RNA–Protein interactions for RNA: ENST00000559193.5

SPG11-215, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 2,579 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-215ENST00000559193 L3MBTL2Q969R5 705 aa23.15■■□□□ 1.3
SPG11-215ENST00000559193 IFT140Q96RY7 1462 aa23.15■■□□□ 1.3
SPG11-215ENST00000559193 ABCC5O15440 1437 aa23.14■■□□□ 1.3
SPG11-215ENST00000559193 ANKRD30BQ9BXX2 1392 aa23.12■■□□□ 1.29
SPG11-215ENST00000559193 CNTLNQ9NXG0 1405 aa23.11■■□□□ 1.29
SPG11-215ENST00000559193 RPRD2Q5VT52 1461 aaKnown RBP23.11■■□□□ 1.29
SPG11-215ENST00000559193 RAPGEF6Q8TEU7 1601 aa23.11■■□□□ 1.29
SPG11-215ENST00000559193 TEX14Q8IWB6 1497 aa23.1■■□□□ 1.29
SPG11-215ENST00000559193 ZNF644Q9H582 1327 aaPredicted RBP23.09■■□□□ 1.29
SPG11-215ENST00000559193 HNRNPUQ00839 825 aaKnown RBP eCLIP23.08■■□□□ 1.29
SPG11-215ENST00000559193 NCOA1Q15788 1441 aa23.08■■□□□ 1.29
SPG11-215ENST00000559193 GRIN2AQ12879 1464 aa23.07■■□□□ 1.28
SPG11-215ENST00000559193 C11orf95C9JLR9 678 aaPredicted RBP23.05■■□□□ 1.28
SPG11-215ENST00000559193 CCDC7Q96M83 1385 aa23.05■■□□□ 1.28
SPG11-215ENST00000559193 NBPF8Q3BBV2 869 aa23.04■■□□□ 1.28
SPG11-215ENST00000559193 EIF4G3O43432 1585 aaKnown RBP23.03■■□□□ 1.28
SPG11-215ENST00000559193 TROQ12816 1431 aaPredicted RBP22.99■■□□□ 1.27
SPG11-215ENST00000559193 PRG4Q92954 1404 aaPredicted RBP22.99■■□□□ 1.27
SPG11-215ENST00000559193 CCDC184Q52MB2 194 aa22.99■■□□□ 1.27
SPG11-215ENST00000559193 SLC4A1APQ9BWU0 796 aaKnown RBP22.99■■□□□ 1.27
SPG11-215ENST00000559193 CDK11AQ9UQ88 783 aaPredicted RBP22.99■■□□□ 1.27
SPG11-215ENST00000559193 PZPP20742 1482 aa22.99■■□□□ 1.27
SPG11-215ENST00000559193 CAMSAP2Q08AD1 1489 aa22.99■■□□□ 1.27
SPG11-215ENST00000559193 SPATA31E1Q6ZUB1 1445 aa22.98■■□□□ 1.27
SPG11-215ENST00000559193 PRKRIP1Q9H875 184 aaPredicted RBP22.96■■□□□ 1.27
SPG11-215ENST00000559193 ITSN2Q9NZM3 1697 aa22.95■■□□□ 1.26
SPG11-215ENST00000559193 ADGBQ8N7X0 1667 aa22.94■■□□□ 1.26
SPG11-215ENST00000559193 POLR1AO95602 1720 aaPredicted RBP22.94■■□□□ 1.26
SPG11-215ENST00000559193 ANP32EQ9BTT0 268 aa22.94■■□□□ 1.26
SPG11-215ENST00000559193 PLB1Q6P1J6 1458 aa22.93■■□□□ 1.26
SPG11-215ENST00000559193 RBM19Q9Y4C8 960 aaKnown RBP22.93■■□□□ 1.26
SPG11-215ENST00000559193 GPATCH8Q9UKJ3 1502 aaKnown RBP22.93■■□□□ 1.26
SPG11-215ENST00000559193 KIF14Q15058 1648 aa22.93■■□□□ 1.26
SPG11-215ENST00000559193 ADCY10Q96PN6 1610 aa22.93■■□□□ 1.26
SPG11-215ENST00000559193 CEP170Q5SW79 1584 aa22.92■■□□□ 1.26
SPG11-215ENST00000559193 KIF7Q2M1P5 1343 aa22.92■■□□□ 1.26
SPG11-215ENST00000559193 CFDP1Q9UEE9 299 aaPredicted RBP22.91■■□□□ 1.26
SPG11-215ENST00000559193 ADGRL2O95490 1459 aa22.91■■□□□ 1.26
SPG11-215ENST00000559193 CROCC2H7BZ55 1655 aa22.9■■□□□ 1.26
SPG11-215ENST00000559193 MBD5Q9P267 1494 aa22.9■■□□□ 1.26
SPG11-215ENST00000559193 MAGI1Q96QZ7 1491 aaPredicted RBP22.9■■□□□ 1.26
SPG11-215ENST00000559193 IRX6P78412 446 aaPredicted RBP22.88■■□□□ 1.25
SPG11-215ENST00000559193 KIAA1107Q9UPP5 1409 aa22.86■■□□□ 1.25
SPG11-215ENST00000559193 MRS2Q9HD23 443 aa22.86■■□□□ 1.25
SPG11-215ENST00000559193 SYNJ2O15056 1496 aa22.86■■□□□ 1.25
SPG11-215ENST00000559193 FAM9BQ8IZU0 186 aa22.84■■□□□ 1.25
SPG11-215ENST00000559193 ZNF777Q9ULD5 760 aaPredicted RBP22.82■■□□□ 1.24
SPG11-215ENST00000559193 CHMP7Q8WUX9 453 aaPredicted RBP22.82■■□□□ 1.24
SPG11-215ENST00000559193 ZBED9Q6R2W3 1325 aa22.81■■□□□ 1.24
SPG11-215ENST00000559193 ANKRD30AQ9BXX3 1397 aa22.81■■□□□ 1.24
SPG11-215ENST00000559193 CARMIL2Q6F5E8 1435 aa22.79■■□□□ 1.24
SPG11-215ENST00000559193 NUP160Q12769 1436 aa22.78■■□□□ 1.24
SPG11-215ENST00000559193 BCORL1Q5H9F3 1711 aa22.78■■□□□ 1.24
SPG11-215ENST00000559193 PKD2Q13563 968 aa22.78■■□□□ 1.24
SPG11-215ENST00000559193 ERICH6BQ5W0A0 696 aa22.78■■□□□ 1.24
SPG11-215ENST00000559193 DHX29Q7Z478 1369 aaKnown RBP22.77■■□□□ 1.24
SPG11-215ENST00000559193 USP47Q96K76 1375 aa22.77■■□□□ 1.24
SPG11-215ENST00000559193 ANKRD50Q9ULJ7 1429 aa22.77■■□□□ 1.24
SPG11-215ENST00000559193 ERCC6Q03468 1493 aa22.76■■□□□ 1.23
SPG11-215ENST00000559193 CDC42BPAQ5VT25 1732 aa22.76■■□□□ 1.23
SPG11-215ENST00000559193 KDM5CP41229 1560 aa22.75■■□□□ 1.23
SPG11-215ENST00000559193 ABCC10Q5T3U5 1492 aa22.75■■□□□ 1.23
SPG11-215ENST00000559193 ABCA8O94911 1581 aa22.74■■□□□ 1.23
SPG11-215ENST00000559193 JPH4Q96JJ6 628 aa22.74■■□□□ 1.23
SPG11-215ENST00000559193 SHANK2Q9UPX8 1470 aa22.74■■□□□ 1.23
SPG11-215ENST00000559193 FBLN2P98095 1184 aa22.73■■□□□ 1.23
SPG11-215ENST00000559193 ZNF326Q5BKZ1 582 aaKnown RBP22.72■■□□□ 1.23
SPG11-215ENST00000559193 PPP4R2Q9NY27 417 aa22.71■■□□□ 1.23
SPG11-215ENST00000559193 C9orf84Q5VXU9 1444 aa22.71■■□□□ 1.23
SPG11-215ENST00000559193 UHRF1BP1Q6BDS2 1440 aa22.71■■□□□ 1.23
SPG11-215ENST00000559193 ATP10BO94823 1461 aa22.69■■□□□ 1.22
SPG11-215ENST00000559193 RALGAPBQ86X10 1494 aa22.69■■□□□ 1.22
SPG11-215ENST00000559193 KDM5DQ9BY66 1539 aa22.69■■□□□ 1.22
SPG11-215ENST00000559193 PLEKHD1A6NEE1 506 aa22.67■■□□□ 1.22
SPG11-215ENST00000559193 NUP155O75694 1391 aa22.67■■□□□ 1.22
SPG11-215ENST00000559193 ARHGEF12Q9NZN5 1544 aa22.66■■□□□ 1.22
SPG11-215ENST00000559193 ARID4BQ4LE39 1312 aaPredicted RBP22.66■■□□□ 1.22
SPG11-215ENST00000559193 POLR3GLQ9BT43 218 aa22.64■■□□□ 1.21
SPG11-215ENST00000559193 MSH5O43196 834 aa22.63■■□□□ 1.21
SPG11-215ENST00000559193 PTPRGP23470 1445 aa22.61■■□□□ 1.21
SPG11-215ENST00000559193 FANCIQ9NVI1 1328 aa22.61■■□□□ 1.21
SPG11-215ENST00000559193 SMG6Q86US8 1419 aaKnown RBP22.61■■□□□ 1.21
SPG11-215ENST00000559193 ARHGEF5Q12774 1597 aa22.6■■□□□ 1.21
SPG11-215ENST00000559193 CNGB1Q14028 1251 aaPredicted RBP22.6■■□□□ 1.21
SPG11-215ENST00000559193 KIF15Q9NS87 1388 aa22.59■■□□□ 1.21
SPG11-215ENST00000559193 ROCK2O75116 1388 aaKnown RBP22.59■■□□□ 1.21
SPG11-215ENST00000559193 B4GALNT3Q6L9W6 998 aa22.58■■□□□ 1.21
SPG11-215ENST00000559193 CARD11Q9BXL7 1154 aa22.58■■□□□ 1.21
SPG11-215ENST00000559193 TSPY4P0CV99 314 aa22.57■■□□□ 1.2
SPG11-215ENST00000559193 TSPY10P0CW01 314 aa22.57■■□□□ 1.2
SPG11-215ENST00000559193 HNRNPMP52272 730 aaKnown RBP eCLIP22.55■■□□□ 1.2
SPG11-215ENST00000559193 SAMD9LQ8IVG5 1584 aa22.53■■□□□ 1.2
SPG11-215ENST00000559193 NUDCQ9Y266 331 aa22.53■■□□□ 1.2
SPG11-215ENST00000559193 CCDC141Q6ZP82 1450 aa22.52■■□□□ 1.2
SPG11-215ENST00000559193 PNISRQ8TF01 805 aaKnown RBP22.51■■□□□ 1.19
SPG11-215ENST00000559193 KDM2AQ9Y2K7 1162 aa22.51■■□□□ 1.19
SPG11-215ENST00000559193 PREX2Q70Z35 1606 aa22.51■■□□□ 1.19
SPG11-215ENST00000559193 FAM135AQ9P2D6 1515 aa22.5■■□□□ 1.19
SPG11-215ENST00000559193 ST20-MTHFSA0A0A6YYL1 179 aa22.5■■□□□ 1.19
SPG11-215ENST00000559193 DCAF11Q8TEB1 546 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms