RNA–Protein interactions for RNA: ENST00000590556.1

DDX39A-214, Transcript of DExD-box helicase 39A, humanhuman

TSL 2

Gene DDX39A, Length 575 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-214ENST00000590556 ARHGAP5Q13017 1502 aa29.79■■■□□ 2.36
DDX39A-214ENST00000590556 CFAP74Q9C0B2 1584 aa29.78■■■□□ 2.36
DDX39A-214ENST00000590556 CDC42BPBQ9Y5S2 1711 aa29.78■■■□□ 2.36
DDX39A-214ENST00000590556 PHLDB1Q86UU1 1377 aa29.77■■■□□ 2.36
DDX39A-214ENST00000590556 AKNAQ7Z591 1439 aa29.74■■■□□ 2.35
DDX39A-214ENST00000590556 CFDP1Q9UEE9 299 aaPredicted RBP29.73■■■□□ 2.35
DDX39A-214ENST00000590556 ITSN2Q9NZM3 1697 aa29.72■■■□□ 2.35
DDX39A-214ENST00000590556 KDM6BO15054 1643 aa29.72■■■□□ 2.35
DDX39A-214ENST00000590556 PPARGC1BQ86YN6 1023 aaKnown RBP29.71■■■□□ 2.35
DDX39A-214ENST00000590556 ZNF777Q9ULD5 760 aaPredicted RBP29.69■■■□□ 2.34
DDX39A-214ENST00000590556 COL17A1Q9UMD9 1497 aaPredicted RBP29.68■■■□□ 2.34
DDX39A-214ENST00000590556 ADGRL1O94910 1474 aa29.66■■■□□ 2.34
DDX39A-214ENST00000590556 MYOM3Q5VTT5 1437 aa29.64■■■□□ 2.34
DDX39A-214ENST00000590556 SCAPERQ9BY12 1400 aa29.62■■■□□ 2.33
DDX39A-214ENST00000590556 DENND4BO75064 1496 aaPredicted RBP29.61■■■□□ 2.33
DDX39A-214ENST00000590556 SAMD9LQ8IVG5 1584 aa29.6■■■□□ 2.33
DDX39A-214ENST00000590556 RAPGEF3O95398 923 aa29.59■■■□□ 2.33
DDX39A-214ENST00000590556 ABCC1P33527 1531 aa29.57■■■□□ 2.32
DDX39A-214ENST00000590556 PLEKHH2Q8IVE3 1493 aa29.57■■■□□ 2.32
DDX39A-214ENST00000590556 ZNF644Q9H582 1327 aaPredicted RBP29.57■■■□□ 2.32
DDX39A-214ENST00000590556 MIA2Q96PC5 1412 aa29.56■■■□□ 2.32
DDX39A-214ENST00000590556 ARHGEF12Q9NZN5 1544 aa29.53■■■□□ 2.32
DDX39A-214ENST00000590556 RICTORQ6R327 1708 aa29.53■■■□□ 2.32
DDX39A-214ENST00000590556 CAMSAP2Q08AD1 1489 aa29.53■■■□□ 2.32
DDX39A-214ENST00000590556 POGZQ7Z3K3 1410 aa29.53■■■□□ 2.32
DDX39A-214ENST00000590556 KIAA1107Q9UPP5 1409 aa29.53■■■□□ 2.32
DDX39A-214ENST00000590556 HNRNPMP52272 730 aaKnown RBP eCLIP29.52■■■□□ 2.325e-15■■■■■ 31.6
DDX39A-214ENST00000590556 SYCP2Q9BX26 1530 aa29.51■■■□□ 2.32
DDX39A-214ENST00000590556 FGD6Q6ZV73 1430 aa29.51■■■□□ 2.31
DDX39A-214ENST00000590556 FRMPD1Q5SYB0 1578 aa29.51■■■□□ 2.31
DDX39A-214ENST00000590556 TRAPPC8Q9Y2L5 1435 aa29.48■■■□□ 2.31
DDX39A-214ENST00000590556 AFAP1Q8N556 730 aa29.48■■■□□ 2.31
DDX39A-214ENST00000590556 ZNF518AQ6AHZ1 1483 aa29.48■■■□□ 2.31
DDX39A-214ENST00000590556 PTPN23Q9H3S7 1636 aa29.46■■■□□ 2.31
DDX39A-214ENST00000590556 MBD5Q9P267 1494 aa29.42■■■□□ 2.3
DDX39A-214ENST00000590556 ZMYM4Q5VZL5 1548 aa29.41■■■□□ 2.3
DDX39A-214ENST00000590556 TCOF1Q13428 1488 aaKnown RBP29.41■■■□□ 2.3
DDX39A-214ENST00000590556 KDM5CP41229 1560 aa29.4■■■□□ 2.3
DDX39A-214ENST00000590556 RSPH4AQ5TD94 716 aa29.4■■■□□ 2.3
DDX39A-214ENST00000590556 MYT1LQ9UL68 1186 aa29.38■■■□□ 2.29
DDX39A-214ENST00000590556 FAM50AQ14320 339 aaKnown RBP29.37■■■□□ 2.29
DDX39A-214ENST00000590556 ARHGEF5Q12774 1597 aa29.37■■■□□ 2.29
DDX39A-214ENST00000590556 CCDC141Q6ZP82 1450 aa29.36■■■□□ 2.29
DDX39A-214ENST00000590556 MAGI2Q86UL8 1455 aa29.36■■■□□ 2.29
DDX39A-214ENST00000590556 SPAG9O60271 1321 aaKnown RBP29.36■■■□□ 2.29
DDX39A-214ENST00000590556 HECW2Q9P2P5 1572 aa29.34■■■□□ 2.29
DDX39A-214ENST00000590556 MLH3Q9UHC1 1453 aa29.33■■■□□ 2.29
DDX39A-214ENST00000590556 ZFYVE16Q7Z3T8 1539 aa29.33■■■□□ 2.29
DDX39A-214ENST00000590556 TSPY4P0CV99 314 aa29.31■■■□□ 2.28
DDX39A-214ENST00000590556 TSPY10P0CW01 314 aa29.31■■■□□ 2.28
DDX39A-214ENST00000590556 YEATS2Q9ULM3 1422 aa29.3■■■□□ 2.28
DDX39A-214ENST00000590556 ARHGEF40Q8TER5 1519 aa29.29■■■□□ 2.28
DDX39A-214ENST00000590556 KIDINS220Q9ULH0 1771 aa29.27■■■□□ 2.28
DDX39A-214ENST00000590556 RRBP1Q9P2E9 1410 aaKnown RBP29.27■■■□□ 2.28
DDX39A-214ENST00000590556 ATP7AQ04656 1500 aa29.26■■■□□ 2.27
DDX39A-214ENST00000590556 DNMT1P26358 1616 aaKnown RBP29.26■■■□□ 2.27
DDX39A-214ENST00000590556 ABCC5O15440 1437 aa29.26■■■□□ 2.27
DDX39A-214ENST00000590556 INO80Q9ULG1 1556 aaPredicted RBP29.25■■■□□ 2.27
DDX39A-214ENST00000590556 RTEL1-TNFRSF6BF6WH68 1400 aa29.24■■■□□ 2.27
DDX39A-214ENST00000590556 DAPK1P53355 1430 aa29.24■■■□□ 2.27
DDX39A-214ENST00000590556 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.24■■■□□ 2.27
DDX39A-214ENST00000590556 ATP10AO60312 1499 aa29.23■■■□□ 2.27
DDX39A-214ENST00000590556 C9orf84Q5VXU9 1444 aa29.21■■■□□ 2.27
DDX39A-214ENST00000590556 ABCA6Q8N139 1617 aa29.21■■■□□ 2.27
DDX39A-214ENST00000590556 DIP2CQ9Y2E4 1556 aa29.21■■■□□ 2.27
DDX39A-214ENST00000590556 MAST1Q9Y2H9 1570 aa29.2■■■□□ 2.26
DDX39A-214ENST00000590556 CROCC2H7BZ55 1655 aa29.2■■■□□ 2.26
DDX39A-214ENST00000590556 SHANK2Q9UPX8 1470 aa29.18■■■□□ 2.26
DDX39A-214ENST00000590556 CHIC2Q9UKJ5 165 aa29.15■■■□□ 2.26
DDX39A-214ENST00000590556 ITGAEP38570 1179 aa29.14■■■□□ 2.26
DDX39A-214ENST00000590556 ARID4BQ4LE39 1312 aaPredicted RBP29.13■■■□□ 2.25
DDX39A-214ENST00000590556 ADGBQ8N7X0 1667 aa29.12■■■□□ 2.25
DDX39A-214ENST00000590556 REREQ9P2R6 1566 aa29.1■■■□□ 2.25
DDX39A-214ENST00000590556 A2MP01023 1474 aa29.1■■■□□ 2.25
DDX39A-214ENST00000590556 PTPRKQ15262 1439 aa29.09■■■□□ 2.25
DDX39A-214ENST00000590556 ANKRD30AQ9BXX3 1397 aa29.08■■■□□ 2.25
DDX39A-214ENST00000590556 PLXNC1O60486 1568 aa29.08■■■□□ 2.25
DDX39A-214ENST00000590556 SIGLEC1Q9BZZ2 1709 aa29.06■■■□□ 2.24
DDX39A-214ENST00000590556 RRP7BPQ9NSQ0 103 aa29.06■■■□□ 2.24
DDX39A-214ENST00000590556 DHX29Q7Z478 1369 aaKnown RBP29.05■■■□□ 2.24
DDX39A-214ENST00000590556 ADGRL2O95490 1459 aa29.04■■■□□ 2.24
DDX39A-214ENST00000590556 NCOA1Q15788 1441 aa29.03■■■□□ 2.24
DDX39A-214ENST00000590556 KIF15Q9NS87 1388 aa29.03■■■□□ 2.24
DDX39A-214ENST00000590556 AGLP35573 1532 aa29.02■■■□□ 2.24
DDX39A-214ENST00000590556 DUOX2Q9NRD8 1548 aa28.99■■■□□ 2.23
DDX39A-214ENST00000590556 ROCK1Q13464 1354 aa28.99■■■□□ 2.23
DDX39A-214ENST00000590556 MLECQ14165 292 aa28.98■■■□□ 2.23
DDX39A-214ENST00000590556 BCORL1Q5H9F3 1711 aa28.95■■■□□ 2.23
DDX39A-214ENST00000590556 KIF3BO15066 747 aa28.93■■■□□ 2.22
DDX39A-214ENST00000590556 ERBINQ96RT1 1412 aa28.91■■■□□ 2.22
DDX39A-214ENST00000590556 KDM4FA0A1W2PPD8 638 aa28.89■■■□□ 2.22
DDX39A-214ENST00000590556 GGT6Q6P531 493 aa28.89■■■□□ 2.22
DDX39A-214ENST00000590556 EIF2AK4Q9P2K8 1649 aaKnown RBP28.88■■■□□ 2.21
DDX39A-214ENST00000590556 ADAMTSL3P82987 1691 aa28.88■■■□□ 2.21
DDX39A-214ENST00000590556 ANKRD50Q9ULJ7 1429 aa28.86■■■□□ 2.21
DDX39A-214ENST00000590556 MADDQ8WXG6 1647 aa28.83■■■□□ 2.21
DDX39A-214ENST00000590556 ESF1Q9H501 851 aaKnown RBP28.82■■■□□ 2.2
DDX39A-214ENST00000590556 FER1L4A9Z1Z3 1794 aa28.8■■■□□ 2.2
DDX39A-214ENST00000590556 RNF17Q9BXT8 1623 aaKnown RBP28.8■■■□□ 2.2
DDX39A-214ENST00000590556 PPP6R1Q9UPN7 881 aa28.8■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms