RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PLCH2O75038 1416 aa38.03■■■■□ 3.68
SHMT1-207ENST00000580002 PREX2Q70Z35 1606 aa38.03■■■■□ 3.68
SHMT1-207ENST00000580002 ABCA9Q8IUA7 1624 aa38.03■■■■□ 3.68
SHMT1-207ENST00000580002 CAMSAP2Q08AD1 1489 aa38.01■■■■□ 3.67
SHMT1-207ENST00000580002 PTPRKQ15262 1439 aa38■■■■□ 3.67
SHMT1-207ENST00000580002 MYO5CQ9NQX4 1742 aa37.99■■■■□ 3.67
SHMT1-207ENST00000580002 ARHGAP5Q13017 1502 aa37.99■■■■□ 3.67
SHMT1-207ENST00000580002 FAM69CQ0P6D2 419 aa37.94■■■■□ 3.66
SHMT1-207ENST00000580002 HNRNPMP52272 730 aaKnown RBP eCLIP37.93■■■■□ 3.66
SHMT1-207ENST00000580002 SAMD9LQ8IVG5 1584 aa37.92■■■■□ 3.66
SHMT1-207ENST00000580002 CD109Q6YHK3 1445 aa37.91■■■■□ 3.66
SHMT1-207ENST00000580002 EFCAB2Q5VUJ9 269 aa37.91■■■■□ 3.66
SHMT1-207ENST00000580002 CHIC2Q9UKJ5 165 aa37.89■■■■□ 3.66
SHMT1-207ENST00000580002 ABCC5O15440 1437 aa37.87■■■■□ 3.65
SHMT1-207ENST00000580002 DIP2BQ9P265 1576 aa37.87■■■■□ 3.65
SHMT1-207ENST00000580002 DAPK1P53355 1430 aa37.83■■■■□ 3.65
SHMT1-207ENST00000580002 ARHGEF12Q9NZN5 1544 aa37.82■■■■□ 3.64
SHMT1-207ENST00000580002 GLI2P10070 1586 aa37.81■■■■□ 3.64
SHMT1-207ENST00000580002 FANCAO15360 1455 aa37.81■■■■□ 3.64
SHMT1-207ENST00000580002 MBD5Q9P267 1494 aa37.81■■■■□ 3.64
SHMT1-207ENST00000580002 ARAP3Q8WWN8 1544 aa37.79■■■■□ 3.64
SHMT1-207ENST00000580002 DNMT1P26358 1616 aaKnown RBP37.78■■■■□ 3.64
SHMT1-207ENST00000580002 SYCP2Q9BX26 1530 aa37.77■■■■□ 3.64
SHMT1-207ENST00000580002 MAP3K4Q9Y6R4 1608 aa37.76■■■■□ 3.63
SHMT1-207ENST00000580002 RRP7BPQ9NSQ0 103 aa37.73■■■■□ 3.63
SHMT1-207ENST00000580002 KIAA1107Q9UPP5 1409 aa37.7■■■■□ 3.63
SHMT1-207ENST00000580002 AKNAQ7Z591 1439 aa37.69■■■■□ 3.62
SHMT1-207ENST00000580002 ABCC1P33527 1531 aa37.69■■■■□ 3.62
SHMT1-207ENST00000580002 KIF13AQ9H1H9 1805 aa37.69■■■■□ 3.62
SHMT1-207ENST00000580002 TRAPPC8Q9Y2L5 1435 aa37.68■■■■□ 3.62
SHMT1-207ENST00000580002 PLEKHH2Q8IVE3 1493 aa37.66■■■■□ 3.62
SHMT1-207ENST00000580002 ARHGEF5Q12774 1597 aa37.65■■■■□ 3.62
SHMT1-207ENST00000580002 AFAP1Q8N556 730 aa37.65■■■■□ 3.62
SHMT1-207ENST00000580002 SCAPERQ9BY12 1400 aa37.64■■■■□ 3.62
SHMT1-207ENST00000580002 ADGRL1O94910 1474 aa37.64■■■■□ 3.62
SHMT1-207ENST00000580002 TSPOAP1O95153 1857 aa37.63■■■■□ 3.61
SHMT1-207ENST00000580002 CCDC141Q6ZP82 1450 aa37.63■■■■□ 3.61
SHMT1-207ENST00000580002 TSPY4P0CV99 314 aa37.6■■■■□ 3.61
SHMT1-207ENST00000580002 TSPY10P0CW01 314 aa37.6■■■■□ 3.61
SHMT1-207ENST00000580002 SETD5Q9C0A6 1442 aa37.6■■■■□ 3.61
SHMT1-207ENST00000580002 CROCC2H7BZ55 1655 aa37.6■■■■□ 3.61
SHMT1-207ENST00000580002 C9orf84Q5VXU9 1444 aa37.59■■■■□ 3.61
SHMT1-207ENST00000580002 RSPH4AQ5TD94 716 aa37.58■■■■□ 3.61
SHMT1-207ENST00000580002 PPRC1Q5VV67 1664 aaKnown RBP37.58■■■■□ 3.61
SHMT1-207ENST00000580002 NAIPQ13075 1403 aa37.58■■■■□ 3.61
SHMT1-207ENST00000580002 RAB3GAP2Q9H2M9 1393 aa37.57■■■■□ 3.61
SHMT1-207ENST00000580002 HFM1A2PYH4 1435 aa37.55■■■■□ 3.6
SHMT1-207ENST00000580002 TRHP20396 242 aaPredicted RBP37.54■■■■□ 3.6
SHMT1-207ENST00000580002 NCOA1Q15788 1441 aa37.53■■■■□ 3.6
SHMT1-207ENST00000580002 NEO1Q92859 1461 aa37.53■■■■□ 3.6
SHMT1-207ENST00000580002 ROCK1Q13464 1354 aa37.53■■■■□ 3.6
SHMT1-207ENST00000580002 SHANK2Q9UPX8 1470 aa37.52■■■■□ 3.6
SHMT1-207ENST00000580002 RAPGEF3O95398 923 aa37.49■■■■□ 3.59
SHMT1-207ENST00000580002 CFAP74Q9C0B2 1584 aa37.49■■■■□ 3.59
SHMT1-207ENST00000580002 ADGRL2O95490 1459 aa37.48■■■■□ 3.59
SHMT1-207ENST00000580002 KDM6BO15054 1643 aa37.46■■■■□ 3.59
SHMT1-207ENST00000580002 ANKRD30AQ9BXX3 1397 aa37.46■■■■□ 3.59
SHMT1-207ENST00000580002 SPAG9O60271 1321 aaKnown RBP37.44■■■■□ 3.58
SHMT1-207ENST00000580002 ADGBQ8N7X0 1667 aa37.43■■■■□ 3.58
SHMT1-207ENST00000580002 MAST1Q9Y2H9 1570 aa37.4■■■■□ 3.58
SHMT1-207ENST00000580002 POGZQ7Z3K3 1410 aa37.4■■■■□ 3.58
SHMT1-207ENST00000580002 TEX14Q8IWB6 1497 aa37.39■■■■□ 3.58
SHMT1-207ENST00000580002 DENND4BO75064 1496 aaPredicted RBP37.38■■■■□ 3.57
SHMT1-207ENST00000580002 GCC2Q8IWJ2 1684 aa37.38■■■■□ 3.57
SHMT1-207ENST00000580002 KIF15Q9NS87 1388 aa37.37■■■■□ 3.57
SHMT1-207ENST00000580002 MYT1LQ9UL68 1186 aa37.35■■■■□ 3.57
SHMT1-207ENST00000580002 ZNF518AQ6AHZ1 1483 aa37.35■■■■□ 3.57
SHMT1-207ENST00000580002 COL17A1Q9UMD9 1497 aaPredicted RBP37.33■■■■□ 3.57
SHMT1-207ENST00000580002 ZFYVE16Q7Z3T8 1539 aa37.32■■■■□ 3.56
SHMT1-207ENST00000580002 CCER1Q8TC90 406 aaPredicted RBP37.32■■■■□ 3.56
SHMT1-207ENST00000580002 HRCP23327 699 aa37.31■■■■□ 3.56
SHMT1-207ENST00000580002 RTEL1-TNFRSF6BF6WH68 1400 aa37.3■■■■□ 3.56
SHMT1-207ENST00000580002 ANKRD50Q9ULJ7 1429 aa37.28■■■■□ 3.56
SHMT1-207ENST00000580002 ATP7AQ04656 1500 aa37.28■■■■□ 3.56
SHMT1-207ENST00000580002 KDM5CP41229 1560 aa37.27■■■■□ 3.56
SHMT1-207ENST00000580002 INO80Q9ULG1 1556 aaPredicted RBP37.27■■■■□ 3.56
SHMT1-207ENST00000580002 DHX57Q6P158 1386 aaKnown RBP37.26■■■■□ 3.56
SHMT1-207ENST00000580002 FRMPD1Q5SYB0 1578 aa37.26■■■■□ 3.55
SHMT1-207ENST00000580002 RICTORQ6R327 1708 aa37.26■■■■□ 3.55
SHMT1-207ENST00000580002 PLXNC1O60486 1568 aa37.24■■■■□ 3.55
SHMT1-207ENST00000580002 KIDINS220Q9ULH0 1771 aa37.24■■■■□ 3.55
SHMT1-207ENST00000580002 TRIM52Q96A61 297 aa37.22■■■■□ 3.55
SHMT1-207ENST00000580002 MLH3Q9UHC1 1453 aa37.19■■■■□ 3.54
SHMT1-207ENST00000580002 HECW2Q9P2P5 1572 aa37.15■■■■□ 3.54
SHMT1-207ENST00000580002 DUOX2Q9NRD8 1548 aa37.14■■■■□ 3.54
SHMT1-207ENST00000580002 YEATS2Q9ULM3 1422 aa37.14■■■■□ 3.54
SHMT1-207ENST00000580002 ABCA6Q8N139 1617 aa37.08■■■■□ 3.53
SHMT1-207ENST00000580002 DHX29Q7Z478 1369 aaKnown RBP37.07■■■■□ 3.53
SHMT1-207ENST00000580002 ERBINQ96RT1 1412 aa37.05■■■■□ 3.52
SHMT1-207ENST00000580002 ZMYM4Q5VZL5 1548 aa37.04■■■■□ 3.52
SHMT1-207ENST00000580002 GRWD1Q9BQ67 446 aaKnown RBP eCLIP37.03■■■■□ 3.52
SHMT1-207ENST00000580002 MPHOSPH9Q99550 1183 aa37.02■■■■□ 3.52
SHMT1-207ENST00000580002 A2MP01023 1474 aa37.02■■■■□ 3.52
SHMT1-207ENST00000580002 DIP2CQ9Y2E4 1556 aa37.02■■■■□ 3.52
SHMT1-207ENST00000580002 KIF3BO15066 747 aa37■■■■□ 3.51
SHMT1-207ENST00000580002 NUP155O75694 1391 aa37■■■■□ 3.51
SHMT1-207ENST00000580002 PZPP20742 1482 aa36.98■■■■□ 3.51
SHMT1-207ENST00000580002 FOXD1Q16676 465 aa36.98■■■■□ 3.51
SHMT1-207ENST00000580002 SLC4A1APQ9BWU0 796 aaKnown RBP36.95■■■■□ 3.51
SHMT1-207ENST00000580002 MAGI2Q86UL8 1455 aa36.93■■■■□ 3.5
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms