RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 CADPSQ9ULU8 1353 aa22.12■■□□□ 1.13
TPM1-228ENST00000560975 HECW1Q76N89 1606 aa22.11■■□□□ 1.13
TPM1-228ENST00000560975 EXOC6Q8TAG9 804 aa22.1■■□□□ 1.13
TPM1-228ENST00000560975 SUPT6HQ7KZ85 1726 aaKnown RBP22.1■■□□□ 1.13
TPM1-228ENST00000560975 LRRIQ1Q96JM4 1722 aa22.1■■□□□ 1.13
TPM1-228ENST00000560975 ZNF326Q5BKZ1 582 aaKnown RBP22.09■■□□□ 1.13
TPM1-228ENST00000560975 PRDM2Q13029 1718 aa22.09■■□□□ 1.13
TPM1-228ENST00000560975 PDE4AP27815 886 aa22.08■■□□□ 1.13
TPM1-228ENST00000560975 TMC1Q8TDI8 760 aa22.08■■□□□ 1.13
TPM1-228ENST00000560975 DHX29Q7Z478 1369 aaKnown RBP22.08■■□□□ 1.12
TPM1-228ENST00000560975 SPATA31E1Q6ZUB1 1445 aa22.08■■□□□ 1.12
TPM1-228ENST00000560975 ARID3CA6NKF2 412 aa22.06■■□□□ 1.12
TPM1-228ENST00000560975 CTTNBP2Q8WZ74 1663 aa22.05■■□□□ 1.12
TPM1-228ENST00000560975 PNISRQ8TF01 805 aaKnown RBP22.05■■□□□ 1.12
TPM1-228ENST00000560975 ANKRD30BQ9BXX2 1392 aa22.03■■□□□ 1.12
TPM1-228ENST00000560975 GCC2Q8IWJ2 1684 aa22.03■■□□□ 1.12
TPM1-228ENST00000560975 TCERG1O14776 1098 aaKnown RBP22.03■■□□□ 1.12
TPM1-228ENST00000560975 EHBP1L1Q8N3D4 1523 aa22.03■■□□□ 1.12
TPM1-228ENST00000560975 UGGT2Q9NYU1 1516 aa22.03■■□□□ 1.12
TPM1-228ENST00000560975 GRIN2BQ13224 1484 aa22.03■■□□□ 1.12
TPM1-228ENST00000560975 RRP1P56182 461 aaKnown RBP22.02■■□□□ 1.12
TPM1-228ENST00000560975 SLC4A1APQ9BWU0 796 aaKnown RBP22.02■■□□□ 1.12
TPM1-228ENST00000560975 RPRD2Q5VT52 1461 aaKnown RBP22.02■■□□□ 1.11
TPM1-228ENST00000560975 MAGI3Q5TCQ9 1506 aa22.01■■□□□ 1.11
TPM1-228ENST00000560975 USP35Q9P2H5 1018 aa22.01■■□□□ 1.11
TPM1-228ENST00000560975 TEX14Q8IWB6 1497 aa22■■□□□ 1.11
TPM1-228ENST00000560975 BACH2Q9BYV9 841 aa22■■□□□ 1.11
TPM1-228ENST00000560975 BRPF3Q9ULD4 1205 aa21.99■■□□□ 1.11
TPM1-228ENST00000560975 ABCA5Q8WWZ7 1642 aa21.98■■□□□ 1.11
TPM1-228ENST00000560975 SKAP1Q86WV1 359 aa21.98■■□□□ 1.11
TPM1-228ENST00000560975 PPM1GO15355 546 aaPredicted RBP21.97■■□□□ 1.11
TPM1-228ENST00000560975 ABCA10Q8WWZ4 1543 aa21.97■■□□□ 1.11
TPM1-228ENST00000560975 TCOF1Q13428 1488 aaKnown RBP21.95■■□□□ 1.11
TPM1-228ENST00000560975 RCAN3Q9UKA8 241 aa21.95■■□□□ 1.1
TPM1-228ENST00000560975 USP47Q96K76 1375 aa21.95■■□□□ 1.1
TPM1-228ENST00000560975 POLA1P09884 1462 aaPredicted RBP21.95■■□□□ 1.1
TPM1-228ENST00000560975 FANCD2Q9BXW9 1451 aa21.95■■□□□ 1.1
TPM1-228ENST00000560975 WASHC2CQ9Y4E1 1318 aa21.95■■□□□ 1.1
TPM1-228ENST00000560975 POLR1AO95602 1720 aaPredicted RBP21.94■■□□□ 1.1
TPM1-228ENST00000560975 CUL7Q14999 1698 aa21.93■■□□□ 1.1
TPM1-228ENST00000560975 CC2D2AQ9P2K1 1620 aa21.93■■□□□ 1.1
TPM1-228ENST00000560975 ARHGEF11O15085 1522 aa21.93■■□□□ 1.1
TPM1-228ENST00000560975 SLC4A3P48751 1232 aa21.91■■□□□ 1.1
TPM1-228ENST00000560975 SAMD9Q5K651 1589 aa21.91■■□□□ 1.1
TPM1-228ENST00000560975 BCORL1Q5H9F3 1711 aa21.91■■□□□ 1.1
TPM1-228ENST00000560975 MIA2Q96PC5 1412 aa21.9■■□□□ 1.1
TPM1-228ENST00000560975 PLIN1O60240 522 aa21.88■■□□□ 1.09
TPM1-228ENST00000560975 MS4A1P11836 297 aa21.88■■□□□ 1.09
TPM1-228ENST00000560975 TDRD9Q8NDG6 1382 aaKnown RBP21.87■■□□□ 1.09
TPM1-228ENST00000560975 GSE1Q14687 1217 aa21.87■■□□□ 1.09
TPM1-228ENST00000560975 THOC2Q8NI27 1593 aaKnown RBP21.86■■□□□ 1.09
TPM1-228ENST00000560975 TOPBP1Q92547 1522 aa21.86■■□□□ 1.09
TPM1-228ENST00000560975 EIF5BO60841 1220 aaKnown RBP21.85■■□□□ 1.09
TPM1-228ENST00000560975 ZNF644Q9H582 1327 aaPredicted RBP21.85■■□□□ 1.09
TPM1-228ENST00000560975 DNMBPQ6XZF7 1577 aa21.85■■□□□ 1.09
TPM1-228ENST00000560975 NFKBIBQ15653 356 aa21.84■■□□□ 1.09
TPM1-228ENST00000560975 CDCA7LQ96GN5 454 aa21.84■■□□□ 1.09
TPM1-228ENST00000560975 LRPPRCP42704 1394 aaKnown RBP21.83■■□□□ 1.08
TPM1-228ENST00000560975 DDRGK1Q96HY6 314 aa21.82■■□□□ 1.08
TPM1-228ENST00000560975 CDK13Q14004 1512 aaKnown RBP21.82■■□□□ 1.08
TPM1-228ENST00000560975 FRAT1Q92837 279 aaPredicted RBP21.81■■□□□ 1.08
TPM1-228ENST00000560975 MYBBP1AQ9BQG0 1328 aaKnown RBP21.81■■□□□ 1.08
TPM1-228ENST00000560975 KIF15Q9NS87 1388 aa21.81■■□□□ 1.08
TPM1-228ENST00000560975 DAPK1P53355 1430 aa21.8■■□□□ 1.08
TPM1-228ENST00000560975 CRBNQ96SW2 442 aa21.79■■□□□ 1.08
TPM1-228ENST00000560975 CARD11Q9BXL7 1154 aa21.79■■□□□ 1.08
TPM1-228ENST00000560975 DAXXQ9UER7 740 aaPredicted RBP21.79■■□□□ 1.08
TPM1-228ENST00000560975 BRD4O60885 1362 aaPredicted RBP21.78■■□□□ 1.08
TPM1-228ENST00000560975 EPRSP07814 1512 aaKnown RBP21.77■■□□□ 1.08
TPM1-228ENST00000560975 ABCC5O15440 1437 aa21.76■■□□□ 1.07
TPM1-228ENST00000560975 ARID4BQ4LE39 1312 aaPredicted RBP21.76■■□□□ 1.07
TPM1-228ENST00000560975 KDM2AQ9Y2K7 1162 aa21.75■■□□□ 1.07
TPM1-228ENST00000560975 ROCK2O75116 1388 aaKnown RBP21.75■■□□□ 1.07
TPM1-228ENST00000560975 ST20-MTHFSA0A0A6YYL1 179 aa21.75■■□□□ 1.07
TPM1-228ENST00000560975 ROCK1Q13464 1354 aa21.75■■□□□ 1.07
TPM1-228ENST00000560975 PKD2Q13563 968 aa21.74■■□□□ 1.07
TPM1-228ENST00000560975 RALBP1Q15311 655 aa21.74■■□□□ 1.07
TPM1-228ENST00000560975 KDM5CP41229 1560 aa21.72■■□□□ 1.07
TPM1-228ENST00000560975 MBD5Q9P267 1494 aa21.72■■□□□ 1.07
TPM1-228ENST00000560975 PZPP20742 1482 aa21.72■■□□□ 1.07
TPM1-228ENST00000560975 NESP48681 1621 aa21.71■■□□□ 1.07
TPM1-228ENST00000560975 UBE2Q2Q8WVN8 375 aa21.71■■□□□ 1.07
TPM1-228ENST00000560975 PDE3BQ13370 1112 aa21.7■■□□□ 1.06
TPM1-228ENST00000560975 GAPVD1Q14C86 1478 aa21.69■■□□□ 1.06
TPM1-228ENST00000560975 C20orf194Q5TEA3 1177 aa21.69■■□□□ 1.06
TPM1-228ENST00000560975 NLRP13Q86W25 1043 aa21.68■■□□□ 1.06
TPM1-228ENST00000560975 FRAT2O75474 233 aaPredicted RBP21.67■■□□□ 1.06
TPM1-228ENST00000560975 KIAA1107Q9UPP5 1409 aa21.66■■□□□ 1.06
TPM1-228ENST00000560975 KIF14Q15058 1648 aa21.66■■□□□ 1.06
TPM1-228ENST00000560975 ZNF777Q9ULD5 760 aaPredicted RBP21.65■■□□□ 1.06
TPM1-228ENST00000560975 DNMT1P26358 1616 aaKnown RBP21.64■■□□□ 1.05
TPM1-228ENST00000560975 CC2D1BQ5T0F9 858 aaKnown RBP21.62■■□□□ 1.05
TPM1-228ENST00000560975 KIF21AQ7Z4S6 1674 aa21.62■■□□□ 1.05
TPM1-228ENST00000560975 KTN1Q86UP2 1357 aaKnown RBP21.62■■□□□ 1.05
TPM1-228ENST00000560975 LAMC3Q9Y6N6 1575 aa21.61■■□□□ 1.05
TPM1-228ENST00000560975 DCAF11Q8TEB1 546 aa21.6■■□□□ 1.05
TPM1-228ENST00000560975 RGS3P49796 1198 aa21.59■■□□□ 1.05
TPM1-228ENST00000560975 RALGAPBQ86X10 1494 aa21.59■■□□□ 1.05
TPM1-228ENST00000560975 URB2Q14146 1524 aaKnown RBP21.58■■□□□ 1.05
TPM1-228ENST00000560975 FAM161AQ3B820 660 aa21.58■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms