RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 NISCHQ9Y2I1 1504 aa35.16■■■■□ 3.22
COMMD4-225ENST00000569245 CCDC180Q9P1Z9 1646 aa31.25■■■□□ 2.59
COMMD4-225ENST00000569245 ABCC9O60706 1549 aa30.96■■■□□ 2.55
COMMD4-225ENST00000569245 DCAF8L2P0C7V8 631 aa29.72■■■□□ 2.35
COMMD4-225ENST00000569245 RB1CC1Q8TDY2 1594 aa29.61■■■□□ 2.33
COMMD4-225ENST00000569245 NACADO15069 1562 aa29.52■■■□□ 2.32
COMMD4-225ENST00000569245 MYO15BQ96JP2 1530 aa29.22■■■□□ 2.27
COMMD4-225ENST00000569245 ZCCHC6Q5VYS8 1495 aaKnown RBP29.22■■■□□ 2.27
COMMD4-225ENST00000569245 DCAF1Q9Y4B6 1507 aa29.03■■■□□ 2.24
COMMD4-225ENST00000569245 PABPN1Q86U42 306 aaKnown RBP eCLIP28.98■■■□□ 2.23
COMMD4-225ENST00000569245 UNC13AQ9UPW8 1703 aa28.8■■■□□ 2.2
COMMD4-225ENST00000569245 BICRAQ9NZM4 1560 aa28.67■■■□□ 2.18
COMMD4-225ENST00000569245 DNAJC5BQ9UF47 199 aa28.63■■■□□ 2.17
COMMD4-225ENST00000569245 SCRIBQ14160 1630 aa28.61■■■□□ 2.17
COMMD4-225ENST00000569245 SHROOM4Q9ULL8 1493 aa28.35■■■□□ 2.13
COMMD4-225ENST00000569245 EIF4G1Q04637 1599 aaKnown RBP27.98■■■□□ 2.07
COMMD4-225ENST00000569245 CC2D2AQ9P2K1 1620 aa27.92■■■□□ 2.06
COMMD4-225ENST00000569245 CECR2Q9BXF3 1484 aa27.83■■■□□ 2.05
COMMD4-225ENST00000569245 SMARCA4P51532 1647 aa27.3■■□□□ 1.96
COMMD4-225ENST00000569245 BAZ1AQ9NRL2 1556 aaPredicted RBP27.26■■□□□ 1.96
COMMD4-225ENST00000569245 NCAPD3P42695 1498 aa27.26■■□□□ 1.95
COMMD4-225ENST00000569245 ATAD2BQ9ULI0 1458 aa27.25■■□□□ 1.95
COMMD4-225ENST00000569245 SMARCA2P51531 1590 aa27.19■■□□□ 1.94
COMMD4-225ENST00000569245 MROH2BQ7Z745 1585 aa27.11■■□□□ 1.93
COMMD4-225ENST00000569245 HMGXB3Q12766 1538 aa27.06■■□□□ 1.92
COMMD4-225ENST00000569245 BAZ1BQ9UIG0 1483 aaKnown RBP27.05■■□□□ 1.92
COMMD4-225ENST00000569245 PEG3Q9GZU2 1588 aa26.99■■□□□ 1.91
COMMD4-225ENST00000569245 WIZO95785 1651 aa26.78■■□□□ 1.88
COMMD4-225ENST00000569245 RSF1Q96T23 1441 aaPredicted RBP26.75■■□□□ 1.87
COMMD4-225ENST00000569245 ERCC6Q03468 1493 aa26.74■■□□□ 1.87
COMMD4-225ENST00000569245 NESP48681 1621 aa26.7■■□□□ 1.86
COMMD4-225ENST00000569245 LAMC3Q9Y6N6 1575 aa26.54■■□□□ 1.84
COMMD4-225ENST00000569245 CADPSQ9ULU8 1353 aa26.51■■□□□ 1.83
COMMD4-225ENST00000569245 TOP2AP11388 1531 aaKnown RBP26.49■■□□□ 1.83
COMMD4-225ENST00000569245 PDS5BQ9NTI5 1447 aa26.48■■□□□ 1.83
COMMD4-225ENST00000569245 CUX2O14529 1486 aa26.44■■□□□ 1.82
COMMD4-225ENST00000569245 KIF21AQ7Z4S6 1674 aa26.28■■□□□ 1.8
COMMD4-225ENST00000569245 CFTRP13569 1480 aa26.26■■□□□ 1.79
COMMD4-225ENST00000569245 THOC2Q8NI27 1593 aaKnown RBP26.24■■□□□ 1.79
COMMD4-225ENST00000569245 CCDC88BA6NC98 1476 aa26.23■■□□□ 1.79
COMMD4-225ENST00000569245 FANCD2Q9BXW9 1451 aa26.19■■□□□ 1.78
COMMD4-225ENST00000569245 MRC2Q9UBG0 1479 aa26.17■■□□□ 1.78
COMMD4-225ENST00000569245 CEP164Q9UPV0 1460 aa26.17■■□□□ 1.78
COMMD4-225ENST00000569245 SUPT5HO00267 1087 aaKnown RBP26.08■■□□□ 1.77
COMMD4-225ENST00000569245 WDR62O43379 1518 aa26.04■■□□□ 1.76
COMMD4-225ENST00000569245 DNAJC5Q9H3Z4 198 aa25.97■■□□□ 1.75
COMMD4-225ENST00000569245 URB2Q14146 1524 aaKnown RBP25.91■■□□□ 1.74
COMMD4-225ENST00000569245 PRDM2Q13029 1718 aa25.88■■□□□ 1.73
COMMD4-225ENST00000569245 ABCC8Q09428 1581 aa25.72■■□□□ 1.71
COMMD4-225ENST00000569245 TOPBP1Q92547 1522 aa25.72■■□□□ 1.71
COMMD4-225ENST00000569245 DNMBPQ6XZF7 1577 aa25.65■■□□□ 1.7
COMMD4-225ENST00000569245 IFT140Q96RY7 1462 aa25.63■■□□□ 1.69
COMMD4-225ENST00000569245 ZNF608Q9ULD9 1512 aaPredicted RBP25.53■■□□□ 1.68
COMMD4-225ENST00000569245 POLA1P09884 1462 aaPredicted RBP25.49■■□□□ 1.67
COMMD4-225ENST00000569245 SOGA1O94964 1423 aa25.45■■□□□ 1.66
COMMD4-225ENST00000569245 CUX1P39880 1505 aa25.44■■□□□ 1.66
COMMD4-225ENST00000569245 RAD54L2Q9Y4B4 1467 aa25.43■■□□□ 1.66
COMMD4-225ENST00000569245 OSCARQ8IYS5 282 aa25.43■■□□□ 1.66
COMMD4-225ENST00000569245 AQRO60306 1485 aaKnown RBP eCLIP25.4■■□□□ 1.66
COMMD4-225ENST00000569245 FGD5Q6ZNL6 1462 aa25.4■■□□□ 1.66
COMMD4-225ENST00000569245 TARBP1Q13395 1621 aaKnown RBP25.4■■□□□ 1.66
COMMD4-225ENST00000569245 EIF4G3O43432 1585 aaKnown RBP25.36■■□□□ 1.65
COMMD4-225ENST00000569245 TDRD9Q8NDG6 1382 aaKnown RBP25.35■■□□□ 1.65
COMMD4-225ENST00000569245 FBLN2P98095 1184 aa25.27■■□□□ 1.64
COMMD4-225ENST00000569245 WRNQ14191 1432 aaPredicted RBP eCLIP25.25■■□□□ 1.63
COMMD4-225ENST00000569245 WDR97A6NE52 1622 aa25.16■■□□□ 1.62
COMMD4-225ENST00000569245 TOP2BQ02880 1626 aa25.14■■□□□ 1.61
COMMD4-225ENST00000569245 GRIN2BQ13224 1484 aa25.14■■□□□ 1.61
COMMD4-225ENST00000569245 SNAPC4Q5SXM2 1469 aa25.14■■□□□ 1.61
COMMD4-225ENST00000569245 ABCA10Q8WWZ4 1543 aa25.13■■□□□ 1.61
COMMD4-225ENST00000569245 SYNJ1O43426 1573 aa25.13■■□□□ 1.61
COMMD4-225ENST00000569245 CHMP7Q8WUX9 453 aaPredicted RBP25.12■■□□□ 1.61
COMMD4-225ENST00000569245 TRIM41Q8WV44 630 aa25.12■■□□□ 1.61
COMMD4-225ENST00000569245 GAPVD1Q14C86 1478 aa25.12■■□□□ 1.61
COMMD4-225ENST00000569245 BIVM-ERCC5R4GMW8 1640 aa25.09■■□□□ 1.61
COMMD4-225ENST00000569245 MAGI1Q96QZ7 1491 aaPredicted RBP25.07■■□□□ 1.6
COMMD4-225ENST00000569245 CHD1O14646 1710 aa25.05■■□□□ 1.6
COMMD4-225ENST00000569245 SYNJ2O15056 1496 aa24.99■■□□□ 1.59
COMMD4-225ENST00000569245 ABCA5Q8WWZ7 1642 aa24.99■■□□□ 1.59
COMMD4-225ENST00000569245 PBRM1Q86U86 1689 aa24.96■■□□□ 1.59
COMMD4-225ENST00000569245 ARHGEF11O15085 1522 aa24.91■■□□□ 1.58
COMMD4-225ENST00000569245 RIMBP3CA6NJZ7 1639 aa24.9■■□□□ 1.58
COMMD4-225ENST00000569245 RIMBP3BA6NNM3 1639 aa24.9■■□□□ 1.58
COMMD4-225ENST00000569245 RIMBP3Q9UFD9 1639 aa24.9■■□□□ 1.58
COMMD4-225ENST00000569245 CYB5RLQ6IPT4 315 aa24.83■■□□□ 1.57
COMMD4-225ENST00000569245 FHAD1B1AJZ9 1412 aa24.82■■□□□ 1.56
COMMD4-225ENST00000569245 ERICH3Q5RHP9 1530 aa24.81■■□□□ 1.56
COMMD4-225ENST00000569245 GRIN2AQ12879 1464 aa24.8■■□□□ 1.56
COMMD4-225ENST00000569245 CLASP1Q7Z460 1538 aa24.8■■□□□ 1.56
COMMD4-225ENST00000569245 ADAMTS12P58397 1594 aa24.8■■□□□ 1.56
COMMD4-225ENST00000569245 KIF27Q86VH2 1401 aa24.76■■□□□ 1.55
COMMD4-225ENST00000569245 ARAP1Q96P48 1450 aa24.69■■□□□ 1.54
COMMD4-225ENST00000569245 IGF1RP08069 1367 aa24.68■■□□□ 1.54
COMMD4-225ENST00000569245 NUP160Q12769 1436 aa24.68■■□□□ 1.54
COMMD4-225ENST00000569245 CEP170Q5SW79 1584 aa24.65■■□□□ 1.54
COMMD4-225ENST00000569245 CARMIL1Q5VZK9 1371 aa24.54■■□□□ 1.52
COMMD4-225ENST00000569245 JPH4Q96JJ6 628 aa24.53■■□□□ 1.52
COMMD4-225ENST00000569245 CUL7Q14999 1698 aa24.52■■□□□ 1.52
COMMD4-225ENST00000569245 ERCC6L2Q5T890 1561 aa24.48■■□□□ 1.51
COMMD4-225ENST00000569245 PRG4Q92954 1404 aaPredicted RBP24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms