RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 ARID4BQ4LE39 1312 aaPredicted RBP16.36■□□□□ 0.21
TPM1-229ENST00000561242 SCAPERQ9BY12 1400 aa16.36■□□□□ 0.21
TPM1-229ENST00000561242 DENND4BO75064 1496 aaPredicted RBP16.35■□□□□ 0.21
TPM1-229ENST00000561242 FAM50AQ14320 339 aaKnown RBP16.34■□□□□ 0.21
TPM1-229ENST00000561242 MAP3K4Q9Y6R4 1608 aa16.34■□□□□ 0.21
TPM1-229ENST00000561242 HNRNPMP52272 730 aaKnown RBP eCLIP16.33■□□□□ 0.2
TPM1-229ENST00000561242 ADGRL1O94910 1474 aa16.33■□□□□ 0.2
TPM1-229ENST00000561242 PLEKHH2Q8IVE3 1493 aa16.33■□□□□ 0.2
TPM1-229ENST00000561242 KDM6BO15054 1643 aa16.33■□□□□ 0.2
TPM1-229ENST00000561242 NCOA2Q15596 1464 aa16.32■□□□□ 0.2
TPM1-229ENST00000561242 CFAP74Q9C0B2 1584 aa16.32■□□□□ 0.2
TPM1-229ENST00000561242 KIF13AQ9H1H9 1805 aa16.32■□□□□ 0.2
TPM1-229ENST00000561242 SPAG9O60271 1321 aaKnown RBP16.3■□□□□ 0.2
TPM1-229ENST00000561242 GPATCH8Q9UKJ3 1502 aaKnown RBP16.29■□□□□ 0.2
TPM1-229ENST00000561242 SUPT6HQ7KZ85 1726 aaKnown RBP16.29■□□□□ 0.2
TPM1-229ENST00000561242 AFAP1Q8N556 730 aa16.29■□□□□ 0.2
TPM1-229ENST00000561242 ESF1Q9H501 851 aaKnown RBP16.29■□□□□ 0.2
TPM1-229ENST00000561242 TTC37Q6PGP7 1564 aa16.27■□□□□ 0.2
TPM1-229ENST00000561242 ARAP3Q8WWN8 1544 aa16.27■□□□□ 0.2
TPM1-229ENST00000561242 MYOM3Q5VTT5 1437 aa16.25■□□□□ 0.19
TPM1-229ENST00000561242 MIA2Q96PC5 1412 aa16.25■□□□□ 0.19
TPM1-229ENST00000561242 MYO5CQ9NQX4 1742 aa16.24■□□□□ 0.19
TPM1-229ENST00000561242 ZNF518AQ6AHZ1 1483 aa16.23■□□□□ 0.19
TPM1-229ENST00000561242 ZNF644Q9H582 1327 aaPredicted RBP16.23■□□□□ 0.19
TPM1-229ENST00000561242 KIAA1107Q9UPP5 1409 aa16.23■□□□□ 0.19
TPM1-229ENST00000561242 ITGAEP38570 1179 aa16.23■□□□□ 0.19
TPM1-229ENST00000561242 LRRIQ1Q96JM4 1722 aa16.2■□□□□ 0.18
TPM1-229ENST00000561242 MAGI2Q86UL8 1455 aa16.19■□□□□ 0.18
TPM1-229ENST00000561242 POGZQ7Z3K3 1410 aa16.19■□□□□ 0.18
TPM1-229ENST00000561242 ITSN2Q9NZM3 1697 aa16.18■□□□□ 0.18
TPM1-229ENST00000561242 MLECQ14165 292 aa16.17■□□□□ 0.18
TPM1-229ENST00000561242 COL17A1Q9UMD9 1497 aaPredicted RBP16.16■□□□□ 0.18
TPM1-229ENST00000561242 PREX2Q70Z35 1606 aa16.16■□□□□ 0.18
TPM1-229ENST00000561242 FGD6Q6ZV73 1430 aa16.15■□□□□ 0.18
TPM1-229ENST00000561242 CHIC2Q9UKJ5 165 aa16.15■□□□□ 0.18
TPM1-229ENST00000561242 TRAPPC8Q9Y2L5 1435 aa16.14■□□□□ 0.17
TPM1-229ENST00000561242 CAMSAP2Q08AD1 1489 aa16.14■□□□□ 0.17
TPM1-229ENST00000561242 PPRC1Q5VV67 1664 aaKnown RBP16.14■□□□□ 0.17
TPM1-229ENST00000561242 CCDC141Q6ZP82 1450 aa16.12■□□□□ 0.17
TPM1-229ENST00000561242 ATP10AO60312 1499 aa16.11■□□□□ 0.17
TPM1-229ENST00000561242 SYCP2Q9BX26 1530 aa16.11■□□□□ 0.17
TPM1-229ENST00000561242 RRP7BPQ9NSQ0 103 aa16.11■□□□□ 0.17
TPM1-229ENST00000561242 ANKRD30AQ9BXX3 1397 aa16.11■□□□□ 0.17
TPM1-229ENST00000561242 ABCC1P33527 1531 aa16.1■□□□□ 0.17
TPM1-229ENST00000561242 ZFYVE16Q7Z3T8 1539 aa16.1■□□□□ 0.17
TPM1-229ENST00000561242 GGT6Q6P531 493 aa16.1■□□□□ 0.17
TPM1-229ENST00000561242 PLPPR3Q6T4P5 718 aa16.09■□□□□ 0.17
TPM1-229ENST00000561242 RTEL1-TNFRSF6BF6WH68 1400 aa16.09■□□□□ 0.17
TPM1-229ENST00000561242 MLH3Q9UHC1 1453 aa16.09■□□□□ 0.17
TPM1-229ENST00000561242 CDC42BPAQ5VT25 1732 aa16.08■□□□□ 0.17
TPM1-229ENST00000561242 KIF3BO15066 747 aa16.08■□□□□ 0.16
TPM1-229ENST00000561242 C9orf84Q5VXU9 1444 aa16.08■□□□□ 0.16
TPM1-229ENST00000561242 CDC42BPBQ9Y5S2 1711 aa16.08■□□□□ 0.16
TPM1-229ENST00000561242 SAMD9LQ8IVG5 1584 aa16.07■□□□□ 0.16
TPM1-229ENST00000561242 YEATS2Q9ULM3 1422 aa16.05■□□□□ 0.16
TPM1-229ENST00000561242 ARHGEF12Q9NZN5 1544 aa16.04■□□□□ 0.16
TPM1-229ENST00000561242 PPP6R1Q9UPN7 881 aa16.04■□□□□ 0.16
TPM1-229ENST00000561242 PTPN23Q9H3S7 1636 aa16.04■□□□□ 0.16
TPM1-229ENST00000561242 MBD5Q9P267 1494 aa16.03■□□□□ 0.16
TPM1-229ENST00000561242 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.03■□□□□ 0.164e-7■■■□□ 19
TPM1-229ENST00000561242 DAPK1P53355 1430 aa16.02■□□□□ 0.16
TPM1-229ENST00000561242 DHX29Q7Z478 1369 aaKnown RBP16.02■□□□□ 0.16
TPM1-229ENST00000561242 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.02■□□□□ 0.16
TPM1-229ENST00000561242 HECW2Q9P2P5 1572 aa16.02■□□□□ 0.16
TPM1-229ENST00000561242 ZMYM4Q5VZL5 1548 aa16.02■□□□□ 0.15
TPM1-229ENST00000561242 KANK1Q14678 1352 aa16.01■□□□□ 0.15
TPM1-229ENST00000561242 WASHC2CQ9Y4E1 1318 aa16.01■□□□□ 0.15
TPM1-229ENST00000561242 A2MP01023 1474 aa16.01■□□□□ 0.15
TPM1-229ENST00000561242 TCOF1Q13428 1488 aaKnown RBP16.01■□□□□ 0.15
TPM1-229ENST00000561242 KIF15Q9NS87 1388 aa16■□□□□ 0.15
TPM1-229ENST00000561242 ATP7AQ04656 1500 aa16■□□□□ 0.15
TPM1-229ENST00000561242 ABCC5O15440 1437 aa16■□□□□ 0.15
TPM1-229ENST00000561242 ARHGEF5Q12774 1597 aa15.99■□□□□ 0.15
TPM1-229ENST00000561242 ACIN1Q9UKV3 1341 aaKnown RBP15.98■□□□□ 0.15
TPM1-229ENST00000561242 KDM5CP41229 1560 aa15.98■□□□□ 0.15
TPM1-229ENST00000561242 RICTORQ6R327 1708 aa15.97■□□□□ 0.15
TPM1-229ENST00000561242 ARHGEF40Q8TER5 1519 aa15.97■□□□□ 0.15
TPM1-229ENST00000561242 TRIM52Q96A61 297 aa15.96■□□□□ 0.15
TPM1-229ENST00000561242 SHANK2Q9UPX8 1470 aa15.95■□□□□ 0.14
TPM1-229ENST00000561242 FRMPD1Q5SYB0 1578 aa15.95■□□□□ 0.14
TPM1-229ENST00000561242 RRBP1Q9P2E9 1410 aaKnown RBP15.94■□□□□ 0.14
TPM1-229ENST00000561242 KDM4FA0A1W2PPD8 638 aa15.94■□□□□ 0.14
TPM1-229ENST00000561242 ROCK1Q13464 1354 aa15.92■□□□□ 0.14
TPM1-229ENST00000561242 CNTLNQ9NXG0 1405 aa15.92■□□□□ 0.14
TPM1-229ENST00000561242 NCOA1Q15788 1441 aa15.91■□□□□ 0.14
TPM1-229ENST00000561242 DUOX2Q9NRD8 1548 aa15.9■□□□□ 0.14
TPM1-229ENST00000561242 DIP2CQ9Y2E4 1556 aa15.89■□□□□ 0.13
TPM1-229ENST00000561242 ANKRD50Q9ULJ7 1429 aa15.89■□□□□ 0.13
TPM1-229ENST00000561242 ERBINQ96RT1 1412 aa15.88■□□□□ 0.13
TPM1-229ENST00000561242 DNMT1P26358 1616 aaKnown RBP15.88■□□□□ 0.13
TPM1-229ENST00000561242 AGLP35573 1532 aa15.88■□□□□ 0.13
TPM1-229ENST00000561242 TRIM26Q12899 539 aaPredicted RBP15.87■□□□□ 0.13
TPM1-229ENST00000561242 MAST1Q9Y2H9 1570 aa15.87■□□□□ 0.13
TPM1-229ENST00000561242 STAG3Q9UJ98 1225 aa15.86■□□□□ 0.13
TPM1-229ENST00000561242 KIDINS220Q9ULH0 1771 aa15.85■□□□□ 0.13
TPM1-229ENST00000561242 REREQ9P2R6 1566 aa15.85■□□□□ 0.13
TPM1-229ENST00000561242 INO80Q9ULG1 1556 aaPredicted RBP15.85■□□□□ 0.13
TPM1-229ENST00000561242 CEBPAP49715 358 aaPredicted RBP15.85■□□□□ 0.13
TPM1-229ENST00000561242 ABCA6Q8N139 1617 aa15.84■□□□□ 0.13
TPM1-229ENST00000561242 ADGBQ8N7X0 1667 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms