RNA–Protein interactions for RNA: ENST00000578317.5

COPS3-215, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 1,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-215ENST00000578317 PLB1Q6P1J6 1458 aa12.51□□□□□ -0.41
COPS3-215ENST00000578317 UHRF1BP1LA0JNW5 1464 aa12.49□□□□□ -0.41
COPS3-215ENST00000578317 ATP1B4Q9UN42 357 aaPredicted RBP12.49□□□□□ -0.41
COPS3-215ENST00000578317 ABCA8O94911 1581 aa12.49□□□□□ -0.41
COPS3-215ENST00000578317 MAP3K1Q13233 1512 aa12.48□□□□□ -0.41
COPS3-215ENST00000578317 CYB5RLQ6IPT4 315 aa12.48□□□□□ -0.41
COPS3-215ENST00000578317 NUP153P49790 1475 aaKnown RBP12.47□□□□□ -0.41
COPS3-215ENST00000578317 CDK11AQ9UQ88 783 aaPredicted RBP12.45□□□□□ -0.42
COPS3-215ENST00000578317 ATP10BO94823 1461 aa12.45□□□□□ -0.42
COPS3-215ENST00000578317 CCDC18Q5T9S5 1454 aa12.45□□□□□ -0.42
COPS3-215ENST00000578317 EPRSP07814 1512 aaKnown RBP12.44□□□□□ -0.42
COPS3-215ENST00000578317 ABCC2Q92887 1545 aa12.44□□□□□ -0.42
COPS3-215ENST00000578317 PCF11O94913 1555 aaKnown RBP12.44□□□□□ -0.42
COPS3-215ENST00000578317 SPDYE1Q8NFV5 336 aaPredicted RBP12.44□□□□□ -0.42
COPS3-215ENST00000578317 RAPGEF6Q8TEU7 1601 aa12.44□□□□□ -0.42
COPS3-215ENST00000578317 KDM5BQ9UGL1 1544 aa12.42□□□□□ -0.42
COPS3-215ENST00000578317 NPM1P06748 294 aaKnown RBP eCLIP12.42□□□□□ -0.42
COPS3-215ENST00000578317 PKD2Q13563 968 aa12.42□□□□□ -0.42
COPS3-215ENST00000578317 KANK4Q5T7N3 995 aaPredicted RBP12.42□□□□□ -0.42
COPS3-215ENST00000578317 HECW1Q76N89 1606 aa12.42□□□□□ -0.42
COPS3-215ENST00000578317 PLEKHD1A6NEE1 506 aa12.41□□□□□ -0.42
COPS3-215ENST00000578317 ADCY10Q96PN6 1610 aa12.41□□□□□ -0.42
COPS3-215ENST00000578317 ARID3CA6NKF2 412 aa12.4□□□□□ -0.42
COPS3-215ENST00000578317 LRRC9Q6ZRR7 1453 aa12.38□□□□□ -0.43
COPS3-215ENST00000578317 PITPNM1O00562 1244 aa12.38□□□□□ -0.43
COPS3-215ENST00000578317 MIER1Q8N108 512 aa12.38□□□□□ -0.43
COPS3-215ENST00000578317 CLEC11AQ9Y240 323 aa12.38□□□□□ -0.43
COPS3-215ENST00000578317 TIAM1Q13009 1591 aa12.38□□□□□ -0.43
COPS3-215ENST00000578317 MTUS2Q5JR59 1369 aa12.38□□□□□ -0.43
COPS3-215ENST00000578317 PLCD3Q8N3E9 789 aa12.37□□□□□ -0.43
COPS3-215ENST00000578317 CDK13Q14004 1512 aaKnown RBP12.37□□□□□ -0.43
COPS3-215ENST00000578317 TROQ12816 1431 aaPredicted RBP12.35□□□□□ -0.43
COPS3-215ENST00000578317 HAP1P54257 671 aaPredicted RBP12.34□□□□□ -0.43
COPS3-215ENST00000578317 KLHL34Q8N239 644 aa12.34□□□□□ -0.43
COPS3-215ENST00000578317 SPOCK2Q92563 424 aa12.34□□□□□ -0.43
COPS3-215ENST00000578317 PPARGC1BQ86YN6 1023 aaKnown RBP12.33□□□□□ -0.43
COPS3-215ENST00000578317 MAGI3Q5TCQ9 1506 aa12.31□□□□□ -0.44
COPS3-215ENST00000578317 CFAP43Q8NDM7 1665 aa12.3□□□□□ -0.44
COPS3-215ENST00000578317 ZCCHC11Q5TAX3 1644 aaKnown RBP12.3□□□□□ -0.44
COPS3-215ENST00000578317 EHBP1L1Q8N3D4 1523 aa12.3□□□□□ -0.44
COPS3-215ENST00000578317 ASXL2Q76L83 1435 aa12.3□□□□□ -0.44
COPS3-215ENST00000578317 PRR29P0C7W0 189 aa12.29□□□□□ -0.44
COPS3-215ENST00000578317 LRRIQ1Q96JM4 1722 aa12.29□□□□□ -0.44
COPS3-215ENST00000578317 WDR7Q9Y4E6 1490 aa12.29□□□□□ -0.44
COPS3-215ENST00000578317 MAPKBP1O60336 1514 aa12.28□□□□□ -0.44
COPS3-215ENST00000578317 KCNH8Q96L42 1107 aa12.28□□□□□ -0.44
COPS3-215ENST00000578317 CREBZFQ9NS37 354 aa12.27□□□□□ -0.44
COPS3-215ENST00000578317 NCOA2Q15596 1464 aa12.27□□□□□ -0.45
COPS3-215ENST00000578317 PHLDB1Q86UU1 1377 aa12.25□□□□□ -0.45
COPS3-215ENST00000578317 ABCC10Q5T3U5 1492 aa12.24□□□□□ -0.45
COPS3-215ENST00000578317 ECM2O94769 699 aaPredicted RBP12.24□□□□□ -0.45
COPS3-215ENST00000578317 CCNB3Q8WWL7 1395 aa12.24□□□□□ -0.45
COPS3-215ENST00000578317 TRIM26Q12899 539 aaPredicted RBP12.23□□□□□ -0.45
COPS3-215ENST00000578317 MIA2Q96PC5 1412 aa12.23□□□□□ -0.45
COPS3-215ENST00000578317 MNX1P50219 401 aaPredicted RBP12.22□□□□□ -0.45
COPS3-215ENST00000578317 GPATCH8Q9UKJ3 1502 aaKnown RBP12.22□□□□□ -0.45
COPS3-215ENST00000578317 MYOM3Q5VTT5 1437 aa12.22□□□□□ -0.45
COPS3-215ENST00000578317 PLEKHG5O94827 1062 aa12.21□□□□□ -0.46
COPS3-215ENST00000578317 CFDP1Q9UEE9 299 aaPredicted RBP12.21□□□□□ -0.46
COPS3-215ENST00000578317 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.21□□□□□ -0.46
COPS3-215ENST00000578317 RRBP1Q9P2E9 1410 aaKnown RBP12.21□□□□□ -0.46
COPS3-215ENST00000578317 SUPT6HQ7KZ85 1726 aaKnown RBP12.21□□□□□ -0.46
COPS3-215ENST00000578317 KIF14Q15058 1648 aa12.2□□□□□ -0.46
COPS3-215ENST00000578317 PLCH2O75038 1416 aa12.2□□□□□ -0.46
COPS3-215ENST00000578317 DIP2BQ9P265 1576 aa12.2□□□□□ -0.46
COPS3-215ENST00000578317 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.19□□□□□ -0.466e-8■■■■□ 20.3
COPS3-215ENST00000578317 FAM69CQ0P6D2 419 aa12.19□□□□□ -0.46
COPS3-215ENST00000578317 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.19□□□□□ -0.46
COPS3-215ENST00000578317 FGD6Q6ZV73 1430 aa12.19□□□□□ -0.46
COPS3-215ENST00000578317 KIF13AQ9H1H9 1805 aa12.19□□□□□ -0.46
COPS3-215ENST00000578317 EFCAB2Q5VUJ9 269 aa12.19□□□□□ -0.46
COPS3-215ENST00000578317 VSIG10Q8N0Z9 540 aa12.19□□□□□ -0.46
COPS3-215ENST00000578317 BBXQ8WY36 941 aaPredicted RBP12.19□□□□□ -0.46
COPS3-215ENST00000578317 ZBTB47Q9UFB7 747 aaPredicted RBP12.19□□□□□ -0.46
COPS3-215ENST00000578317 CD109Q6YHK3 1445 aa12.17□□□□□ -0.46
COPS3-215ENST00000578317 GLI2P10070 1586 aa12.17□□□□□ -0.46
COPS3-215ENST00000578317 ARAP3Q8WWN8 1544 aa12.16□□□□□ -0.46
COPS3-215ENST00000578317 RSPH4AQ5TD94 716 aa12.15□□□□□ -0.46
COPS3-215ENST00000578317 ABCA9Q8IUA7 1624 aa12.15□□□□□ -0.46
COPS3-215ENST00000578317 TCOF1Q13428 1488 aaKnown RBP12.14□□□□□ -0.47
COPS3-215ENST00000578317 BCANQ96GW7 911 aa12.14□□□□□ -0.47
COPS3-215ENST00000578317 ZNF644Q9H582 1327 aaPredicted RBP12.13□□□□□ -0.47
COPS3-215ENST00000578317 KIAA1107Q9UPP5 1409 aa12.13□□□□□ -0.47
COPS3-215ENST00000578317 NUBP1P53384 320 aa12.13□□□□□ -0.47
COPS3-215ENST00000578317 TTC37Q6PGP7 1564 aa12.13□□□□□ -0.47
COPS3-215ENST00000578317 FAM50AQ14320 339 aaKnown RBP12.12□□□□□ -0.47
COPS3-215ENST00000578317 CHADLQ6NUI6 762 aa12.12□□□□□ -0.47
COPS3-215ENST00000578317 ZNF777Q9ULD5 760 aaPredicted RBP12.12□□□□□ -0.47
COPS3-215ENST00000578317 MAP3K4Q9Y6R4 1608 aa12.11□□□□□ -0.47
COPS3-215ENST00000578317 PLEKHH2Q8IVE3 1493 aa12.1□□□□□ -0.47
COPS3-215ENST00000578317 FXR2P51116 673 aaKnown RBP eCLIP12.1□□□□□ -0.47
COPS3-215ENST00000578317 CHRDL2Q6WN34 429 aa12.1□□□□□ -0.47
COPS3-215ENST00000578317 FANCAO15360 1455 aa12.09□□□□□ -0.47
COPS3-215ENST00000578317 ARHGAP5Q13017 1502 aa12.09□□□□□ -0.47
COPS3-215ENST00000578317 PPRC1Q5VV67 1664 aaKnown RBP12.09□□□□□ -0.47
COPS3-215ENST00000578317 NEO1Q92859 1461 aa12.09□□□□□ -0.47
COPS3-215ENST00000578317 RGL2O15211 777 aa12.08□□□□□ -0.48
COPS3-215ENST00000578317 HNRNPMP52272 730 aaKnown RBP eCLIP12.08□□□□□ -0.48
COPS3-215ENST00000578317 PCGF6Q9BYE7 350 aa12.08□□□□□ -0.48
COPS3-215ENST00000578317 MBD5Q9P267 1494 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms