RNA–Protein interactions for RNA: ENST00000588860.5

SMAD4-206, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-206ENST00000588860 PTPN23Q9H3S7 1636 aa13.12□□□□□ -0.31
SMAD4-206ENST00000588860 FGD6Q6ZV73 1430 aa13.12□□□□□ -0.31
SMAD4-206ENST00000588860 ABCA8O94911 1581 aa13.11□□□□□ -0.31
SMAD4-206ENST00000588860 MYOM3Q5VTT5 1437 aa13.11□□□□□ -0.31
SMAD4-206ENST00000588860 PRG4Q92954 1404 aaPredicted RBP13.11□□□□□ -0.31
SMAD4-206ENST00000588860 KIF13AQ9H1H9 1805 aa13.11□□□□□ -0.31
SMAD4-206ENST00000588860 PLB1Q6P1J6 1458 aa13.1□□□□□ -0.31
SMAD4-206ENST00000588860 ARID3CA6NKF2 412 aa13.1□□□□□ -0.31
SMAD4-206ENST00000588860 ABCB7O75027 752 aa13.1□□□□□ -0.31
SMAD4-206ENST00000588860 ADCY10Q96PN6 1610 aa13.09□□□□□ -0.31
SMAD4-206ENST00000588860 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.08□□□□□ -0.313e-7■□□□□ 10.7
SMAD4-206ENST00000588860 ITSN2Q9NZM3 1697 aa13.07□□□□□ -0.32
SMAD4-206ENST00000588860 ERCC6L2Q5T890 1561 aa13.04□□□□□ -0.32
SMAD4-206ENST00000588860 KIF14Q15058 1648 aa13.04□□□□□ -0.32
SMAD4-206ENST00000588860 FBXO41Q8TF61 875 aa13.04□□□□□ -0.32
SMAD4-206ENST00000588860 TCOF1Q13428 1488 aaKnown RBP13.04□□□□□ -0.32
SMAD4-206ENST00000588860 FAM69CQ0P6D2 419 aa13.03□□□□□ -0.32
SMAD4-206ENST00000588860 CDK11AQ9UQ88 783 aaPredicted RBP13.02□□□□□ -0.33
SMAD4-206ENST00000588860 DHX57Q6P158 1386 aaKnown RBP13.02□□□□□ -0.33
SMAD4-206ENST00000588860 PTPRGP23470 1445 aa13.02□□□□□ -0.33
SMAD4-206ENST00000588860 TROQ12816 1431 aaPredicted RBP13.02□□□□□ -0.33
SMAD4-206ENST00000588860 SETD5Q9C0A6 1442 aa13.02□□□□□ -0.33
SMAD4-206ENST00000588860 SAMD1Q6SPF0 538 aaPredicted RBP13.01□□□□□ -0.33
SMAD4-206ENST00000588860 RAB3GAP2Q9H2M9 1393 aa13.01□□□□□ -0.33
SMAD4-206ENST00000588860 GCC2Q8IWJ2 1684 aa13.01□□□□□ -0.33
SMAD4-206ENST00000588860 CDC42BPAQ5VT25 1732 aa13□□□□□ -0.33
SMAD4-206ENST00000588860 MIA2Q96PC5 1412 aa12.99□□□□□ -0.33
SMAD4-206ENST00000588860 ATP10BO94823 1461 aa12.98□□□□□ -0.33
SMAD4-206ENST00000588860 KDM6BO15054 1643 aa12.97□□□□□ -0.33
SMAD4-206ENST00000588860 HECW2Q9P2P5 1572 aa12.97□□□□□ -0.33
SMAD4-206ENST00000588860 UACAQ9BZF9 1416 aa12.96□□□□□ -0.33
SMAD4-206ENST00000588860 DNMT1P26358 1616 aaKnown RBP12.96□□□□□ -0.33
SMAD4-206ENST00000588860 ABCC2Q92887 1545 aa12.96□□□□□ -0.33
SMAD4-206ENST00000588860 PTPRKQ15262 1439 aa12.96□□□□□ -0.34
SMAD4-206ENST00000588860 CROCC2H7BZ55 1655 aa12.96□□□□□ -0.34
SMAD4-206ENST00000588860 ADGBQ8N7X0 1667 aa12.96□□□□□ -0.34
SMAD4-206ENST00000588860 ABCC10Q5T3U5 1492 aa12.95□□□□□ -0.34
SMAD4-206ENST00000588860 CLSPNQ9HAW4 1339 aa12.94□□□□□ -0.34
SMAD4-206ENST00000588860 ZCCHC11Q5TAX3 1644 aaKnown RBP12.94□□□□□ -0.34
SMAD4-206ENST00000588860 RBM42Q9BTD8 480 aaKnown RBP12.93□□□□□ -0.34
SMAD4-206ENST00000588860 HFM1A2PYH4 1435 aa12.93□□□□□ -0.34
SMAD4-206ENST00000588860 CAMSAP2Q08AD1 1489 aa12.92□□□□□ -0.34
SMAD4-206ENST00000588860 PLEKHD1A6NEE1 506 aa12.92□□□□□ -0.34
SMAD4-206ENST00000588860 GPATCH8Q9UKJ3 1502 aaKnown RBP12.92□□□□□ -0.34
SMAD4-206ENST00000588860 NPM1P06748 294 aaKnown RBP eCLIP12.91□□□□□ -0.34
SMAD4-206ENST00000588860 MAPKBP1O60336 1514 aa12.91□□□□□ -0.34
SMAD4-206ENST00000588860 PREX2Q70Z35 1606 aa12.91□□□□□ -0.34
SMAD4-206ENST00000588860 ADGRL1O94910 1474 aa12.91□□□□□ -0.34
SMAD4-206ENST00000588860 LMTK3Q96Q04 1460 aa12.91□□□□□ -0.34
SMAD4-206ENST00000588860 CDC42BPBQ9Y5S2 1711 aa12.91□□□□□ -0.34
SMAD4-206ENST00000588860 SLC4A1APQ9BWU0 796 aaKnown RBP12.9□□□□□ -0.34
SMAD4-206ENST00000588860 MYO5CQ9NQX4 1742 aa12.9□□□□□ -0.34
SMAD4-206ENST00000588860 DAPK1P53355 1430 aa12.89□□□□□ -0.35
SMAD4-206ENST00000588860 NAIPQ13075 1403 aa12.89□□□□□ -0.35
SMAD4-206ENST00000588860 AKNAQ7Z591 1439 aa12.88□□□□□ -0.35
SMAD4-206ENST00000588860 UHRF1BP1LA0JNW5 1464 aa12.88□□□□□ -0.35
SMAD4-206ENST00000588860 TTC37Q6PGP7 1564 aa12.87□□□□□ -0.35
SMAD4-206ENST00000588860 DIP2BQ9P265 1576 aa12.86□□□□□ -0.35
SMAD4-206ENST00000588860 CFDP1Q9UEE9 299 aaPredicted RBP12.86□□□□□ -0.35
SMAD4-206ENST00000588860 CHIC2Q9UKJ5 165 aa12.86□□□□□ -0.35
SMAD4-206ENST00000588860 ABCC5O15440 1437 aa12.86□□□□□ -0.35
SMAD4-206ENST00000588860 ZNF644Q9H582 1327 aaPredicted RBP12.86□□□□□ -0.35
SMAD4-206ENST00000588860 TSPOAP1O95153 1857 aa12.85□□□□□ -0.35
SMAD4-206ENST00000588860 SOCS7O14512 581 aa12.85□□□□□ -0.35
SMAD4-206ENST00000588860 RRP7BPQ9NSQ0 103 aa12.84□□□□□ -0.35
SMAD4-206ENST00000588860 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.83□□□□□ -0.353e-12■□□□□ 9.1
SMAD4-206ENST00000588860 KDM5BQ9UGL1 1544 aa12.83□□□□□ -0.36
SMAD4-206ENST00000588860 ROCK1Q13464 1354 aa12.82□□□□□ -0.36
SMAD4-206ENST00000588860 SAMD9LQ8IVG5 1584 aa12.82□□□□□ -0.36
SMAD4-206ENST00000588860 ZNF777Q9ULD5 760 aaPredicted RBP12.82□□□□□ -0.36
SMAD4-206ENST00000588860 ARHGEF5Q12774 1597 aa12.81□□□□□ -0.36
SMAD4-206ENST00000588860 ARHGAP5Q13017 1502 aa12.8□□□□□ -0.36
SMAD4-206ENST00000588860 SHANK2Q9UPX8 1470 aa12.79□□□□□ -0.36
SMAD4-206ENST00000588860 ADGRL2O95490 1459 aa12.78□□□□□ -0.36
SMAD4-206ENST00000588860 ILDR2Q71H61 639 aa12.78□□□□□ -0.36
SMAD4-206ENST00000588860 CHRDL2Q6WN34 429 aa12.77□□□□□ -0.37
SMAD4-206ENST00000588860 POLA2Q14181 598 aa12.76□□□□□ -0.37
SMAD4-206ENST00000588860 C9orf84Q5VXU9 1444 aa12.75□□□□□ -0.37
SMAD4-206ENST00000588860 SYCP2Q9BX26 1530 aa12.75□□□□□ -0.37
SMAD4-206ENST00000588860 CCDC141Q6ZP82 1450 aa12.74□□□□□ -0.37
SMAD4-206ENST00000588860 ANKRD30AQ9BXX3 1397 aa12.74□□□□□ -0.37
SMAD4-206ENST00000588860 ZNF316A6NFI3 1004 aaPredicted RBP12.74□□□□□ -0.37
SMAD4-206ENST00000588860 TRIM52Q96A61 297 aa12.74□□□□□ -0.37
SMAD4-206ENST00000588860 KCNH8Q96L42 1107 aa12.74□□□□□ -0.37
SMAD4-206ENST00000588860 WDR7Q9Y4E6 1490 aa12.73□□□□□ -0.37
SMAD4-206ENST00000588860 NCOA1Q15788 1441 aa12.73□□□□□ -0.37
SMAD4-206ENST00000588860 MYCNP04198 464 aaPredicted RBP12.73□□□□□ -0.37
SMAD4-206ENST00000588860 NEUROD1Q13562 356 aa12.73□□□□□ -0.37
SMAD4-206ENST00000588860 SIN3AQ96ST3 1273 aa12.73□□□□□ -0.37
SMAD4-206ENST00000588860 MAST1Q9Y2H9 1570 aa12.73□□□□□ -0.37
SMAD4-206ENST00000588860 ABCA9Q8IUA7 1624 aa12.72□□□□□ -0.37
SMAD4-206ENST00000588860 PLEKHH2Q8IVE3 1493 aa12.72□□□□□ -0.37
SMAD4-206ENST00000588860 MBD5Q9P267 1494 aa12.72□□□□□ -0.37
SMAD4-206ENST00000588860 ACIN1Q9UKV3 1341 aaKnown RBP12.71□□□□□ -0.37
SMAD4-206ENST00000588860 HNRNPMP52272 730 aaKnown RBP eCLIP12.7□□□□□ -0.383e-7■□□□□ 10.2
SMAD4-206ENST00000588860 ABCC1P33527 1531 aa12.7□□□□□ -0.38
SMAD4-206ENST00000588860 DENND4BO75064 1496 aaPredicted RBP12.7□□□□□ -0.38
SMAD4-206ENST00000588860 PLCH2O75038 1416 aa12.7□□□□□ -0.38
SMAD4-206ENST00000588860 DISP3Q9P2K9 1392 aa12.69□□□□□ -0.38
SMAD4-206ENST00000588860 ARAP3Q8WWN8 1544 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms