RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 NISCHQ9Y2I1 1504 aa40.57■■■■■ 4.09
SREBF1-219ENST00000580540 CCDC180Q9P1Z9 1646 aa36.1■■■■□ 3.37
SREBF1-219ENST00000580540 ABCC9O60706 1549 aa35.74■■■■□ 3.31
SREBF1-219ENST00000580540 DCAF8L2P0C7V8 631 aa34.27■■■■□ 3.08
SREBF1-219ENST00000580540 RB1CC1Q8TDY2 1594 aa34.17■■■■□ 3.06
SREBF1-219ENST00000580540 NACADO15069 1562 aa34.05■■■■□ 3.04
SREBF1-219ENST00000580540 ZCCHC6Q5VYS8 1495 aaKnown RBP33.71■■■□□ 2.99
SREBF1-219ENST00000580540 MYO15BQ96JP2 1530 aa33.69■■■□□ 2.98
SREBF1-219ENST00000580540 DCAF1Q9Y4B6 1507 aa33.47■■■□□ 2.95
SREBF1-219ENST00000580540 PABPN1Q86U42 306 aaKnown RBP eCLIP33.43■■■□□ 2.94
SREBF1-219ENST00000580540 UNC13AQ9UPW8 1703 aa33.36■■■□□ 2.93
SREBF1-219ENST00000580540 BICRAQ9NZM4 1560 aa33.12■■■□□ 2.89
SREBF1-219ENST00000580540 SCRIBQ14160 1630 aa33.06■■■□□ 2.88
SREBF1-219ENST00000580540 DNAJC5BQ9UF47 199 aa33.04■■■□□ 2.88
SREBF1-219ENST00000580540 SHROOM4Q9ULL8 1493 aa32.67■■■□□ 2.82
SREBF1-219ENST00000580540 EIF4G1Q04637 1599 aaKnown RBP32.29■■■□□ 2.76
SREBF1-219ENST00000580540 CC2D2AQ9P2K1 1620 aa32.25■■■□□ 2.75
SREBF1-219ENST00000580540 CECR2Q9BXF3 1484 aa32.1■■■□□ 2.73
SREBF1-219ENST00000580540 SMARCA4P51532 1647 aa31.53■■■□□ 2.64
SREBF1-219ENST00000580540 BAZ1AQ9NRL2 1556 aaPredicted RBP31.45■■■□□ 2.63
SREBF1-219ENST00000580540 ATAD2BQ9ULI0 1458 aa31.44■■■□□ 2.62
SREBF1-219ENST00000580540 NCAPD3P42695 1498 aa31.43■■■□□ 2.62
SREBF1-219ENST00000580540 SMARCA2P51531 1590 aa31.37■■■□□ 2.61
SREBF1-219ENST00000580540 MROH2BQ7Z745 1585 aa31.3■■■□□ 2.6
SREBF1-219ENST00000580540 HMGXB3Q12766 1538 aa31.22■■■□□ 2.59
SREBF1-219ENST00000580540 BAZ1BQ9UIG0 1483 aaKnown RBP31.2■■■□□ 2.58
SREBF1-219ENST00000580540 PEG3Q9GZU2 1588 aa31.14■■■□□ 2.58
SREBF1-219ENST00000580540 WIZO95785 1651 aa30.95■■■□□ 2.55
SREBF1-219ENST00000580540 RSF1Q96T23 1441 aaPredicted RBP30.85■■■□□ 2.53
SREBF1-219ENST00000580540 ERCC6Q03468 1493 aa30.83■■■□□ 2.53
SREBF1-219ENST00000580540 NESP48681 1621 aa30.83■■■□□ 2.53
SREBF1-219ENST00000580540 LAMC3Q9Y6N6 1575 aa30.63■■■□□ 2.49
SREBF1-219ENST00000580540 TOP2AP11388 1531 aaKnown RBP30.57■■■□□ 2.48
SREBF1-219ENST00000580540 CADPSQ9ULU8 1353 aa30.55■■■□□ 2.48
SREBF1-219ENST00000580540 PDS5BQ9NTI5 1447 aa30.5■■■□□ 2.47
SREBF1-219ENST00000580540 CUX2O14529 1486 aa30.49■■■□□ 2.47
SREBF1-219ENST00000580540 KIF21AQ7Z4S6 1674 aa30.41■■■□□ 2.46
SREBF1-219ENST00000580540 THOC2Q8NI27 1593 aaKnown RBP30.32■■■□□ 2.45
SREBF1-219ENST00000580540 CFTRP13569 1480 aa30.27■■■□□ 2.44
SREBF1-219ENST00000580540 CCDC88BA6NC98 1476 aa30.26■■■□□ 2.44
SREBF1-219ENST00000580540 FANCD2Q9BXW9 1451 aa30.2■■■□□ 2.43
SREBF1-219ENST00000580540 MRC2Q9UBG0 1479 aa30.19■■■□□ 2.42
SREBF1-219ENST00000580540 CEP164Q9UPV0 1460 aa30.19■■■□□ 2.42
SREBF1-219ENST00000580540 SUPT5HO00267 1087 aaKnown RBP30.07■■■□□ 2.4
SREBF1-219ENST00000580540 WDR62O43379 1518 aa30.05■■■□□ 2.4
SREBF1-219ENST00000580540 PRDM2Q13029 1718 aa29.96■■■□□ 2.39
SREBF1-219ENST00000580540 DNAJC5Q9H3Z4 198 aa29.93■■■□□ 2.38
SREBF1-219ENST00000580540 URB2Q14146 1524 aaKnown RBP29.91■■■□□ 2.38
SREBF1-219ENST00000580540 TOPBP1Q92547 1522 aa29.68■■■□□ 2.34
SREBF1-219ENST00000580540 ABCC8Q09428 1581 aa29.64■■■□□ 2.33
SREBF1-219ENST00000580540 DNMBPQ6XZF7 1577 aa29.6■■■□□ 2.33
SREBF1-219ENST00000580540 IFT140Q96RY7 1462 aa29.55■■■□□ 2.32
SREBF1-219ENST00000580540 ZNF608Q9ULD9 1512 aaPredicted RBP29.47■■■□□ 2.31
SREBF1-219ENST00000580540 POLA1P09884 1462 aaPredicted RBP29.41■■■□□ 2.3
SREBF1-219ENST00000580540 CUX1P39880 1505 aa29.36■■■□□ 2.29
SREBF1-219ENST00000580540 RAD54L2Q9Y4B4 1467 aa29.35■■■□□ 2.29
SREBF1-219ENST00000580540 SOGA1O94964 1423 aa29.34■■■□□ 2.29
SREBF1-219ENST00000580540 TARBP1Q13395 1621 aaKnown RBP29.33■■■□□ 2.29
SREBF1-219ENST00000580540 FGD5Q6ZNL6 1462 aa29.32■■■□□ 2.28
SREBF1-219ENST00000580540 AQRO60306 1485 aaKnown RBP eCLIP29.31■■■□□ 2.281e-15■■■■□ 25.7
SREBF1-219ENST00000580540 OSCARQ8IYS5 282 aa29.3■■■□□ 2.28
SREBF1-219ENST00000580540 EIF4G3O43432 1585 aaKnown RBP29.3■■■□□ 2.28
SREBF1-219ENST00000580540 TDRD9Q8NDG6 1382 aaKnown RBP29.24■■■□□ 2.27
SREBF1-219ENST00000580540 FBLN2P98095 1184 aa29.13■■■□□ 2.25
SREBF1-219ENST00000580540 WRNQ14191 1432 aaPredicted RBP eCLIP29.11■■■□□ 2.25
SREBF1-219ENST00000580540 WDR97A6NE52 1622 aa29.02■■■□□ 2.24
SREBF1-219ENST00000580540 SYNJ1O43426 1573 aa29.02■■■□□ 2.24
SREBF1-219ENST00000580540 TOP2BQ02880 1626 aa29.01■■■□□ 2.23
SREBF1-219ENST00000580540 SNAPC4Q5SXM2 1469 aa29■■■□□ 2.23
SREBF1-219ENST00000580540 BIVM-ERCC5R4GMW8 1640 aa28.99■■■□□ 2.23
SREBF1-219ENST00000580540 CHD1O14646 1710 aa28.99■■■□□ 2.23
SREBF1-219ENST00000580540 ABCA10Q8WWZ4 1543 aa28.99■■■□□ 2.23
SREBF1-219ENST00000580540 GRIN2BQ13224 1484 aa28.98■■■□□ 2.23
SREBF1-219ENST00000580540 TRIM41Q8WV44 630 aa28.98■■■□□ 2.23
SREBF1-219ENST00000580540 GAPVD1Q14C86 1478 aa28.97■■■□□ 2.23
SREBF1-219ENST00000580540 CHMP7Q8WUX9 453 aaPredicted RBP28.94■■■□□ 2.22
SREBF1-219ENST00000580540 MAGI1Q96QZ7 1491 aaPredicted RBP28.91■■■□□ 2.22
SREBF1-219ENST00000580540 PBRM1Q86U86 1689 aa28.87■■■□□ 2.21
SREBF1-219ENST00000580540 ABCA5Q8WWZ7 1642 aa28.86■■■□□ 2.21
SREBF1-219ENST00000580540 SYNJ2O15056 1496 aa28.81■■■□□ 2.2
SREBF1-219ENST00000580540 RIMBP3CA6NJZ7 1639 aa28.78■■■□□ 2.2
SREBF1-219ENST00000580540 RIMBP3BA6NNM3 1639 aa28.78■■■□□ 2.2
SREBF1-219ENST00000580540 RIMBP3Q9UFD9 1639 aa28.78■■■□□ 2.2
SREBF1-219ENST00000580540 ARHGEF11O15085 1522 aa28.74■■■□□ 2.19
SREBF1-219ENST00000580540 ADAMTS12P58397 1594 aa28.63■■■□□ 2.17
SREBF1-219ENST00000580540 CYB5RLQ6IPT4 315 aa28.63■■■□□ 2.17
SREBF1-219ENST00000580540 CLASP1Q7Z460 1538 aa28.63■■■□□ 2.17
SREBF1-219ENST00000580540 ERICH3Q5RHP9 1530 aa28.62■■■□□ 2.17
SREBF1-219ENST00000580540 FHAD1B1AJZ9 1412 aa28.61■■■□□ 2.17
SREBF1-219ENST00000580540 GRIN2AQ12879 1464 aa28.6■■■□□ 2.17
SREBF1-219ENST00000580540 KIF27Q86VH2 1401 aa28.53■■■□□ 2.16
SREBF1-219ENST00000580540 ARAP1Q96P48 1450 aa28.5■■■□□ 2.15
SREBF1-219ENST00000580540 CEP170Q5SW79 1584 aa28.46■■■□□ 2.15
SREBF1-219ENST00000580540 NUP160Q12769 1436 aa28.46■■■□□ 2.15
SREBF1-219ENST00000580540 IGF1RP08069 1367 aa28.45■■■□□ 2.14
SREBF1-219ENST00000580540 CUL7Q14999 1698 aa28.31■■■□□ 2.12
SREBF1-219ENST00000580540 CARMIL1Q5VZK9 1371 aa28.3■■■□□ 2.12
SREBF1-219ENST00000580540 ERCC6L2Q5T890 1561 aa28.28■■■□□ 2.12
SREBF1-219ENST00000580540 JPH4Q96JJ6 628 aa28.27■■■□□ 2.12
SREBF1-219ENST00000580540 SHROOM2Q13796 1616 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 140.5 ms