RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 MTUS2Q5JR59 1369 aa22.97■■□□□ 1.27
COMMD4-225ENST00000569245 POGZQ7Z3K3 1410 aa22.93■■□□□ 1.26
COMMD4-225ENST00000569245 MYT1LQ9UL68 1186 aa22.92■■□□□ 1.26
COMMD4-225ENST00000569245 ZNF777Q9ULD5 760 aaPredicted RBP22.92■■□□□ 1.26
COMMD4-225ENST00000569245 RICTORQ6R327 1708 aa22.91■■□□□ 1.26
COMMD4-225ENST00000569245 AFAP1Q8N556 730 aa22.9■■□□□ 1.26
COMMD4-225ENST00000569245 CCNB3Q8WWL7 1395 aa22.89■■□□□ 1.25
COMMD4-225ENST00000569245 MAGI2Q86UL8 1455 aa22.87■■□□□ 1.25
COMMD4-225ENST00000569245 CFDP1Q9UEE9 299 aaPredicted RBP22.87■■□□□ 1.25
COMMD4-225ENST00000569245 VPS8Q8N3P4 1428 aa22.87■■□□□ 1.25
COMMD4-225ENST00000569245 ZMYM4Q5VZL5 1548 aa22.87■■□□□ 1.25
COMMD4-225ENST00000569245 YEATS2Q9ULM3 1422 aa22.86■■□□□ 1.25
COMMD4-225ENST00000569245 ZFYVE16Q7Z3T8 1539 aa22.86■■□□□ 1.25
COMMD4-225ENST00000569245 ARHGEF40Q8TER5 1519 aa22.86■■□□□ 1.25
COMMD4-225ENST00000569245 ZNF518AQ6AHZ1 1483 aa22.85■■□□□ 1.25
COMMD4-225ENST00000569245 GPATCH8Q9UKJ3 1502 aaKnown RBP22.85■■□□□ 1.25
COMMD4-225ENST00000569245 PREX2Q70Z35 1606 aa22.85■■□□□ 1.25
COMMD4-225ENST00000569245 CDC42BPBQ9Y5S2 1711 aa22.84■■□□□ 1.25
COMMD4-225ENST00000569245 EHBP1L1Q8N3D4 1523 aa22.82■■□□□ 1.24
COMMD4-225ENST00000569245 CDC42BPAQ5VT25 1732 aa22.79■■□□□ 1.24
COMMD4-225ENST00000569245 HNRNPMP52272 730 aaKnown RBP eCLIP22.79■■□□□ 1.24
COMMD4-225ENST00000569245 TRAPPC8Q9Y2L5 1435 aa22.79■■□□□ 1.24
COMMD4-225ENST00000569245 ABCC1P33527 1531 aa22.78■■□□□ 1.24
COMMD4-225ENST00000569245 ARHGEF12Q9NZN5 1544 aa22.78■■□□□ 1.24
COMMD4-225ENST00000569245 MLECQ14165 292 aa22.78■■□□□ 1.24
COMMD4-225ENST00000569245 ATP10AO60312 1499 aa22.77■■□□□ 1.24
COMMD4-225ENST00000569245 APLP2Q06481 763 aa22.76■■□□□ 1.23
COMMD4-225ENST00000569245 TIAM1Q13009 1591 aa22.75■■□□□ 1.23
COMMD4-225ENST00000569245 KDM5CP41229 1560 aa22.74■■□□□ 1.23
COMMD4-225ENST00000569245 C9orf84Q5VXU9 1444 aa22.74■■□□□ 1.23
COMMD4-225ENST00000569245 SAMD9LQ8IVG5 1584 aa22.72■■□□□ 1.23
COMMD4-225ENST00000569245 ZNF644Q9H582 1327 aaPredicted RBP22.72■■□□□ 1.23
COMMD4-225ENST00000569245 NCOA2Q15596 1464 aa22.72■■□□□ 1.23
COMMD4-225ENST00000569245 PLEKHH2Q8IVE3 1493 aa22.72■■□□□ 1.23
COMMD4-225ENST00000569245 MLH3Q9UHC1 1453 aa22.72■■□□□ 1.23
COMMD4-225ENST00000569245 BCORL1Q5H9F3 1711 aa22.71■■□□□ 1.23
COMMD4-225ENST00000569245 SPAG9O60271 1321 aaKnown RBP22.71■■□□□ 1.23
COMMD4-225ENST00000569245 KIAA1107Q9UPP5 1409 aa22.71■■□□□ 1.23
COMMD4-225ENST00000569245 SYCP2Q9BX26 1530 aa22.71■■□□□ 1.23
COMMD4-225ENST00000569245 ADAMTSL3P82987 1691 aa22.71■■□□□ 1.23
COMMD4-225ENST00000569245 KANK4Q5T7N3 995 aaPredicted RBP22.7■■□□□ 1.22
COMMD4-225ENST00000569245 LRRC9Q6ZRR7 1453 aa22.7■■□□□ 1.22
COMMD4-225ENST00000569245 HECW2Q9P2P5 1572 aa22.7■■□□□ 1.22
COMMD4-225ENST00000569245 ITSN2Q9NZM3 1697 aa22.7■■□□□ 1.22
COMMD4-225ENST00000569245 PTPRMP28827 1452 aa22.69■■□□□ 1.22
COMMD4-225ENST00000569245 PLPPR3Q6T4P5 718 aa22.69■■□□□ 1.22
COMMD4-225ENST00000569245 SUPT6HQ7KZ85 1726 aaKnown RBP22.68■■□□□ 1.22
COMMD4-225ENST00000569245 MADDQ8WXG6 1647 aa22.66■■□□□ 1.22
COMMD4-225ENST00000569245 MAP3K1Q13233 1512 aa22.65■■□□□ 1.22
COMMD4-225ENST00000569245 DIP2CQ9Y2E4 1556 aa22.63■■□□□ 1.21
COMMD4-225ENST00000569245 SIGLEC1Q9BZZ2 1709 aa22.63■■□□□ 1.21
COMMD4-225ENST00000569245 ABCA6Q8N139 1617 aa22.6■■□□□ 1.21
COMMD4-225ENST00000569245 ESF1Q9H501 851 aaKnown RBP22.59■■□□□ 1.21
COMMD4-225ENST00000569245 RIMS1Q86UR5 1692 aaKnown RBP22.58■■□□□ 1.21
COMMD4-225ENST00000569245 KIDINS220Q9ULH0 1771 aa22.58■■□□□ 1.2
COMMD4-225ENST00000569245 MBD5Q9P267 1494 aa22.57■■□□□ 1.2
COMMD4-225ENST00000569245 REREQ9P2R6 1566 aa22.56■■□□□ 1.2
COMMD4-225ENST00000569245 CAMSAP2Q08AD1 1489 aa22.56■■□□□ 1.2
COMMD4-225ENST00000569245 RSPH4AQ5TD94 716 aa22.56■■□□□ 1.2
COMMD4-225ENST00000569245 ATP7AQ04656 1500 aa22.56■■□□□ 1.2
COMMD4-225ENST00000569245 TSPY4P0CV99 314 aa22.53■■□□□ 1.2
COMMD4-225ENST00000569245 TSPY10P0CW01 314 aa22.53■■□□□ 1.2
COMMD4-225ENST00000569245 AGLP35573 1532 aa22.52■■□□□ 1.2
COMMD4-225ENST00000569245 CCDC141Q6ZP82 1450 aa22.52■■□□□ 1.2
COMMD4-225ENST00000569245 MYOM3Q5VTT5 1437 aa22.51■■□□□ 1.19
COMMD4-225ENST00000569245 CEBPAP49715 358 aaPredicted RBP22.51■■□□□ 1.19
COMMD4-225ENST00000569245 FER1L4A9Z1Z3 1794 aa22.5■■□□□ 1.19
COMMD4-225ENST00000569245 A2MP01023 1474 aa22.5■■□□□ 1.19
COMMD4-225ENST00000569245 INO80Q9ULG1 1556 aaPredicted RBP22.5■■□□□ 1.19
COMMD4-225ENST00000569245 RTEL1-TNFRSF6BF6WH68 1400 aa22.48■■□□□ 1.19
COMMD4-225ENST00000569245 MIA2Q96PC5 1412 aa22.48■■□□□ 1.19
COMMD4-225ENST00000569245 GGT6Q6P531 493 aa22.47■■□□□ 1.19
COMMD4-225ENST00000569245 DHX29Q7Z478 1369 aaKnown RBP22.42■■□□□ 1.18
COMMD4-225ENST00000569245 ARHGEF5Q12774 1597 aa22.42■■□□□ 1.18
COMMD4-225ENST00000569245 CNTLNQ9NXG0 1405 aa22.4■■□□□ 1.18
COMMD4-225ENST00000569245 LMTK3Q96Q04 1460 aa22.4■■□□□ 1.18
COMMD4-225ENST00000569245 PLXNC1O60486 1568 aa22.39■■□□□ 1.18
COMMD4-225ENST00000569245 KIF3BO15066 747 aa22.39■■□□□ 1.17
COMMD4-225ENST00000569245 HSPA2P54652 639 aa22.39■■□□□ 1.17
COMMD4-225ENST00000569245 ADGBQ8N7X0 1667 aa22.39■■□□□ 1.17
COMMD4-225ENST00000569245 PPP6R1Q9UPN7 881 aa22.36■■□□□ 1.17
COMMD4-225ENST00000569245 FGD6Q6ZV73 1430 aa22.36■■□□□ 1.17
COMMD4-225ENST00000569245 ZMYM3Q14202 1370 aa22.35■■□□□ 1.17
COMMD4-225ENST00000569245 PTPN23Q9H3S7 1636 aa22.33■■□□□ 1.17
COMMD4-225ENST00000569245 FAM50AQ14320 339 aaKnown RBP22.32■■□□□ 1.16
COMMD4-225ENST00000569245 PPARGC1BQ86YN6 1023 aaKnown RBP22.31■■□□□ 1.16
COMMD4-225ENST00000569245 ABCC5O15440 1437 aa22.3■■□□□ 1.16
COMMD4-225ENST00000569245 UHRF1BP1Q6BDS2 1440 aa22.3■■□□□ 1.16
COMMD4-225ENST00000569245 C3P01024 1663 aa22.3■■□□□ 1.16
COMMD4-225ENST00000569245 RRP7BPQ9NSQ0 103 aa22.29■■□□□ 1.16
COMMD4-225ENST00000569245 MAST1Q9Y2H9 1570 aa22.29■■□□□ 1.16
COMMD4-225ENST00000569245 WASHC2CQ9Y4E1 1318 aa22.29■■□□□ 1.16
COMMD4-225ENST00000569245 CHIC2Q9UKJ5 165 aa22.28■■□□□ 1.16
COMMD4-225ENST00000569245 TCOF1Q13428 1488 aaKnown RBP22.28■■□□□ 1.16
COMMD4-225ENST00000569245 DAPK1P53355 1430 aa22.26■■□□□ 1.15
COMMD4-225ENST00000569245 CLTCQ00610 1675 aaKnown RBP22.26■■□□□ 1.15
COMMD4-225ENST00000569245 PREX1Q8TCU6 1659 aa22.25■■□□□ 1.15
COMMD4-225ENST00000569245 KIF15Q9NS87 1388 aa22.24■■□□□ 1.15
COMMD4-225ENST00000569245 NPATQ14207 1427 aa22.23■■□□□ 1.15
COMMD4-225ENST00000569245 SHANK2Q9UPX8 1470 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms