RNA–Protein interactions for RNA: ENST00000584400.5

SMARCD2-210, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, human

TSL 3

Gene SMARCD2, Length 1,017 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD2-210	ENST00000584400	FRMPD1	Q5SYB0	1578 aa		43.08	■■■■■ 4.49
SMARCD2-210	ENST00000584400	RICTOR	Q6R327	1708 aa		43.02	■■■■■ 4.48
SMARCD2-210	ENST00000584400	PREX2	Q70Z35	1606 aa		43.01	■■■■■ 4.48
SMARCD2-210	ENST00000584400	POGZ	Q7Z3K3	1410 aa		43.01	■■■■■ 4.48
SMARCD2-210	ENST00000584400	EHBP1L1	Q8N3D4	1523 aa		43.01	■■■■■ 4.48
SMARCD2-210	ENST00000584400	MAGI2	Q86UL8	1455 aa		42.97	■■■■■ 4.47
SMARCD2-210	ENST00000584400	ZMYM4	Q5VZL5	1548 aa		42.97	■■■■■ 4.47
SMARCD2-210	ENST00000584400	CCNB3	Q8WWL7	1395 aa		42.96	■■■■■ 4.47
SMARCD2-210	ENST00000584400	CDC42BPB	Q9Y5S2	1711 aa		42.95	■■■■■ 4.47
SMARCD2-210	ENST00000584400	GPATCH8	Q9UKJ3	1502 aa	Known RBP	42.93	■■■■■ 4.46
SMARCD2-210	ENST00000584400	ZNF518A	Q6AHZ1	1483 aa		42.92	■■■■■ 4.46
SMARCD2-210	ENST00000584400	CDC42BPA	Q5VT25	1732 aa		42.89	■■■■■ 4.46
SMARCD2-210	ENST00000584400	CFDP1	Q9UEE9	299 aa	Predicted RBP	42.89	■■■■■ 4.46
SMARCD2-210	ENST00000584400	TIAM1	Q13009	1591 aa		42.89	■■■■■ 4.46
SMARCD2-210	ENST00000584400	ARHGEF40	Q8TER5	1519 aa		42.87	■■■■■ 4.45
SMARCD2-210	ENST00000584400	ZFYVE16	Q7Z3T8	1539 aa		42.87	■■■■■ 4.45
SMARCD2-210	ENST00000584400	ZNF777	Q9ULD5	760 aa	Predicted RBP	42.86	■■■■■ 4.45
SMARCD2-210	ENST00000584400	MAP3K1	Q13233	1512 aa		42.83	■■■■■ 4.45
SMARCD2-210	ENST00000584400	ABCC1	P33527	1531 aa		42.82	■■■■■ 4.45
SMARCD2-210	ENST00000584400	ARID4B	Q4LE39	1312 aa	Predicted RBP	42.82	■■■■■ 4.45
SMARCD2-210	ENST00000584400	AFAP1	Q8N556	730 aa		42.82	■■■■■ 4.45
SMARCD2-210	ENST00000584400	APLP2	Q06481	763 aa		42.81	■■■■■ 4.44
SMARCD2-210	ENST00000584400	YEATS2	Q9ULM3	1422 aa		42.79	■■■■■ 4.44
SMARCD2-210	ENST00000584400	MYT1L	Q9UL68	1186 aa		42.78	■■■■■ 4.44
SMARCD2-210	ENST00000584400	LRRC9	Q6ZRR7	1453 aa		42.76	■■■■■ 4.44
SMARCD2-210	ENST00000584400	PLEKHH2	Q8IVE3	1493 aa		42.76	■■■■■ 4.44
SMARCD2-210	ENST00000584400	KDM5C	P41229	1560 aa		42.75	■■■■■ 4.43
SMARCD2-210	ENST00000584400	SUPT6H	Q7KZ85	1726 aa	Known RBP	42.74	■■■■■ 4.43
SMARCD2-210	ENST00000584400	ARHGEF12	Q9NZN5	1544 aa		42.73	■■■■■ 4.43
SMARCD2-210	ENST00000584400	NCOA2	Q15596	1464 aa		42.73	■■■■■ 4.43
SMARCD2-210	ENST00000584400	KIAA1107	Q9UPP5	1409 aa		42.72	■■■■■ 4.43
SMARCD2-210	ENST00000584400	TRAPPC8	Q9Y2L5	1435 aa		42.71	■■■■■ 4.43
SMARCD2-210	ENST00000584400	SAMD9L	Q8IVG5	1584 aa		42.7	■■■■■ 4.43
SMARCD2-210	ENST00000584400	ITSN2	Q9NZM3	1697 aa		42.7	■■■■■ 4.43
SMARCD2-210	ENST00000584400	ATP10A	O60312	1499 aa		42.69	■■■■■ 4.42
SMARCD2-210	ENST00000584400	MLH3	Q9UHC1	1453 aa		42.68	■■■■■ 4.42
SMARCD2-210	ENST00000584400	HECW2	Q9P2P5	1572 aa		42.65	■■■■■ 4.42
SMARCD2-210	ENST00000584400	C9orf84	Q5VXU9	1444 aa		42.64	■■■■■ 4.42
SMARCD2-210	ENST00000584400	HNRNPM	P52272	730 aa	Known RBP eCLIP	42.64	■■■■■ 4.42
SMARCD2-210	ENST00000584400	SYCP2	Q9BX26	1530 aa		42.63	■■■■■ 4.42
SMARCD2-210	ENST00000584400	KANK4	Q5T7N3	995 aa	Predicted RBP	42.62	■■■■■ 4.41
SMARCD2-210	ENST00000584400	BCORL1	Q5H9F3	1711 aa		42.56	■■■■■ 4.4
SMARCD2-210	ENST00000584400	SPAG9	O60271	1321 aa	Known RBP	42.55	■■■■■ 4.4
SMARCD2-210	ENST00000584400	ADAMTSL3	P82987	1691 aa		42.54	■■■■■ 4.4
SMARCD2-210	ENST00000584400	ZNF644	Q9H582	1327 aa	Predicted RBP	42.53	■■■■■ 4.4
SMARCD2-210	ENST00000584400	DIP2C	Q9Y2E4	1556 aa		42.49	■■■■■ 4.39
SMARCD2-210	ENST00000584400	RSPH4A	Q5TD94	716 aa		42.48	■■■■■ 4.39
SMARCD2-210	ENST00000584400	RERE	Q9P2R6	1566 aa		42.46	■■■■■ 4.39
SMARCD2-210	ENST00000584400	MLEC	Q14165	292 aa		42.45	■■■■■ 4.39
SMARCD2-210	ENST00000584400	MBD5	Q9P267	1494 aa		42.44	■■■■■ 4.38
SMARCD2-210	ENST00000584400	ABCA6	Q8N139	1617 aa		42.42	■■■■■ 4.38
SMARCD2-210	ENST00000584400	PTPRM	P28827	1452 aa		42.42	■■■■■ 4.38
SMARCD2-210	ENST00000584400	CAMSAP2	Q08AD1	1489 aa		42.42	■■■■■ 4.38
SMARCD2-210	ENST00000584400	KIDINS220	Q9ULH0	1771 aa		42.42	■■■■■ 4.38
SMARCD2-210	ENST00000584400	MADD	Q8WXG6	1647 aa		42.39	■■■■■ 4.38
SMARCD2-210	ENST00000584400	MYOM3	Q5VTT5	1437 aa		42.39	■■■■■ 4.38
SMARCD2-210	ENST00000584400	MIA2	Q96PC5	1412 aa		42.39	■■■■■ 4.38
SMARCD2-210	ENST00000584400	SIGLEC1	Q9BZZ2	1709 aa		42.39	■■■■■ 4.38
SMARCD2-210	ENST00000584400	ATP7A	Q04656	1500 aa		42.38	■■■■■ 4.37
SMARCD2-210	ENST00000584400	CCDC141	Q6ZP82	1450 aa		42.34	■■■■■ 4.37
SMARCD2-210	ENST00000584400	AGL	P35573	1532 aa		42.34	■■■■■ 4.37
SMARCD2-210	ENST00000584400	RTEL1-TNFRSF6B	F6WH68	1400 aa		42.33	■■■■■ 4.37
SMARCD2-210	ENST00000584400	INO80	Q9ULG1	1556 aa	Predicted RBP	42.32	■■■■■ 4.37
SMARCD2-210	ENST00000584400	TSPY4	P0CV99	314 aa		42.28	■■■■■ 4.36
SMARCD2-210	ENST00000584400	TSPY10	P0CW01	314 aa		42.28	■■■■■ 4.36
SMARCD2-210	ENST00000584400	ARHGEF5	Q12774	1597 aa		42.25	■■■■■ 4.35
SMARCD2-210	ENST00000584400	RIMS1	Q86UR5	1692 aa	Known RBP	42.25	■■■■■ 4.35
SMARCD2-210	ENST00000584400	A2M	P01023	1474 aa		42.23	■■■■■ 4.35
SMARCD2-210	ENST00000584400	ESF1	Q9H501	851 aa	Known RBP	42.22	■■■■■ 4.35
SMARCD2-210	ENST00000584400	FER1L4	A9Z1Z3	1794 aa		42.19	■■■■■ 4.34
SMARCD2-210	ENST00000584400	ADGB	Q8N7X0	1667 aa		42.12	■■■■■ 4.33
SMARCD2-210	ENST00000584400	PLXNC1	O60486	1568 aa		42.12	■■■■■ 4.33
SMARCD2-210	ENST00000584400	PLPPR3	Q6T4P5	718 aa		42.11	■■■■■ 4.33
SMARCD2-210	ENST00000584400	DHX29	Q7Z478	1369 aa	Known RBP	42.1	■■■■■ 4.33
SMARCD2-210	ENST00000584400	FGD6	Q6ZV73	1430 aa		42.1	■■■■■ 4.33
SMARCD2-210	ENST00000584400	CNTLN	Q9NXG0	1405 aa		42.06	■■■■■ 4.32
SMARCD2-210	ENST00000584400	PTPN23	Q9H3S7	1636 aa		42.06	■■■■■ 4.32
SMARCD2-210	ENST00000584400	PPP6R1	Q9UPN7	881 aa		42.02	■■■■■ 4.32
SMARCD2-210	ENST00000584400	MAST1	Q9Y2H9	1570 aa		42.01	■■■■■ 4.32
SMARCD2-210	ENST00000584400	TCOF1	Q13428	1488 aa	Known RBP	42.01	■■■■■ 4.32
SMARCD2-210	ENST00000584400	GGT6	Q6P531	493 aa		42	■■■■■ 4.31
SMARCD2-210	ENST00000584400	CEBPA	P49715	358 aa	Predicted RBP	41.96	■■■■■ 4.31
SMARCD2-210	ENST00000584400	KIF3B	O15066	747 aa		41.93	■■■■■ 4.3
SMARCD2-210	ENST00000584400	SHANK2	Q9UPX8	1470 aa		41.92	■■■■■ 4.3
SMARCD2-210	ENST00000584400	ABCC5	O15440	1437 aa		41.92	■■■■■ 4.3
SMARCD2-210	ENST00000584400	DAPK1	P53355	1430 aa		41.89	■■■■■ 4.3
SMARCD2-210	ENST00000584400	FAM50A	Q14320	339 aa	Known RBP	41.86	■■■■■ 4.29
SMARCD2-210	ENST00000584400	LMTK3	Q96Q04	1460 aa		41.85	■■■■■ 4.29
SMARCD2-210	ENST00000584400	ZMYM3	Q14202	1370 aa		41.85	■■■■■ 4.29
SMARCD2-210	ENST00000584400	DNMT1	P26358	1616 aa	Known RBP	41.84	■■■■■ 4.29
SMARCD2-210	ENST00000584400	MROH2A	A6NES4	1674 aa		41.8	■■■■■ 4.28
SMARCD2-210	ENST00000584400	C3	P01024	1663 aa		41.79	■■■■■ 4.28
SMARCD2-210	ENST00000584400	CROCC2	H7BZ55	1655 aa		41.78	■■■■■ 4.28
SMARCD2-210	ENST00000584400	DUOX2	Q9NRD8	1548 aa		41.78	■■■■■ 4.28
SMARCD2-210	ENST00000584400	KIF15	Q9NS87	1388 aa		41.76	■■■■■ 4.28
SMARCD2-210	ENST00000584400	FAM135A	Q9P2D6	1515 aa		41.76	■■■■■ 4.28
SMARCD2-210	ENST00000584400	ANKRD30A	Q9BXX3	1397 aa		41.76	■■■■■ 4.27
SMARCD2-210	ENST00000584400	PPARGC1B	Q86YN6	1023 aa	Known RBP	41.74	■■■■■ 4.27
SMARCD2-210	ENST00000584400	RRP7BP	Q9NSQ0	103 aa		41.74	■■■■■ 4.27
SMARCD2-210	ENST00000584400	UHRF1BP1	Q6BDS2	1440 aa		41.74	■■■■■ 4.27

Retrieved 100 of 20,778 RNA–protein pairs in 152 ms