RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 MTUS2Q5JR59 1369 aa26.47■■□□□ 1.83
SREBF1-219ENST00000580540 ARID4BQ4LE39 1312 aaPredicted RBP26.47■■□□□ 1.83
SREBF1-219ENST00000580540 POGZQ7Z3K3 1410 aa26.43■■□□□ 1.82
SREBF1-219ENST00000580540 ZNF777Q9ULD5 760 aaPredicted RBP26.43■■□□□ 1.82
SREBF1-219ENST00000580540 CDC42BPBQ9Y5S2 1711 aa26.42■■□□□ 1.82
SREBF1-219ENST00000580540 MYT1LQ9UL68 1186 aa26.41■■□□□ 1.82
SREBF1-219ENST00000580540 PREX2Q70Z35 1606 aa26.39■■□□□ 1.82
SREBF1-219ENST00000580540 AFAP1Q8N556 730 aa26.39■■□□□ 1.82
SREBF1-219ENST00000580540 ZMYM4Q5VZL5 1548 aa26.39■■□□□ 1.81
SREBF1-219ENST00000580540 ZFYVE16Q7Z3T8 1539 aa26.38■■□□□ 1.81
SREBF1-219ENST00000580540 ARHGEF40Q8TER5 1519 aa26.38■■□□□ 1.81
SREBF1-219ENST00000580540 YEATS2Q9ULM3 1422 aa26.38■■□□□ 1.81
SREBF1-219ENST00000580540 CDC42BPAQ5VT25 1732 aa26.37■■□□□ 1.81
SREBF1-219ENST00000580540 CCNB3Q8WWL7 1395 aa26.37■■□□□ 1.81
SREBF1-219ENST00000580540 VPS8Q8N3P4 1428 aa26.37■■□□□ 1.81
SREBF1-219ENST00000580540 MAGI2Q86UL8 1455 aa26.36■■□□□ 1.81
SREBF1-219ENST00000580540 GPATCH8Q9UKJ3 1502 aaKnown RBP26.34■■□□□ 1.81
SREBF1-219ENST00000580540 CFDP1Q9UEE9 299 aaPredicted RBP26.34■■□□□ 1.81
SREBF1-219ENST00000580540 ZNF518AQ6AHZ1 1483 aa26.33■■□□□ 1.81
SREBF1-219ENST00000580540 EHBP1L1Q8N3D4 1523 aa26.32■■□□□ 1.8
SREBF1-219ENST00000580540 TRAPPC8Q9Y2L5 1435 aa26.29■■□□□ 1.8
SREBF1-219ENST00000580540 ABCC1P33527 1531 aa26.29■■□□□ 1.8
SREBF1-219ENST00000580540 ARHGEF12Q9NZN5 1544 aa26.29■■□□□ 1.8
SREBF1-219ENST00000580540 MLECQ14165 292 aa26.28■■□□□ 1.8
SREBF1-219ENST00000580540 HNRNPMP52272 730 aaKnown RBP eCLIP26.27■■□□□ 1.8
SREBF1-219ENST00000580540 TIAM1Q13009 1591 aa26.25■■□□□ 1.79
SREBF1-219ENST00000580540 ATP10AO60312 1499 aa26.25■■□□□ 1.79
SREBF1-219ENST00000580540 BCORL1Q5H9F3 1711 aa26.25■■□□□ 1.79
SREBF1-219ENST00000580540 ITSN2Q9NZM3 1697 aa26.25■■□□□ 1.79
SREBF1-219ENST00000580540 SAMD9LQ8IVG5 1584 aa26.24■■□□□ 1.79
SREBF1-219ENST00000580540 KDM5CP41229 1560 aa26.24■■□□□ 1.79
SREBF1-219ENST00000580540 ADAMTSL3P82987 1691 aa26.23■■□□□ 1.79
SREBF1-219ENST00000580540 C9orf84Q5VXU9 1444 aa26.22■■□□□ 1.79
SREBF1-219ENST00000580540 HECW2Q9P2P5 1572 aa26.21■■□□□ 1.79
SREBF1-219ENST00000580540 SYCP2Q9BX26 1530 aa26.21■■□□□ 1.79
SREBF1-219ENST00000580540 ZNF644Q9H582 1327 aaPredicted RBP26.2■■□□□ 1.79
SREBF1-219ENST00000580540 NCOA2Q15596 1464 aa26.2■■□□□ 1.78
SREBF1-219ENST00000580540 APLP2Q06481 763 aa26.2■■□□□ 1.78
SREBF1-219ENST00000580540 MADDQ8WXG6 1647 aa26.19■■□□□ 1.78
SREBF1-219ENST00000580540 PLPPR3Q6T4P5 718 aa26.19■■□□□ 1.78
SREBF1-219ENST00000580540 SUPT6HQ7KZ85 1726 aaKnown RBP26.19■■□□□ 1.78
SREBF1-219ENST00000580540 SIGLEC1Q9BZZ2 1709 aa26.19■■□□□ 1.78
SREBF1-219ENST00000580540 PLEKHH2Q8IVE3 1493 aa26.18■■□□□ 1.78
SREBF1-219ENST00000580540 MLH3Q9UHC1 1453 aa26.18■■□□□ 1.78
SREBF1-219ENST00000580540 KANK4Q5T7N3 995 aaPredicted RBP26.18■■□□□ 1.78
SREBF1-219ENST00000580540 PTPRMP28827 1452 aa26.17■■□□□ 1.78
SREBF1-219ENST00000580540 LRRC9Q6ZRR7 1453 aa26.17■■□□□ 1.78
SREBF1-219ENST00000580540 SPAG9O60271 1321 aaKnown RBP26.16■■□□□ 1.78
SREBF1-219ENST00000580540 KIAA1107Q9UPP5 1409 aa26.16■■□□□ 1.78
SREBF1-219ENST00000580540 DIP2CQ9Y2E4 1556 aa26.14■■□□□ 1.78
SREBF1-219ENST00000580540 ABCA6Q8N139 1617 aa26.12■■□□□ 1.77
SREBF1-219ENST00000580540 RIMS1Q86UR5 1692 aaKnown RBP26.12■■□□□ 1.77
SREBF1-219ENST00000580540 MAP3K1Q13233 1512 aa26.11■■□□□ 1.77
SREBF1-219ENST00000580540 KIDINS220Q9ULH0 1771 aa26.1■■□□□ 1.77
SREBF1-219ENST00000580540 ATP7AQ04656 1500 aa26.04■■□□□ 1.76
SREBF1-219ENST00000580540 FER1L4A9Z1Z3 1794 aa26.03■■□□□ 1.76
SREBF1-219ENST00000580540 CAMSAP2Q08AD1 1489 aa26.03■■□□□ 1.76
SREBF1-219ENST00000580540 MBD5Q9P267 1494 aa26.03■■□□□ 1.76
SREBF1-219ENST00000580540 REREQ9P2R6 1566 aa26.03■■□□□ 1.76
SREBF1-219ENST00000580540 ESF1Q9H501 851 aaKnown RBP26.01■■□□□ 1.75
SREBF1-219ENST00000580540 INO80Q9ULG1 1556 aaPredicted RBP25.98■■□□□ 1.75
SREBF1-219ENST00000580540 AGLP35573 1532 aa25.98■■□□□ 1.75
SREBF1-219ENST00000580540 CEBPAP49715 358 aaPredicted RBP25.97■■□□□ 1.75
SREBF1-219ENST00000580540 RSPH4AQ5TD94 716 aa25.97■■□□□ 1.75
SREBF1-219ENST00000580540 CCDC141Q6ZP82 1450 aa25.96■■□□□ 1.75
SREBF1-219ENST00000580540 MYOM3Q5VTT5 1437 aa25.96■■□□□ 1.75
SREBF1-219ENST00000580540 A2MP01023 1474 aa25.94■■□□□ 1.74
SREBF1-219ENST00000580540 TSPY4P0CV99 314 aa25.94■■□□□ 1.74
SREBF1-219ENST00000580540 TSPY10P0CW01 314 aa25.94■■□□□ 1.74
SREBF1-219ENST00000580540 RTEL1-TNFRSF6BF6WH68 1400 aa25.91■■□□□ 1.74
SREBF1-219ENST00000580540 MIA2Q96PC5 1412 aa25.9■■□□□ 1.74
SREBF1-219ENST00000580540 GGT6Q6P531 493 aa25.9■■□□□ 1.74
SREBF1-219ENST00000580540 ARHGEF5Q12774 1597 aa25.87■■□□□ 1.73
SREBF1-219ENST00000580540 ADGBQ8N7X0 1667 aa25.87■■□□□ 1.73
SREBF1-219ENST00000580540 PLXNC1O60486 1568 aa25.85■■□□□ 1.73
SREBF1-219ENST00000580540 DHX29Q7Z478 1369 aaKnown RBP25.84■■□□□ 1.73
SREBF1-219ENST00000580540 HSPA2P54652 639 aa25.84■■□□□ 1.73
SREBF1-219ENST00000580540 LMTK3Q96Q04 1460 aa25.83■■□□□ 1.73
SREBF1-219ENST00000580540 KIF3BO15066 747 aa25.82■■□□□ 1.72
SREBF1-219ENST00000580540 CNTLNQ9NXG0 1405 aa25.81■■□□□ 1.72
SREBF1-219ENST00000580540 PTPN23Q9H3S7 1636 aa25.78■■□□□ 1.72
SREBF1-219ENST00000580540 FGD6Q6ZV73 1430 aa25.78■■□□□ 1.72
SREBF1-219ENST00000580540 C3P01024 1663 aa25.77■■□□□ 1.72
SREBF1-219ENST00000580540 ZMYM3Q14202 1370 aa25.76■■□□□ 1.71
SREBF1-219ENST00000580540 PPARGC1BQ86YN6 1023 aaKnown RBP25.74■■□□□ 1.71
SREBF1-219ENST00000580540 PPP6R1Q9UPN7 881 aa25.73■■□□□ 1.71
SREBF1-219ENST00000580540 CLTCQ00610 1675 aaKnown RBP25.73■■□□□ 1.71
SREBF1-219ENST00000580540 FAM50AQ14320 339 aaKnown RBP25.72■■□□□ 1.71
SREBF1-219ENST00000580540 MAST1Q9Y2H9 1570 aa25.72■■□□□ 1.71
SREBF1-219ENST00000580540 UHRF1BP1Q6BDS2 1440 aa25.71■■□□□ 1.71
SREBF1-219ENST00000580540 SETD1BQ9UPS6 1966 aaKnown RBP25.71■■□□□ 1.71
SREBF1-219ENST00000580540 ABCC5O15440 1437 aa25.71■■□□□ 1.71
SREBF1-219ENST00000580540 PREX1Q8TCU6 1659 aa25.71■■□□□ 1.71
SREBF1-219ENST00000580540 TCOF1Q13428 1488 aaKnown RBP25.69■■□□□ 1.7
SREBF1-219ENST00000580540 CHIC2Q9UKJ5 165 aa25.69■■□□□ 1.7
SREBF1-219ENST00000580540 MROH2AA6NES4 1674 aa25.68■■□□□ 1.7
SREBF1-219ENST00000580540 RRP7BPQ9NSQ0 103 aa25.68■■□□□ 1.7
SREBF1-219ENST00000580540 DAPK1P53355 1430 aa25.68■■□□□ 1.7
SREBF1-219ENST00000580540 WASHC2CQ9Y4E1 1318 aa25.66■■□□□ 1.7
SREBF1-219ENST00000580540 DNMT1P26358 1616 aaKnown RBP25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms