 1623 aaKnown RBP20.89■□□□□ 0.94
VRK3-219ENST00000600137 PTPRMP28827 1452 aa20.89■□□□□ 0.94
VRK3-219ENST00000600137 PPP6R1Q9UPN7 881 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms