RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-208ENST00000564703 CFAP74Q9C0B2 1584 aa24.89■■□□□ 1.58
RAB40C-208ENST00000564703 ARAP3Q8WWN8 1544 aa24.89■■□□□ 1.57
RAB40C-208ENST00000564703 COL17A1Q9UMD9 1497 aaPredicted RBP24.89■■□□□ 1.57
RAB40C-208ENST00000564703 RAPGEF3O95398 923 aa24.86■■□□□ 1.57
RAB40C-208ENST00000564703 SUPT6HQ7KZ85 1726 aaKnown RBP24.86■■□□□ 1.57
RAB40C-208ENST00000564703 GPATCH8Q9UKJ3 1502 aaKnown RBP24.84■■□□□ 1.57
RAB40C-208ENST00000564703 SCAPERQ9BY12 1400 aa24.83■■□□□ 1.57
RAB40C-208ENST00000564703 DENND4BO75064 1496 aaPredicted RBP24.83■■□□□ 1.56
RAB40C-208ENST00000564703 NCOA2Q15596 1464 aa24.83■■□□□ 1.56
RAB40C-208ENST00000564703 ADGRL1O94910 1474 aa24.82■■□□□ 1.56
RAB40C-208ENST00000564703 CDC42BPBQ9Y5S2 1711 aa24.81■■□□□ 1.56
RAB40C-208ENST00000564703 CDC42BPAQ5VT25 1732 aa24.81■■□□□ 1.56
RAB40C-208ENST00000564703 PREX2Q70Z35 1606 aa24.8■■□□□ 1.56
RAB40C-208ENST00000564703 MYT1LQ9UL68 1186 aa24.77■■□□□ 1.56
RAB40C-208ENST00000564703 ITSN2Q9NZM3 1697 aa24.73■■□□□ 1.55
RAB40C-208ENST00000564703 HNRNPMP52272 730 aaKnown RBP eCLIP24.73■■□□□ 1.55
RAB40C-208ENST00000564703 AFAP1Q8N556 730 aa24.72■■□□□ 1.55
RAB40C-208ENST00000564703 PLEKHH2Q8IVE3 1493 aa24.71■■□□□ 1.55
RAB40C-208ENST00000564703 ZNF644Q9H582 1327 aaPredicted RBP24.69■■□□□ 1.54
RAB40C-208ENST00000564703 PPARGC1BQ86YN6 1023 aaKnown RBP24.69■■□□□ 1.54
RAB40C-208ENST00000564703 POGZQ7Z3K3 1410 aa24.68■■□□□ 1.54
RAB40C-208ENST00000564703 ZNF518AQ6AHZ1 1483 aa24.67■■□□□ 1.54
RAB40C-208ENST00000564703 MYOM3Q5VTT5 1437 aa24.67■■□□□ 1.54
RAB40C-208ENST00000564703 KIAA1107Q9UPP5 1409 aa24.67■■□□□ 1.54
RAB40C-208ENST00000564703 RSPH4AQ5TD94 716 aa24.66■■□□□ 1.54
RAB40C-208ENST00000564703 RICTORQ6R327 1708 aa24.66■■□□□ 1.54
RAB40C-208ENST00000564703 SAMD9LQ8IVG5 1584 aa24.65■■□□□ 1.54
RAB40C-208ENST00000564703 MIA2Q96PC5 1412 aa24.64■■□□□ 1.54
RAB40C-208ENST00000564703 ABCC1P33527 1531 aa24.64■■□□□ 1.53
RAB40C-208ENST00000564703 TRAPPC8Q9Y2L5 1435 aa24.62■■□□□ 1.53
RAB40C-208ENST00000564703 ARHGEF12Q9NZN5 1544 aa24.62■■□□□ 1.53
RAB40C-208ENST00000564703 MAGI2Q86UL8 1455 aa24.62■■□□□ 1.53
RAB40C-208ENST00000564703 FRMPD1Q5SYB0 1578 aa24.62■■□□□ 1.53
RAB40C-208ENST00000564703 SPAG9O60271 1321 aaKnown RBP24.61■■□□□ 1.53
RAB40C-208ENST00000564703 SYCP2Q9BX26 1530 aa24.6■■□□□ 1.53
RAB40C-208ENST00000564703 TSPY4P0CV99 314 aa24.59■■□□□ 1.53
RAB40C-208ENST00000564703 TSPY10P0CW01 314 aa24.59■■□□□ 1.53
RAB40C-208ENST00000564703 ARID4BQ4LE39 1312 aaPredicted RBP24.58■■□□□ 1.52
RAB40C-208ENST00000564703 CAMSAP2Q08AD1 1489 aa24.58■■□□□ 1.52
RAB40C-208ENST00000564703 ZMYM4Q5VZL5 1548 aa24.57■■□□□ 1.52
RAB40C-208ENST00000564703 ZFYVE16Q7Z3T8 1539 aa24.56■■□□□ 1.52
RAB40C-208ENST00000564703 MLH3Q9UHC1 1453 aa24.53■■□□□ 1.52
RAB40C-208ENST00000564703 KDM5CP41229 1560 aa24.53■■□□□ 1.52
RAB40C-208ENST00000564703 FGD6Q6ZV73 1430 aa24.52■■□□□ 1.52
RAB40C-208ENST00000564703 YEATS2Q9ULM3 1422 aa24.52■■□□□ 1.52
RAB40C-208ENST00000564703 MBD5Q9P267 1494 aa24.52■■□□□ 1.52
RAB40C-208ENST00000564703 FAM50AQ14320 339 aaKnown RBP24.52■■□□□ 1.52
RAB40C-208ENST00000564703 ATP10AO60312 1499 aa24.51■■□□□ 1.51
RAB40C-208ENST00000564703 HECW2Q9P2P5 1572 aa24.49■■□□□ 1.51
RAB40C-208ENST00000564703 CCDC141Q6ZP82 1450 aa24.48■■□□□ 1.51
RAB40C-208ENST00000564703 PTPN23Q9H3S7 1636 aa24.48■■□□□ 1.51
RAB40C-208ENST00000564703 ARHGEF40Q8TER5 1519 aa24.47■■□□□ 1.51
RAB40C-208ENST00000564703 ARHGEF5Q12774 1597 aa24.44■■□□□ 1.5
RAB40C-208ENST00000564703 RTEL1-TNFRSF6BF6WH68 1400 aa24.44■■□□□ 1.5
RAB40C-208ENST00000564703 C9orf84Q5VXU9 1444 aa24.44■■□□□ 1.5
RAB40C-208ENST00000564703 ATP7AQ04656 1500 aa24.42■■□□□ 1.5
RAB40C-208ENST00000564703 TCOF1Q13428 1488 aaKnown RBP24.42■■□□□ 1.5
RAB40C-208ENST00000564703 KIDINS220Q9ULH0 1771 aa24.42■■□□□ 1.5
RAB40C-208ENST00000564703 AEBP2Q6ZN18 517 aaPredicted RBP24.41■■□□□ 1.5
RAB40C-208ENST00000564703 KDM4FA0A1W2PPD8 638 aa24.4■■□□□ 1.5
RAB40C-208ENST00000564703 MLECQ14165 292 aa24.4■■□□□ 1.5
RAB40C-208ENST00000564703 DIP2CQ9Y2E4 1556 aa24.38■■□□□ 1.49
RAB40C-208ENST00000564703 ABCA6Q8N139 1617 aa24.36■■□□□ 1.49
RAB40C-208ENST00000564703 ABCC5O15440 1437 aa24.35■■□□□ 1.49
RAB40C-208ENST00000564703 INO80Q9ULG1 1556 aaPredicted RBP24.35■■□□□ 1.49
RAB40C-208ENST00000564703 CHIC2Q9UKJ5 165 aa24.35■■□□□ 1.49
RAB40C-208ENST00000564703 DAPK1P53355 1430 aa24.35■■□□□ 1.49
RAB40C-208ENST00000564703 A2MP01023 1474 aa24.33■■□□□ 1.49
RAB40C-208ENST00000564703 ESF1Q9H501 851 aaKnown RBP24.33■■□□□ 1.49
RAB40C-208ENST00000564703 ITGAEP38570 1179 aa24.32■■□□□ 1.48
RAB40C-208ENST00000564703 DHX29Q7Z478 1369 aaKnown RBP24.31■■□□□ 1.48
RAB40C-208ENST00000564703 RRP7BPQ9NSQ0 103 aa24.31■■□□□ 1.48
RAB40C-208ENST00000564703 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.3■■□□□ 1.48
RAB40C-208ENST00000564703 REREQ9P2R6 1566 aa24.3■■□□□ 1.48
RAB40C-208ENST00000564703 DNMT1P26358 1616 aaKnown RBP24.3■■□□□ 1.48
RAB40C-208ENST00000564703 ADGBQ8N7X0 1667 aa24.29■■□□□ 1.48
RAB40C-208ENST00000564703 MAST1Q9Y2H9 1570 aa24.29■■□□□ 1.48
RAB40C-208ENST00000564703 ANKRD30AQ9BXX3 1397 aa24.29■■□□□ 1.48
RAB40C-208ENST00000564703 BCORL1Q5H9F3 1711 aa24.27■■□□□ 1.48
RAB40C-208ENST00000564703 SHANK2Q9UPX8 1470 aa24.27■■□□□ 1.48
RAB40C-208ENST00000564703 AGLP35573 1532 aa24.27■■□□□ 1.48
RAB40C-208ENST00000564703 KIF3BO15066 747 aa24.27■■□□□ 1.48
RAB40C-208ENST00000564703 GGT6Q6P531 493 aa24.27■■□□□ 1.48
RAB40C-208ENST00000564703 RRBP1Q9P2E9 1410 aaKnown RBP24.25■■□□□ 1.47
RAB40C-208ENST00000564703 SIGLEC1Q9BZZ2 1709 aa24.24■■□□□ 1.47
RAB40C-208ENST00000564703 CROCC2H7BZ55 1655 aa24.22■■□□□ 1.47
RAB40C-208ENST00000564703 KIF15Q9NS87 1388 aa24.22■■□□□ 1.47
RAB40C-208ENST00000564703 ADAMTSL3P82987 1691 aa24.21■■□□□ 1.47
RAB40C-208ENST00000564703 PPP6R1Q9UPN7 881 aa24.21■■□□□ 1.47
RAB40C-208ENST00000564703 NCOA1Q15788 1441 aa24.19■■□□□ 1.46
RAB40C-208ENST00000564703 PLXNC1O60486 1568 aa24.19■■□□□ 1.46
RAB40C-208ENST00000564703 PLPPR3Q6T4P5 718 aa24.18■■□□□ 1.46
RAB40C-208ENST00000564703 DUOX2Q9NRD8 1548 aa24.18■■□□□ 1.46
RAB40C-208ENST00000564703 MADDQ8WXG6 1647 aa24.15■■□□□ 1.46
RAB40C-208ENST00000564703 PTPRKQ15262 1439 aa24.14■■□□□ 1.45
RAB40C-208ENST00000564703 ADGRL2O95490 1459 aa24.13■■□□□ 1.45
RAB40C-208ENST00000564703 ROCK1Q13464 1354 aa24.13■■□□□ 1.45
RAB40C-208ENST00000564703 PTPRMP28827 1452 aa24.13■■□□□ 1.45
RAB40C-208ENST00000564703 WASHC2CQ9Y4E1 1318 aa24.12■■□□□ 1.45
RAB40C-208ENST00000564703 FER1L4A9Z1Z3 1794 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms