RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 NISCHQ9Y2I1 1504 aa31.49■■■□□ 2.63
TPM1-228ENST00000560975 SHROOM4Q9ULL8 1493 aa28.03■■■□□ 2.08
TPM1-228ENST00000560975 SUPT5HO00267 1087 aaKnown RBP27.87■■■□□ 2.05
TPM1-228ENST00000560975 HRCP23327 699 aa27.83■■■□□ 2.05
TPM1-228ENST00000560975 PCGF6Q9BYE7 350 aa27.46■■□□□ 1.99
TPM1-228ENST00000560975 PPARGC1BQ86YN6 1023 aaKnown RBP27.41■■□□□ 1.98
TPM1-228ENST00000560975 MYO15BQ96JP2 1530 aa27.39■■□□□ 1.98
TPM1-228ENST00000560975 CHIC1Q5VXU3 224 aa27.26■■□□□ 1.95
TPM1-228ENST00000560975 ZCCHC6Q5VYS8 1495 aaKnown RBP26.75■■□□□ 1.87
TPM1-228ENST00000560975 LOC105371045A0A1W2PR82 267 aa26.71■■□□□ 1.87
TPM1-228ENST00000560975 DCAF1Q9Y4B6 1507 aa26.64■■□□□ 1.86
TPM1-228ENST00000560975 DCAF8L2P0C7V8 631 aa26.56■■□□□ 1.84
TPM1-228ENST00000560975 TRIM26Q12899 539 aaPredicted RBP26.51■■□□□ 1.83
TPM1-228ENST00000560975 PELP1Q8IZL8 1130 aaKnown RBP26.49■■□□□ 1.83
TPM1-228ENST00000560975 SCAF1Q9H7N4 1312 aaKnown RBP26.29■■□□□ 1.8
TPM1-228ENST00000560975 CCDC180Q9P1Z9 1646 aa26.28■■□□□ 1.8
TPM1-228ENST00000560975 ZEB1P37275 1124 aaPredicted RBP26.18■■□□□ 1.78
TPM1-228ENST00000560975 FAM9AQ8IZU1 332 aaPredicted RBP25.82■■□□□ 1.72
TPM1-228ENST00000560975 EHMT2Q96KQ7 1210 aa25.81■■□□□ 1.72
TPM1-228ENST00000560975 TRIM41Q8WV44 630 aa25.72■■□□□ 1.71
TPM1-228ENST00000560975 ACIN1Q9UKV3 1341 aaKnown RBP25.66■■□□□ 1.7
TPM1-228ENST00000560975 NEUROD1Q13562 356 aa25.65■■□□□ 1.7
TPM1-228ENST00000560975 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.52■■□□□ 1.68
TPM1-228ENST00000560975 GTF3C3Q9Y5Q9 886 aa25.5■■□□□ 1.67
TPM1-228ENST00000560975 CCER1Q8TC90 406 aaPredicted RBP25.44■■□□□ 1.66
TPM1-228ENST00000560975 ABCC9O60706 1549 aa25.39■■□□□ 1.65
TPM1-228ENST00000560975 CENPBP07199 599 aaPredicted RBP25.36■■□□□ 1.65
TPM1-228ENST00000560975 DIEXFQ68CQ4 756 aaKnown RBP25.35■■□□□ 1.65
TPM1-228ENST00000560975 RSF1Q96T23 1441 aaPredicted RBP25.35■■□□□ 1.65
TPM1-228ENST00000560975 MYT1Q01538 1121 aa25.35■■□□□ 1.65
TPM1-228ENST00000560975 RB1CC1Q8TDY2 1594 aa25.25■■□□□ 1.63
TPM1-228ENST00000560975 TTBK1Q5TCY1 1321 aaPredicted RBP25.15■■□□□ 1.62
TPM1-228ENST00000560975 SCRIBQ14160 1630 aa25.07■■□□□ 1.6
TPM1-228ENST00000560975 YTHDC1Q96MU7 727 aaKnown RBP25.05■■□□□ 1.6
TPM1-228ENST00000560975 ZNF316A6NFI3 1004 aaPredicted RBP24.87■■□□□ 1.57
TPM1-228ENST00000560975 MIER1Q8N108 512 aa24.74■■□□□ 1.55
TPM1-228ENST00000560975 CECR2Q9BXF3 1484 aa24.73■■□□□ 1.55
TPM1-228ENST00000560975 MROH2BQ7Z745 1585 aa24.65■■□□□ 1.54
TPM1-228ENST00000560975 WRNQ14191 1432 aaPredicted RBP eCLIP24.59■■□□□ 1.53
TPM1-228ENST00000560975 CEP162Q5TB80 1403 aa24.59■■□□□ 1.53
TPM1-228ENST00000560975 WIZO95785 1651 aa24.58■■□□□ 1.52
TPM1-228ENST00000560975 HNRNPUL2Q1KMD3 747 aaKnown RBP24.5■■□□□ 1.51
TPM1-228ENST00000560975 UBTFP17480 764 aaKnown RBP24.46■■□□□ 1.51
TPM1-228ENST00000560975 CCDC88BA6NC98 1476 aa24.45■■□□□ 1.5
TPM1-228ENST00000560975 ABCC8Q09428 1581 aa24.43■■□□□ 1.5
TPM1-228ENST00000560975 SOGA1O94964 1423 aa24.39■■□□□ 1.49
TPM1-228ENST00000560975 TNIKQ9UKE5 1360 aa24.39■■□□□ 1.49
TPM1-228ENST00000560975 EIF4G1Q04637 1599 aaKnown RBP24.38■■□□□ 1.49
TPM1-228ENST00000560975 BAZ1AQ9NRL2 1556 aaPredicted RBP24.3■■□□□ 1.48
TPM1-228ENST00000560975 CSRNP3Q8WYN3 585 aa24.29■■□□□ 1.48
TPM1-228ENST00000560975 SUPT16HQ9Y5B9 1047 aaKnown RBP24.28■■□□□ 1.48
TPM1-228ENST00000560975 RUSC2Q8N2Y8 1516 aa24.25■■□□□ 1.47
TPM1-228ENST00000560975 TSHZ2Q9NRE2 1034 aa24.13■■□□□ 1.45
TPM1-228ENST00000560975 GOLGA3Q08378 1498 aa24.1■■□□□ 1.45
TPM1-228ENST00000560975 ANP32EQ9BTT0 268 aa24.07■■□□□ 1.44
TPM1-228ENST00000560975 NACADO15069 1562 aa24.07■■□□□ 1.44
TPM1-228ENST00000560975 EEA1Q15075 1411 aa24.07■■□□□ 1.44
TPM1-228ENST00000560975 CLSPNQ9HAW4 1339 aa24.06■■□□□ 1.44
TPM1-228ENST00000560975 RANGAP1P46060 587 aaPredicted RBP24.05■■□□□ 1.44
TPM1-228ENST00000560975 APLP2Q06481 763 aa24.03■■□□□ 1.44
TPM1-228ENST00000560975 TOP2AP11388 1531 aaKnown RBP24.02■■□□□ 1.44
TPM1-228ENST00000560975 SMARCA2P51531 1590 aa23.98■■□□□ 1.43
TPM1-228ENST00000560975 CLIP1P30622 1438 aa23.96■■□□□ 1.43
TPM1-228ENST00000560975 BCL11AQ9H165 835 aa23.93■■□□□ 1.42
TPM1-228ENST00000560975 BCANQ96GW7 911 aa23.93■■□□□ 1.42
TPM1-228ENST00000560975 VPS8Q8N3P4 1428 aa23.88■■□□□ 1.41
TPM1-228ENST00000560975 DHX57Q6P158 1386 aaKnown RBP23.86■■□□□ 1.41
TPM1-228ENST00000560975 CEP164Q9UPV0 1460 aa23.85■■□□□ 1.41
TPM1-228ENST00000560975 KCNH8Q96L42 1107 aa23.85■■□□□ 1.41
TPM1-228ENST00000560975 SMARCA4P51532 1647 aa23.8■■□□□ 1.4
TPM1-228ENST00000560975 FKBP8Q14318 412 aa23.73■■□□□ 1.39
TPM1-228ENST00000560975 KIF21BO75037 1637 aa23.71■■□□□ 1.39
TPM1-228ENST00000560975 RAPGEF2Q9Y4G8 1499 aa23.7■■□□□ 1.38
TPM1-228ENST00000560975 SYNJ1O43426 1573 aa23.64■■□□□ 1.37
TPM1-228ENST00000560975 KANK4Q5T7N3 995 aaPredicted RBP23.62■■□□□ 1.37
TPM1-228ENST00000560975 ITGAEP38570 1179 aa23.62■■□□□ 1.37
TPM1-228ENST00000560975 RBM19Q9Y4C8 960 aaKnown RBP23.58■■□□□ 1.37
TPM1-228ENST00000560975 BAZ1BQ9UIG0 1483 aaKnown RBP23.58■■□□□ 1.37
TPM1-228ENST00000560975 DDX10Q13206 875 aaKnown RBP23.54■■□□□ 1.36
TPM1-228ENST00000560975 NEFLP07196 543 aa23.51■■□□□ 1.35
TPM1-228ENST00000560975 TRIM52Q96A61 297 aa23.46■■□□□ 1.35
TPM1-228ENST00000560975 ARAP1Q96P48 1450 aa23.41■■□□□ 1.34
TPM1-228ENST00000560975 RRBP1Q9P2E9 1410 aaKnown RBP23.4■■□□□ 1.34
TPM1-228ENST00000560975 HIRIP3Q9BW71 556 aaPredicted RBP23.38■■□□□ 1.33
TPM1-228ENST00000560975 PABPN1Q86U42 306 aaKnown RBP eCLIP23.38■■□□□ 1.33
TPM1-228ENST00000560975 CCNB3Q8WWL7 1395 aa23.37■■□□□ 1.33
TPM1-228ENST00000560975 MSH5O43196 834 aa23.36■■□□□ 1.33
TPM1-228ENST00000560975 RAB3GAP2Q9H2M9 1393 aa23.34■■□□□ 1.33
TPM1-228ENST00000560975 SIN3AQ96ST3 1273 aa23.33■■□□□ 1.33
TPM1-228ENST00000560975 CUX2O14529 1486 aa23.31■■□□□ 1.32
TPM1-228ENST00000560975 UNC13AQ9UPW8 1703 aa23.29■■□□□ 1.32
TPM1-228ENST00000560975 MAPKBP1O60336 1514 aa23.28■■□□□ 1.32
TPM1-228ENST00000560975 PPP1R15AO75807 674 aaPredicted RBP23.27■■□□□ 1.32
TPM1-228ENST00000560975 WDR97A6NE52 1622 aa23.26■■□□□ 1.31
TPM1-228ENST00000560975 ANP32CO43423 234 aa23.24■■□□□ 1.31
TPM1-228ENST00000560975 ERICH6Q7L0X2 663 aa23.21■■□□□ 1.31
TPM1-228ENST00000560975 IRX6P78412 446 aaPredicted RBP23.2■■□□□ 1.3
TPM1-228ENST00000560975 PRXQ9BXM0 1461 aa23.2■■□□□ 1.3
TPM1-228ENST00000560975 CCER2I3L3R5 266 aa23.18■■□□□ 1.3
TPM1-228ENST00000560975 ERICH3Q5RHP9 1530 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms