RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 HS3ST6Q96QI5 342 aa11.01□□□□□ -0.65
LINC00560-201ENST00000564593 KRTAP3-3Q9BYR6 98 aa11.01□□□□□ -0.65
LINC00560-201ENST00000564593 KRTAP3-2Q9BYR7 98 aa11.01□□□□□ -0.65
LINC00560-201ENST00000564593 POTEB3A0JP26 581 aa10.99□□□□□ -0.65
LINC00560-201ENST00000564593 PSEN1P49768 467 aa10.99□□□□□ -0.65
LINC00560-201ENST00000564593 PDAP1Q13442 181 aaKnown RBP10.99□□□□□ -0.65
LINC00560-201ENST00000564593 POTEBQ6S5H4 581 aa10.99□□□□□ -0.65
LINC00560-201ENST00000564593 ILDR1Q86SU0 546 aaPredicted RBP10.99□□□□□ -0.65
LINC00560-201ENST00000564593 FAM205CA6NFA0 338 aa10.98□□□□□ -0.65
LINC00560-201ENST00000564593 BCANQ96GW7 911 aa10.97□□□□□ -0.65
LINC00560-201ENST00000564593 RYDENQ9NUL5 291 aaKnown RBP10.96□□□□□ -0.65
LINC00560-201ENST00000564593 DPY19L2Q6NUT2 758 aa10.9□□□□□ -0.66
LINC00560-201ENST00000564593 HOXB3P14651 431 aaPredicted RBP10.89□□□□□ -0.67
LINC00560-201ENST00000564593 BOLA1Q9Y3E2 137 aa10.88□□□□□ -0.67
LINC00560-201ENST00000564593 G3V3G9 751 aa10.87□□□□□ -0.67
LINC00560-201ENST00000564593 CABP2Q9NPB3 220 aa10.85□□□□□ -0.67
LINC00560-201ENST00000564593 HOXB1P14653 301 aaPredicted RBP10.84□□□□□ -0.67
LINC00560-201ENST00000564593 ZNF710Q8N1W2 664 aa10.82□□□□□ -0.68
LINC00560-201ENST00000564593 DOK7Q18PE1 504 aa10.81□□□□□ -0.68
LINC00560-201ENST00000564593 MFRPQ9BY79 579 aa10.81□□□□□ -0.68
LINC00560-201ENST00000564593 EFCAB3Q8N7B9 438 aa10.79□□□□□ -0.68
LINC00560-201ENST00000564593 ERBB3P21860 1342 aa10.78□□□□□ -0.68
LINC00560-201ENST00000564593 SOX12O15370 315 aa10.76□□□□□ -0.69
LINC00560-201ENST00000564593 NLRP6P59044 892 aa10.75□□□□□ -0.69
LINC00560-201ENST00000564593 RIMBP2O15034 1052 aa10.74□□□□□ -0.69
LINC00560-201ENST00000564593 RNF166Q96A37 237 aaPredicted RBP10.73□□□□□ -0.69
LINC00560-201ENST00000564593 PHF8Q9UPP1 1060 aa10.73□□□□□ -0.69
LINC00560-201ENST00000564593 NBR1Q14596 966 aa10.73□□□□□ -0.69
LINC00560-201ENST00000564593 FBXO22Q8NEZ5 403 aa10.72□□□□□ -0.69
LINC00560-201ENST00000564593 VARS2Q5ST30 1063 aaKnown RBP10.7□□□□□ -0.7
LINC00560-201ENST00000564593 CADPS2Q86UW7 1296 aa10.7□□□□□ -0.7
LINC00560-201ENST00000564593 PPP1R37O75864 691 aa10.69□□□□□ -0.7
LINC00560-201ENST00000564593 ZSWIM6Q9HCJ5 1215 aa10.69□□□□□ -0.7
LINC00560-201ENST00000564593 MYT1LQ9UL68 1186 aa10.68□□□□□ -0.7
LINC00560-201ENST00000564593 WDR70Q9NW82 654 aa10.67□□□□□ -0.7
LINC00560-201ENST00000564593 PRKCSHP14314 528 aaPredicted RBP10.65□□□□□ -0.7
LINC00560-201ENST00000564593 ZNF687Q8N1G0 1237 aa10.65□□□□□ -0.7
LINC00560-201ENST00000564593 TMEM92Q6UXU6 159 aa10.65□□□□□ -0.71
LINC00560-201ENST00000564593 MICALL2Q8IY33 904 aa10.65□□□□□ -0.71
LINC00560-201ENST00000564593 GPR153Q6NV75 609 aa10.62□□□□□ -0.71
LINC00560-201ENST00000564593 MS4A4AQ96JQ5 239 aa10.62□□□□□ -0.71
LINC00560-201ENST00000564593 TPRNQ4KMQ1 711 aa10.61□□□□□ -0.71
LINC00560-201ENST00000564593 P3H3Q8IVL6 736 aa10.61□□□□□ -0.71
LINC00560-201ENST00000564593 PTGER2P43116 358 aa10.6□□□□□ -0.71
LINC00560-201ENST00000564593 KCNV2Q8TDN2 545 aa10.54□□□□□ -0.72
LINC00560-201ENST00000564593 ARSIQ5FYB1 569 aa10.52□□□□□ -0.73
LINC00560-201ENST00000564593 PDE4AP27815 886 aa10.51□□□□□ -0.73
LINC00560-201ENST00000564593 NCKAP5LQ9HCH0 1330 aa10.5□□□□□ -0.73
LINC00560-201ENST00000564593 ANKRD13DQ6ZTN6 518 aa10.5□□□□□ -0.73
LINC00560-201ENST00000564593 LARP6Q9BRS8 491 aaKnown RBP10.5□□□□□ -0.73
LINC00560-201ENST00000564593 ZNF316A6NFI3 1004 aaPredicted RBP10.49□□□□□ -0.73
LINC00560-201ENST00000564593 E2F4Q16254 413 aa10.49□□□□□ -0.73
LINC00560-201ENST00000564593 LSM11P83369 360 aaKnown RBP eCLIP10.46□□□□□ -0.74
LINC00560-201ENST00000564593 CRISPLD2Q9H0B8 497 aa10.46□□□□□ -0.74
LINC00560-201ENST00000564593 ARHGEF1Q92888 912 aaKnown RBP10.45□□□□□ -0.74
LINC00560-201ENST00000564593 KHSRPQ92945 711 aaKnown RBP eCLIP10.44□□□□□ -0.74
LINC00560-201ENST00000564593 DDX27Q96GQ7 796 aaKnown RBP10.44□□□□□ -0.74
LINC00560-201ENST00000564593 MFSD10Q14728 455 aa10.43□□□□□ -0.74
LINC00560-201ENST00000564593 PBX2P40425 430 aa10.4□□□□□ -0.74
LINC00560-201ENST00000564593 GPHNQ9NQX3 736 aaPredicted RBP10.37□□□□□ -0.75
LINC00560-201ENST00000564593 TULP1O00294 542 aaPredicted RBP10.35□□□□□ -0.75
LINC00560-201ENST00000564593 KIF3CO14782 793 aa10.35□□□□□ -0.75
LINC00560-201ENST00000564593 NUDT7P0C024 238 aa10.35□□□□□ -0.75
LINC00560-201ENST00000564593 PPP1R15BQ5SWA1 713 aa10.35□□□□□ -0.75
LINC00560-201ENST00000564593 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.35□□□□□ -0.75
LINC00560-201ENST00000564593 CAMK2BQ13554 666 aa10.34□□□□□ -0.75
LINC00560-201ENST00000564593 SEMA3EO15041 775 aa10.33□□□□□ -0.76
LINC00560-201ENST00000564593 LMOD2Q6P5Q4 547 aa10.33□□□□□ -0.76
LINC00560-201ENST00000564593 POTEEQ6S8J3 1075 aa10.33□□□□□ -0.76
LINC00560-201ENST00000564593 TMC2Q8TDI7 906 aa10.33□□□□□ -0.76
LINC00560-201ENST00000564593 PLA2G2EQ9NZK7 142 aa10.33□□□□□ -0.76
LINC00560-201ENST00000564593 ARIH1Q9Y4X5 557 aaPredicted RBP10.32□□□□□ -0.76
LINC00560-201ENST00000564593 C2orf72A6NCS6 295 aa10.31□□□□□ -0.76
LINC00560-201ENST00000564593 SLC34A2O95436 690 aa10.31□□□□□ -0.76
LINC00560-201ENST00000564593 HCSTQ9UBK5 93 aa10.31□□□□□ -0.76
LINC00560-201ENST00000564593 LHX6Q9UPM6 363 aa10.31□□□□□ -0.76
LINC00560-201ENST00000564593 TESPA1A2RU30 521 aaPredicted RBP10.3□□□□□ -0.76
LINC00560-201ENST00000564593 DSG2Q14126 1118 aa10.3□□□□□ -0.76
LINC00560-201ENST00000564593 AXIN2Q9Y2T1 843 aa10.3□□□□□ -0.76
LINC00560-201ENST00000564593 PCDHGA4Q9Y5G9 962 aa10.29□□□□□ -0.76
LINC00560-201ENST00000564593 FOXK1P85037 733 aa10.27□□□□□ -0.76
LINC00560-201ENST00000564593 SMYD5Q6GMV2 418 aa10.25□□□□□ -0.77
LINC00560-201ENST00000564593 ADGRD1Q6QNK2 874 aa10.25□□□□□ -0.77
LINC00560-201ENST00000564593 PLPP6Q8IY26 295 aa10.24□□□□□ -0.77
LINC00560-201ENST00000564593 ARHGAP33O14559 1287 aa10.23□□□□□ -0.77
LINC00560-201ENST00000564593 EMILIN3Q9NT22 766 aa10.23□□□□□ -0.77
LINC00560-201ENST00000564593 PSDA5PKW4 1024 aaPredicted RBP10.22□□□□□ -0.77
LINC00560-201ENST00000564593 DPYSL4O14531 572 aa10.22□□□□□ -0.77
LINC00560-201ENST00000564593 TK2O00142 265 aa10.19□□□□□ -0.78
LINC00560-201ENST00000564593 ZC3H15Q8WU90 426 aaKnown RBP10.18□□□□□ -0.78
LINC00560-201ENST00000564593 SPDYE16A6NNV3 312 aaPredicted RBP10.18□□□□□ -0.78
LINC00560-201ENST00000564593 MLLT3P42568 568 aaPredicted RBP10.17□□□□□ -0.78
LINC00560-201ENST00000564593 KDM4FA0A1W2PPD8 638 aa10.16□□□□□ -0.78
LINC00560-201ENST00000564593 HRO43593 1189 aa10.16□□□□□ -0.78
LINC00560-201ENST00000564593 PDIA6Q15084 440 aa10.16□□□□□ -0.78
LINC00560-201ENST00000564593 MAP3K9P80192 1104 aa10.14□□□□□ -0.79
LINC00560-201ENST00000564593 DMRTA1Q5VZB9 504 aa10.14□□□□□ -0.79
LINC00560-201ENST00000564593 PTCD2Q8WV60 388 aaKnown RBP10.13□□□□□ -0.79
LINC00560-201ENST00000564593 UPF1Q92900 1129 aaKnown RBP eCLIP10.13□□□□□ -0.79
LINC00560-201ENST00000564593 PSEN2P49810 448 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms