RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 FAM50AQ14320 339 aaKnown RBP23.11■■□□□ 1.29
SS18-215ENST00000580642 PLEKHH2Q8IVE3 1493 aa23.1■■□□□ 1.29
SS18-215ENST00000580642 MYO5CQ9NQX4 1742 aa23.09■■□□□ 1.29
SS18-215ENST00000580642 EFCAB2Q5VUJ9 269 aa23.09■■□□□ 1.29
SS18-215ENST00000580642 RSPH4AQ5TD94 716 aa23.08■■□□□ 1.29
SS18-215ENST00000580642 KIAA1107Q9UPP5 1409 aa23.07■■□□□ 1.28
SS18-215ENST00000580642 CAMSAP2Q08AD1 1489 aa23.05■■□□□ 1.28
SS18-215ENST00000580642 ARHGAP5Q13017 1502 aa23.05■■□□□ 1.28
SS18-215ENST00000580642 CD109Q6YHK3 1445 aa23.04■■□□□ 1.28
SS18-215ENST00000580642 CDC42BPBQ9Y5S2 1711 aa23.03■■□□□ 1.28
SS18-215ENST00000580642 DIP2BQ9P265 1576 aa22.99■■□□□ 1.27
SS18-215ENST00000580642 ZNF777Q9ULD5 760 aaPredicted RBP22.99■■□□□ 1.27
SS18-215ENST00000580642 ZNF644Q9H582 1327 aaPredicted RBP22.99■■□□□ 1.27
SS18-215ENST00000580642 ARHGEF5Q12774 1597 aa22.98■■□□□ 1.27
SS18-215ENST00000580642 FANCAO15360 1455 aa22.98■■□□□ 1.27
SS18-215ENST00000580642 SAMD9LQ8IVG5 1584 aa22.97■■□□□ 1.27
SS18-215ENST00000580642 CFAP74Q9C0B2 1584 aa22.97■■□□□ 1.27
SS18-215ENST00000580642 DAPK1P53355 1430 aa22.97■■□□□ 1.27
SS18-215ENST00000580642 DNMT1P26358 1616 aaKnown RBP22.97■■□□□ 1.27
SS18-215ENST00000580642 MAP3K4Q9Y6R4 1608 aa22.97■■□□□ 1.27
SS18-215ENST00000580642 FAM69CQ0P6D2 419 aa22.96■■□□□ 1.27
SS18-215ENST00000580642 ABCC5O15440 1437 aa22.96■■□□□ 1.27
SS18-215ENST00000580642 AKNAQ7Z591 1439 aa22.96■■□□□ 1.27
SS18-215ENST00000580642 NEO1Q92859 1461 aa22.96■■□□□ 1.27
SS18-215ENST00000580642 MBD5Q9P267 1494 aa22.96■■□□□ 1.27
SS18-215ENST00000580642 ROCK1Q13464 1354 aa22.95■■□□□ 1.26
SS18-215ENST00000580642 SHANK2Q9UPX8 1470 aa22.95■■□□□ 1.26
SS18-215ENST00000580642 ABCC1P33527 1531 aa22.92■■□□□ 1.26
SS18-215ENST00000580642 CCDC141Q6ZP82 1450 aa22.92■■□□□ 1.26
SS18-215ENST00000580642 ACIN1Q9UKV3 1341 aaKnown RBP22.91■■□□□ 1.26
SS18-215ENST00000580642 HRCP23327 699 aa22.91■■□□□ 1.26
SS18-215ENST00000580642 ITGAEP38570 1179 aa22.91■■□□□ 1.26
SS18-215ENST00000580642 PTPRKQ15262 1439 aa22.91■■□□□ 1.26
SS18-215ENST00000580642 TSPY4P0CV99 314 aa22.9■■□□□ 1.26
SS18-215ENST00000580642 TSPY10P0CW01 314 aa22.9■■□□□ 1.26
SS18-215ENST00000580642 TEX14Q8IWB6 1497 aa22.9■■□□□ 1.26
SS18-215ENST00000580642 HFM1A2PYH4 1435 aa22.88■■□□□ 1.25
SS18-215ENST00000580642 ADGRL2O95490 1459 aa22.87■■□□□ 1.25
SS18-215ENST00000580642 HNRNPMP52272 730 aaKnown RBP eCLIP22.87■■□□□ 1.25
SS18-215ENST00000580642 SYCP2Q9BX26 1530 aa22.87■■□□□ 1.25
SS18-215ENST00000580642 ADGRL1O94910 1474 aa22.86■■□□□ 1.25
SS18-215ENST00000580642 MAST1Q9Y2H9 1570 aa22.84■■□□□ 1.25
SS18-215ENST00000580642 SETD5Q9C0A6 1442 aa22.84■■□□□ 1.25
SS18-215ENST00000580642 ARHGEF12Q9NZN5 1544 aa22.84■■□□□ 1.25
SS18-215ENST00000580642 ANKRD30AQ9BXX3 1397 aa22.84■■□□□ 1.25
SS18-215ENST00000580642 CROCC2H7BZ55 1655 aa22.84■■□□□ 1.25
SS18-215ENST00000580642 C9orf84Q5VXU9 1444 aa22.83■■□□□ 1.25
SS18-215ENST00000580642 SCAPERQ9BY12 1400 aa22.83■■□□□ 1.25
SS18-215ENST00000580642 RTEL1-TNFRSF6BF6WH68 1400 aa22.82■■□□□ 1.24
SS18-215ENST00000580642 NCOA1Q15788 1441 aa22.82■■□□□ 1.24
SS18-215ENST00000580642 NAIPQ13075 1403 aa22.8■■□□□ 1.24
SS18-215ENST00000580642 KIF13AQ9H1H9 1805 aa22.8■■□□□ 1.24
SS18-215ENST00000580642 ZNF518AQ6AHZ1 1483 aa22.79■■□□□ 1.24
SS18-215ENST00000580642 TRAPPC8Q9Y2L5 1435 aa22.78■■□□□ 1.24
SS18-215ENST00000580642 ADGBQ8N7X0 1667 aa22.77■■□□□ 1.24
SS18-215ENST00000580642 POGZQ7Z3K3 1410 aa22.76■■□□□ 1.23
SS18-215ENST00000580642 CHIC2Q9UKJ5 165 aa22.76■■□□□ 1.23
SS18-215ENST00000580642 DENND4BO75064 1496 aaPredicted RBP22.76■■□□□ 1.23
SS18-215ENST00000580642 SPAG9O60271 1321 aaKnown RBP22.75■■□□□ 1.23
SS18-215ENST00000580642 RAB3GAP2Q9H2M9 1393 aa22.74■■□□□ 1.23
SS18-215ENST00000580642 PPRC1Q5VV67 1664 aaKnown RBP22.73■■□□□ 1.23
SS18-215ENST00000580642 GCC2Q8IWJ2 1684 aa22.73■■□□□ 1.23
SS18-215ENST00000580642 PLXNC1O60486 1568 aa22.72■■□□□ 1.23
SS18-215ENST00000580642 MLH3Q9UHC1 1453 aa22.72■■□□□ 1.23
SS18-215ENST00000580642 KDM5CP41229 1560 aa22.72■■□□□ 1.23
SS18-215ENST00000580642 AFAP1Q8N556 730 aa22.71■■□□□ 1.23
SS18-215ENST00000580642 RRP7BPQ9NSQ0 103 aa22.71■■□□□ 1.23
SS18-215ENST00000580642 KIF15Q9NS87 1388 aa22.69■■□□□ 1.22
SS18-215ENST00000580642 ZFYVE16Q7Z3T8 1539 aa22.68■■□□□ 1.22
SS18-215ENST00000580642 INO80Q9ULG1 1556 aaPredicted RBP22.67■■□□□ 1.22
SS18-215ENST00000580642 ANKRD50Q9ULJ7 1429 aa22.66■■□□□ 1.22
SS18-215ENST00000580642 ATP7AQ04656 1500 aa22.66■■□□□ 1.22
SS18-215ENST00000580642 MAGI2Q86UL8 1455 aa22.66■■□□□ 1.22
SS18-215ENST00000580642 DUOX2Q9NRD8 1548 aa22.65■■□□□ 1.22
SS18-215ENST00000580642 TRHP20396 242 aaPredicted RBP22.64■■□□□ 1.21
SS18-215ENST00000580642 ERBINQ96RT1 1412 aa22.63■■□□□ 1.21
SS18-215ENST00000580642 ZMYM4Q5VZL5 1548 aa22.62■■□□□ 1.21
SS18-215ENST00000580642 TSPOAP1O95153 1857 aa22.62■■□□□ 1.21
SS18-215ENST00000580642 CLSPNQ9HAW4 1339 aa22.61■■□□□ 1.21
SS18-215ENST00000580642 RICTORQ6R327 1708 aa22.61■■□□□ 1.21
SS18-215ENST00000580642 HECW2Q9P2P5 1572 aa22.61■■□□□ 1.21
SS18-215ENST00000580642 RAPGEF3O95398 923 aa22.59■■□□□ 1.21
SS18-215ENST00000580642 DHX29Q7Z478 1369 aaKnown RBP22.57■■□□□ 1.2
SS18-215ENST00000580642 KIDINS220Q9ULH0 1771 aa22.56■■□□□ 1.2
SS18-215ENST00000580642 FRMPD1Q5SYB0 1578 aa22.56■■□□□ 1.2
SS18-215ENST00000580642 DHX57Q6P158 1386 aaKnown RBP22.55■■□□□ 1.2
SS18-215ENST00000580642 CCER1Q8TC90 406 aaPredicted RBP22.55■■□□□ 1.2
SS18-215ENST00000580642 MYT1LQ9UL68 1186 aa22.55■■□□□ 1.2
SS18-215ENST00000580642 A2MP01023 1474 aa22.52■■□□□ 1.2
SS18-215ENST00000580642 KDM6BO15054 1643 aa22.51■■□□□ 1.19
SS18-215ENST00000580642 EIF2AK4Q9P2K8 1649 aaKnown RBP22.51■■□□□ 1.19
SS18-215ENST00000580642 COL17A1Q9UMD9 1497 aaPredicted RBP22.51■■□□□ 1.19
SS18-215ENST00000580642 KDM5DQ9BY66 1539 aa22.5■■□□□ 1.19
SS18-215ENST00000580642 TRIM52Q96A61 297 aa22.48■■□□□ 1.19
SS18-215ENST00000580642 REREQ9P2R6 1566 aa22.47■■□□□ 1.19
SS18-215ENST00000580642 ZEB1P37275 1124 aaPredicted RBP22.47■■□□□ 1.19
SS18-215ENST00000580642 DIP2CQ9Y2E4 1556 aa22.46■■□□□ 1.19
SS18-215ENST00000580642 ATP10AO60312 1499 aa22.46■■□□□ 1.19
SS18-215ENST00000580642 UNC13BO14795 1591 aa22.46■■□□□ 1.19
SS18-215ENST00000580642 ABCA6Q8N139 1617 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms