RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 AEBP2Q6ZN18 517 aaPredicted RBP24.69■■□□□ 1.54
LINC00560-201ENST00000564593 CHIC1Q5VXU3 224 aa23.1■■□□□ 1.29
LINC00560-201ENST00000564593 SENP3Q9H4L4 574 aaPredicted RBP21.15■□□□□ 0.98
LINC00560-201ENST00000564593 PHF23Q9BUL5 403 aaPredicted RBP20.8■□□□□ 0.92
LINC00560-201ENST00000564593 FOXD1Q16676 465 aa19.74■□□□□ 0.75
LINC00560-201ENST00000564593 POTEDQ86YR6 584 aa18.99■□□□□ 0.63
LINC00560-201ENST00000564593 MSH5O43196 834 aa18.64■□□□□ 0.58
LINC00560-201ENST00000564593 PIAS4Q8N2W9 510 aaPredicted RBP18.35■□□□□ 0.53
LINC00560-201ENST00000564593 PLPPR3Q6T4P5 718 aa18.3■□□□□ 0.52
LINC00560-201ENST00000564593 PPP6R1Q9UPN7 881 aa18.15■□□□□ 0.5
LINC00560-201ENST00000564593 ADRA2BP18089 450 aa18.07■□□□□ 0.48
LINC00560-201ENST00000564593 DMRT2Q9Y5R5 561 aa16.72■□□□□ 0.27
LINC00560-201ENST00000564593 MAPK8IP2Q13387 824 aaPredicted RBP16.7■□□□□ 0.26
LINC00560-201ENST00000564593 SCAF1Q9H7N4 1312 aaKnown RBP16.58■□□□□ 0.24
LINC00560-201ENST00000564593 CACNB1Q02641 598 aaPredicted RBP16.21■□□□□ 0.18
LINC00560-201ENST00000564593 DCAF8L1A6NGE4 600 aa16■□□□□ 0.15
LINC00560-201ENST00000564593 PPP4R3CPQ6ZMV5 832 aa15.97■□□□□ 0.15
LINC00560-201ENST00000564593 HOXD11P31277 338 aaPredicted RBP15.96■□□□□ 0.15
LINC00560-201ENST00000564593 RNF39Q9H2S5 420 aa15.87■□□□□ 0.13
LINC00560-201ENST00000564593 CNKSR2Q8WXI2 1034 aa15.78■□□□□ 0.12
LINC00560-201ENST00000564593 RNF216Q9NWF9 866 aaPredicted RBP15.74■□□□□ 0.11
LINC00560-201ENST00000564593 C1QBPQ07021 282 aaKnown RBP15.62■□□□□ 0.09
LINC00560-201ENST00000564593 DNAJC5BQ9UF47 199 aa15.52■□□□□ 0.07
LINC00560-201ENST00000564593 NCBP3Q53F19 620 aaKnown RBP15.27■□□□□ 0.03
LINC00560-201ENST00000564593 KCNA4P22459 653 aa15.26■□□□□ 0.03
LINC00560-201ENST00000564593 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.18■□□□□ 0.02
LINC00560-201ENST00000564593 NPM3O75607 178 aaKnown RBP15.02□□□□□ -0.01
LINC00560-201ENST00000564593 U3KPZ7 1027 aaPredicted RBP14.82□□□□□ -0.04
LINC00560-201ENST00000564593 DSG3P32926 999 aa14.72□□□□□ -0.05
LINC00560-201ENST00000564593 CAPN15O75808 1086 aa14.7□□□□□ -0.06
LINC00560-201ENST00000564593 SPINK5Q9NQ38 1064 aaPredicted RBP14.7□□□□□ -0.06
LINC00560-201ENST00000564593 POTEHQ6S545 545 aa14.68□□□□□ -0.06
LINC00560-201ENST00000564593 EHMT2Q96KQ7 1210 aa14.67□□□□□ -0.06
LINC00560-201ENST00000564593 SLC4A1APQ9BWU0 796 aaKnown RBP14.61□□□□□ -0.07
LINC00560-201ENST00000564593 SLC4A2P04920 1241 aa14.44□□□□□ -0.1
LINC00560-201ENST00000564593 APLP2Q06481 763 aa14.41□□□□□ -0.1
LINC00560-201ENST00000564593 TRHP20396 242 aaPredicted RBP14.37□□□□□ -0.11
LINC00560-201ENST00000564593 ZNF219Q9P2Y4 722 aaPredicted RBP14.36□□□□□ -0.11
LINC00560-201ENST00000564593 ABCB7O75027 752 aa14.31□□□□□ -0.12
LINC00560-201ENST00000564593 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.3□□□□□ -0.12
LINC00560-201ENST00000564593 HNRNPUL2Q1KMD3 747 aaKnown RBP14.3□□□□□ -0.12
LINC00560-201ENST00000564593 CSRNP3Q8WYN3 585 aa14.3□□□□□ -0.12
LINC00560-201ENST00000564593 SAMD1Q6SPF0 538 aaPredicted RBP14.19□□□□□ -0.14
LINC00560-201ENST00000564593 RBM42Q9BTD8 480 aaKnown RBP14.09□□□□□ -0.15
LINC00560-201ENST00000564593 ZBTB22O15209 634 aa14.04□□□□□ -0.16
LINC00560-201ENST00000564593 FOXD4L1Q9NU39 408 aa13.93□□□□□ -0.18
LINC00560-201ENST00000564593 MYCNP04198 464 aaPredicted RBP13.92□□□□□ -0.18
LINC00560-201ENST00000564593 POLA2Q14181 598 aa13.91□□□□□ -0.18
LINC00560-201ENST00000564593 CHRDL2Q6WN34 429 aa13.91□□□□□ -0.18
LINC00560-201ENST00000564593 AKT1S1Q96B36 256 aa13.67□□□□□ -0.22
LINC00560-201ENST00000564593 ZBTB12Q9Y330 459 aaPredicted RBP13.64□□□□□ -0.23
LINC00560-201ENST00000564593 SP7Q8TDD2 431 aaPredicted RBP13.58□□□□□ -0.23
LINC00560-201ENST00000564593 ATF5Q9Y2D1 282 aaPredicted RBP13.58□□□□□ -0.23
LINC00560-201ENST00000564593 REM2Q8IYK8 340 aaPredicted RBP13.53□□□□□ -0.24
LINC00560-201ENST00000564593 PIP4P2Q8N4L2 257 aa13.49□□□□□ -0.25
LINC00560-201ENST00000564593 OSCARQ8IYS5 282 aa13.48□□□□□ -0.25
LINC00560-201ENST00000564593 ATXN8OSP0DMR3 200 aa13.41□□□□□ -0.26
LINC00560-201ENST00000564593 PITPNM1O00562 1244 aa13.38□□□□□ -0.27
LINC00560-201ENST00000564593 FXR2P51116 673 aaKnown RBP eCLIP13.37□□□□□ -0.27
LINC00560-201ENST00000564593 HAX1O00165 279 aa13.33□□□□□ -0.28
LINC00560-201ENST00000564593 SPDYE2BA6NHP3 402 aa13.18□□□□□ -0.3
LINC00560-201ENST00000564593 SPDYE6P0CI01 402 aa13.18□□□□□ -0.3
LINC00560-201ENST00000564593 SPDYE2Q495Y8 402 aa13.18□□□□□ -0.3
LINC00560-201ENST00000564593 EVX2Q03828 476 aa13.13□□□□□ -0.31
LINC00560-201ENST00000564593 FBLN2P98095 1184 aa13.12□□□□□ -0.31
LINC00560-201ENST00000564593 SPDYE1Q8NFV5 336 aaPredicted RBP13.03□□□□□ -0.32
LINC00560-201ENST00000564593 PRKAR2AP13861 404 aaKnown RBP13.03□□□□□ -0.32
LINC00560-201ENST00000564593 CLEC11AQ9Y240 323 aa12.99□□□□□ -0.33
LINC00560-201ENST00000564593 MKRN4PQ13434 485 aaPredicted RBP12.96□□□□□ -0.33
LINC00560-201ENST00000564593 C19orf67A6NJJ6 358 aa12.95□□□□□ -0.34
LINC00560-201ENST00000564593 SSUH2Q9Y2M2 353 aa12.95□□□□□ -0.34
LINC00560-201ENST00000564593 ZNF692Q9BU19 519 aaPredicted RBP12.93□□□□□ -0.34
LINC00560-201ENST00000564593 FKBP8Q14318 412 aa12.91□□□□□ -0.34
LINC00560-201ENST00000564593 GABBR2O75899 941 aa12.83□□□□□ -0.36
LINC00560-201ENST00000564593 CHADLQ6NUI6 762 aa12.78□□□□□ -0.36
LINC00560-201ENST00000564593 PRR29P0C7W0 189 aa12.75□□□□□ -0.37
LINC00560-201ENST00000564593 LHX8Q68G74 356 aa12.73□□□□□ -0.37
LINC00560-201ENST00000564593 PABPN1Q86U42 306 aaKnown RBP eCLIP12.73□□□□□ -0.37
LINC00560-201ENST00000564593 PLSCR2Q9NRY7 297 aa12.72□□□□□ -0.37
LINC00560-201ENST00000564593 CD44P16070 742 aaKnown RBP12.6□□□□□ -0.39
LINC00560-201ENST00000564593 FARP1Q9Y4F1 1045 aaPredicted RBP12.58□□□□□ -0.4
LINC00560-201ENST00000564593 POTEIP0CG38 1075 aa12.56□□□□□ -0.4
LINC00560-201ENST00000564593 CLCN6P51797 869 aa12.56□□□□□ -0.4
LINC00560-201ENST00000564593 SPDYE4A6NLX3 237 aa12.52□□□□□ -0.4
LINC00560-201ENST00000564593 AMER1Q5JTC6 1135 aaPredicted RBP12.45□□□□□ -0.42
LINC00560-201ENST00000564593 RTN4Q9NQC3 1192 aaKnown RBP12.43□□□□□ -0.42
LINC00560-201ENST00000564593 ZNF579Q8NAF0 562 aaKnown RBP12.41□□□□□ -0.42
LINC00560-201ENST00000564593 DCBLD2Q96PD2 775 aa12.41□□□□□ -0.42
LINC00560-201ENST00000564593 ZRANB1Q9UGI0 708 aa12.35□□□□□ -0.43
LINC00560-201ENST00000564593 FBXO3Q9UK99 471 aa12.35□□□□□ -0.43
LINC00560-201ENST00000564593 CREBZFQ9NS37 354 aa12.34□□□□□ -0.43
LINC00560-201ENST00000564593 STAG3Q9UJ98 1225 aa12.33□□□□□ -0.44
LINC00560-201ENST00000564593 PROM2Q8N271 834 aa12.32□□□□□ -0.44
LINC00560-201ENST00000564593 GALR2O43603 387 aaPredicted RBP12.25□□□□□ -0.45
LINC00560-201ENST00000564593 PAK3O75914 559 aaPredicted RBP12.18□□□□□ -0.46
LINC00560-201ENST00000564593 OTUD5Q96G74 571 aa12.17□□□□□ -0.46
LINC00560-201ENST00000564593 VASPP50552 380 aaPredicted RBP12.15□□□□□ -0.46
LINC00560-201ENST00000564593 PHF12Q96QT6 1004 aa12.14□□□□□ -0.47
LINC00560-201ENST00000564593 POTEB2H3BUK9 544 aa12.13□□□□□ -0.47
LINC00560-201ENST00000564593 NPM1P06748 294 aaKnown RBP eCLIP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms