RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 CROCC2H7BZ55 1655 aa13.43□□□□□ -0.26
CCDC40-212ENST00000574799 ERCC6L2Q5T890 1561 aa13.42□□□□□ -0.26
CCDC40-212ENST00000574799 DNMT1P26358 1616 aaKnown RBP13.41□□□□□ -0.26
CCDC40-212ENST00000574799 NBR1Q14596 966 aa13.41□□□□□ -0.26
CCDC40-212ENST00000574799 IRX6P78412 446 aaPredicted RBP13.4□□□□□ -0.26
CCDC40-212ENST00000574799 DEKP35659 375 aaKnown RBP13.39□□□□□ -0.27
CCDC40-212ENST00000574799 FAM50AQ14320 339 aaKnown RBP13.39□□□□□ -0.27
CCDC40-212ENST00000574799 PRG4Q92954 1404 aaPredicted RBP13.38□□□□□ -0.27
CCDC40-212ENST00000574799 RTL5Q5HYW3 569 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-212ENST00000574799 MYT1LQ9UL68 1186 aa13.37□□□□□ -0.27
CCDC40-212ENST00000574799 MIA2Q96PC5 1412 aa13.37□□□□□ -0.27
CCDC40-212ENST00000574799 ANP32CO43423 234 aa13.36□□□□□ -0.27
CCDC40-212ENST00000574799 ABCC10Q5T3U5 1492 aa13.35□□□□□ -0.27
CCDC40-212ENST00000574799 ITSN2Q9NZM3 1697 aa13.35□□□□□ -0.27
CCDC40-212ENST00000574799 CLASP1Q7Z460 1538 aa13.35□□□□□ -0.27
CCDC40-212ENST00000574799 ATP10BO94823 1461 aa13.34□□□□□ -0.27
CCDC40-212ENST00000574799 AKNAQ7Z591 1439 aa13.34□□□□□ -0.27
CCDC40-212ENST00000574799 CDC42BPBQ9Y5S2 1711 aa13.34□□□□□ -0.27
CCDC40-212ENST00000574799 CHMP7Q8WUX9 453 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-212ENST00000574799 ARID3CA6NKF2 412 aa13.33□□□□□ -0.27
CCDC40-212ENST00000574799 JPH4Q96JJ6 628 aa13.33□□□□□ -0.28
CCDC40-212ENST00000574799 ADGBQ8N7X0 1667 aa13.33□□□□□ -0.28
CCDC40-212ENST00000574799 GPATCH8Q9UKJ3 1502 aaKnown RBP13.33□□□□□ -0.28
CCDC40-212ENST00000574799 UACAQ9BZF9 1416 aa13.32□□□□□ -0.28
CCDC40-212ENST00000574799 ABCC5O15440 1437 aa13.32□□□□□ -0.28
CCDC40-212ENST00000574799 DAPK1P53355 1430 aa13.31□□□□□ -0.28
CCDC40-212ENST00000574799 TROQ12816 1431 aaPredicted RBP13.31□□□□□ -0.28
CCDC40-212ENST00000574799 SIN3AQ96ST3 1273 aa13.31□□□□□ -0.28
CCDC40-212ENST00000574799 MSH5O43196 834 aa13.31□□□□□ -0.28
CCDC40-212ENST00000574799 ZNF644Q9H582 1327 aaPredicted RBP13.31□□□□□ -0.28
CCDC40-212ENST00000574799 HIRIP3Q9BW71 556 aaPredicted RBP13.3□□□□□ -0.28
CCDC40-212ENST00000574799 CAMSAP2Q08AD1 1489 aa13.3□□□□□ -0.28
CCDC40-212ENST00000574799 HNRNPUQ00839 825 aaKnown RBP eCLIP13.27□□□□□ -0.29
CCDC40-212ENST00000574799 ANO8Q9HCE9 1232 aaPredicted RBP13.27□□□□□ -0.29
CCDC40-212ENST00000574799 FBLN2P98095 1184 aa13.26□□□□□ -0.29
CCDC40-212ENST00000574799 PREX2Q70Z35 1606 aa13.26□□□□□ -0.29
CCDC40-212ENST00000574799 RTN4Q9NQC3 1192 aaKnown RBP13.26□□□□□ -0.29
CCDC40-212ENST00000574799 TTC37Q6PGP7 1564 aa13.26□□□□□ -0.29
CCDC40-212ENST00000574799 CARMIL2Q6F5E8 1435 aa13.25□□□□□ -0.29
CCDC40-212ENST00000574799 SAMD9LQ8IVG5 1584 aa13.24□□□□□ -0.29
CCDC40-212ENST00000574799 ROCK1Q13464 1354 aa13.24□□□□□ -0.29
CCDC40-212ENST00000574799 ADGRL2O95490 1459 aa13.23□□□□□ -0.29
CCDC40-212ENST00000574799 FANCIQ9NVI1 1328 aa13.22□□□□□ -0.29
CCDC40-212ENST00000574799 ZCCHC11Q5TAX3 1644 aaKnown RBP13.21□□□□□ -0.3
CCDC40-212ENST00000574799 CCDC136Q96JN2 1154 aa13.21□□□□□ -0.3
CCDC40-212ENST00000574799 PZPP20742 1482 aa13.21□□□□□ -0.3
CCDC40-212ENST00000574799 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.2□□□□□ -0.3
CCDC40-212ENST00000574799 MBD5Q9P267 1494 aa13.2□□□□□ -0.3
CCDC40-212ENST00000574799 RRP7BPQ9NSQ0 103 aa13.2□□□□□ -0.3
CCDC40-212ENST00000574799 CHIC2Q9UKJ5 165 aa13.19□□□□□ -0.3
CCDC40-212ENST00000574799 ABCC2Q92887 1545 aa13.19□□□□□ -0.3
CCDC40-212ENST00000574799 NCOA1Q15788 1441 aa13.18□□□□□ -0.3
CCDC40-212ENST00000574799 EIF5BO60841 1220 aaKnown RBP13.18□□□□□ -0.3
CCDC40-212ENST00000574799 NOP58Q9Y2X3 529 aaKnown RBP13.18□□□□□ -0.3
CCDC40-212ENST00000574799 ARHGEF5Q12774 1597 aa13.17□□□□□ -0.3
CCDC40-212ENST00000574799 ANP32AP39687 249 aaKnown RBP13.17□□□□□ -0.3
CCDC40-212ENST00000574799 PPP1R15AO75807 674 aaPredicted RBP13.15□□□□□ -0.3
CCDC40-212ENST00000574799 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.15□□□□□ -0.3
CCDC40-212ENST00000574799 TEX14Q8IWB6 1497 aa13.15□□□□□ -0.3
CCDC40-212ENST00000574799 SHANK2Q9UPX8 1470 aa13.15□□□□□ -0.3
CCDC40-212ENST00000574799 PTPRGP23470 1445 aa13.15□□□□□ -0.3
CCDC40-212ENST00000574799 MYO5CQ9NQX4 1742 aa13.15□□□□□ -0.3
CCDC40-212ENST00000574799 B4GALNT3Q6L9W6 998 aa13.14□□□□□ -0.31
CCDC40-212ENST00000574799 SALL2Q9Y467 1007 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-212ENST00000574799 ARHGEF12Q9NZN5 1544 aa13.12□□□□□ -0.31
CCDC40-212ENST00000574799 CNGB1Q14028 1251 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-212ENST00000574799 KDM5DQ9BY66 1539 aa13.12□□□□□ -0.31
CCDC40-212ENST00000574799 ANKRD30BQ9BXX2 1392 aa13.12□□□□□ -0.31
CCDC40-212ENST00000574799 ZBTB47Q9UFB7 747 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-212ENST00000574799 UHRF1BP1LA0JNW5 1464 aa13.11□□□□□ -0.31
CCDC40-212ENST00000574799 MAST1Q9Y2H9 1570 aa13.11□□□□□ -0.31
CCDC40-212ENST00000574799 TIMELESSQ9UNS1 1208 aa13.1□□□□□ -0.31
CCDC40-212ENST00000574799 PPP4R2Q9NY27 417 aa13.1□□□□□ -0.31
CCDC40-212ENST00000574799 FOXD1Q16676 465 aa13.1□□□□□ -0.31
CCDC40-212ENST00000574799 NPM2Q86SE8 214 aaKnown RBP13.1□□□□□ -0.31
CCDC40-212ENST00000574799 RPRD2Q5VT52 1461 aaKnown RBP13.1□□□□□ -0.31
CCDC40-212ENST00000574799 SYCP2Q9BX26 1530 aa13.09□□□□□ -0.31
CCDC40-212ENST00000574799 CCER2I3L3R5 266 aa13.09□□□□□ -0.31
CCDC40-212ENST00000574799 POLR1AO95602 1720 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-212ENST00000574799 MPHOSPH9Q99550 1183 aa13.08□□□□□ -0.31
CCDC40-212ENST00000574799 CFDP1Q9UEE9 299 aaPredicted RBP13.06□□□□□ -0.32
CCDC40-212ENST00000574799 C9orf84Q5VXU9 1444 aa13.06□□□□□ -0.32
CCDC40-212ENST00000574799 UNC13BO14795 1591 aa13.06□□□□□ -0.32
CCDC40-212ENST00000574799 PLXNC1O60486 1568 aa13.06□□□□□ -0.32
CCDC40-212ENST00000574799 FAM9BQ8IZU0 186 aa13.05□□□□□ -0.32
CCDC40-212ENST00000574799 ERICH6BQ5W0A0 696 aa13.05□□□□□ -0.32
CCDC40-212ENST00000574799 ABCA9Q8IUA7 1624 aa13.02□□□□□ -0.32
CCDC40-212ENST00000574799 IL27Q8NEV9 243 aa13.02□□□□□ -0.32
CCDC40-212ENST00000574799 ABCC1P33527 1531 aa13.02□□□□□ -0.32
CCDC40-212ENST00000574799 PAK3O75914 559 aaPredicted RBP13.01□□□□□ -0.33
CCDC40-212ENST00000574799 CCDC141Q6ZP82 1450 aa13.01□□□□□ -0.33
CCDC40-212ENST00000574799 PLEKHD1A6NEE1 506 aa13.01□□□□□ -0.33
CCDC40-212ENST00000574799 ANKRD50Q9ULJ7 1429 aa13.01□□□□□ -0.33
CCDC40-212ENST00000574799 BCORL1Q5H9F3 1711 aa13.01□□□□□ -0.33
CCDC40-212ENST00000574799 MAGI2Q86UL8 1455 aa13□□□□□ -0.33
CCDC40-212ENST00000574799 SPATA31E1Q6ZUB1 1445 aa13□□□□□ -0.33
CCDC40-212ENST00000574799 IQGAP3Q86VI3 1631 aa12.99□□□□□ -0.33
CCDC40-212ENST00000574799 TONSLQ96HA7 1378 aa12.99□□□□□ -0.33
CCDC40-212ENST00000574799 HNRNPMP52272 730 aaKnown RBP eCLIP12.99□□□□□ -0.33
CCDC40-212ENST00000574799 LAS1LQ9Y4W2 734 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms