RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 C11orf95C9JLR9 678 aaPredicted RBP17.11■□□□□ 0.33
LDLR-205ENST00000557933 ABCA8O94911 1581 aa17.09■□□□□ 0.33
LDLR-205ENST00000557933 NBR1Q14596 966 aa17.07■□□□□ 0.32
LDLR-205ENST00000557933 JPH4Q96JJ6 628 aa17.07■□□□□ 0.32
LDLR-205ENST00000557933 MRS2Q9HD23 443 aa17.07■□□□□ 0.32
LDLR-205ENST00000557933 ZNF326Q5BKZ1 582 aaKnown RBP17.07■□□□□ 0.32
LDLR-205ENST00000557933 FGD6Q6ZV73 1430 aa17.04■□□□□ 0.32
LDLR-205ENST00000557933 PRG4Q92954 1404 aaPredicted RBP17.04■□□□□ 0.32
LDLR-205ENST00000557933 EHBP1L1Q8N3D4 1523 aa17.03■□□□□ 0.32
LDLR-205ENST00000557933 FBLN2P98095 1184 aa17.03■□□□□ 0.32
LDLR-205ENST00000557933 L3MBTL2Q969R5 705 aa17.02■□□□□ 0.31
LDLR-205ENST00000557933 EPRSP07814 1512 aaKnown RBP17.02■□□□□ 0.31
LDLR-205ENST00000557933 TIMELESSQ9UNS1 1208 aa17.01■□□□□ 0.31
LDLR-205ENST00000557933 ARHGEF11O15085 1522 aa17■□□□□ 0.31
LDLR-205ENST00000557933 NUP153P49790 1475 aaKnown RBP17■□□□□ 0.31
LDLR-205ENST00000557933 EIF4G2P78344 907 aaKnown RBP eCLIP16.99■□□□□ 0.31
LDLR-205ENST00000557933 UHRF1BP1LA0JNW5 1464 aa16.99■□□□□ 0.31
LDLR-205ENST00000557933 ADCY10Q96PN6 1610 aa16.99■□□□□ 0.31
LDLR-205ENST00000557933 SUPT6HQ7KZ85 1726 aaKnown RBP16.97■□□□□ 0.31
LDLR-205ENST00000557933 NAIPQ13075 1403 aa16.96■□□□□ 0.31
LDLR-205ENST00000557933 SALL2Q9Y467 1007 aaPredicted RBP16.96■□□□□ 0.31
LDLR-205ENST00000557933 UACAQ9BZF9 1416 aa16.95■□□□□ 0.3
LDLR-205ENST00000557933 PAK3O75914 559 aaPredicted RBP16.95■□□□□ 0.3
LDLR-205ENST00000557933 NBPF8Q3BBV2 869 aa16.94■□□□□ 0.3
LDLR-205ENST00000557933 PRKRIP1Q9H875 184 aaPredicted RBP16.94■□□□□ 0.3
LDLR-205ENST00000557933 ABCC2Q92887 1545 aa16.94■□□□□ 0.3
LDLR-205ENST00000557933 PPP4R2Q9NY27 417 aa16.93■□□□□ 0.3
LDLR-205ENST00000557933 ERCC6L2Q5T890 1561 aa16.93■□□□□ 0.3
LDLR-205ENST00000557933 HFM1A2PYH4 1435 aa16.91■□□□□ 0.3
LDLR-205ENST00000557933 MPHOSPH9Q99550 1183 aa16.91■□□□□ 0.3
LDLR-205ENST00000557933 PTPRGP23470 1445 aa16.91■□□□□ 0.3
LDLR-205ENST00000557933 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.91■□□□□ 0.3
LDLR-205ENST00000557933 NCOA2Q15596 1464 aa16.91■□□□□ 0.3
LDLR-205ENST00000557933 MAGI3Q5TCQ9 1506 aa16.91■□□□□ 0.3
LDLR-205ENST00000557933 PLB1Q6P1J6 1458 aa16.9■□□□□ 0.3
LDLR-205ENST00000557933 FANCIQ9NVI1 1328 aa16.9■□□□□ 0.3
LDLR-205ENST00000557933 AKNAQ7Z591 1439 aa16.89■□□□□ 0.29
LDLR-205ENST00000557933 ZNF644Q9H582 1327 aaPredicted RBP16.89■□□□□ 0.29
LDLR-205ENST00000557933 PTPN23Q9H3S7 1636 aa16.89■□□□□ 0.29
LDLR-205ENST00000557933 DEKP35659 375 aaKnown RBP16.88■□□□□ 0.29
LDLR-205ENST00000557933 OSCARQ8IYS5 282 aa16.88■□□□□ 0.29
LDLR-205ENST00000557933 CDK13Q14004 1512 aaKnown RBP16.88■□□□□ 0.29
LDLR-205ENST00000557933 NPM2Q86SE8 214 aaKnown RBP16.86■□□□□ 0.29
LDLR-205ENST00000557933 KDM5BQ9UGL1 1544 aa16.86■□□□□ 0.29
LDLR-205ENST00000557933 MYOM3Q5VTT5 1437 aa16.85■□□□□ 0.29
LDLR-205ENST00000557933 KIF7Q2M1P5 1343 aa16.85■□□□□ 0.29
LDLR-205ENST00000557933 KDM6BO15054 1643 aa16.84■□□□□ 0.29
LDLR-205ENST00000557933 ATP10BO94823 1461 aa16.84■□□□□ 0.29
LDLR-205ENST00000557933 SLC4A1APQ9BWU0 796 aaKnown RBP16.83■□□□□ 0.29
LDLR-205ENST00000557933 TROQ12816 1431 aaPredicted RBP16.83■□□□□ 0.29
LDLR-205ENST00000557933 CCDC7Q96M83 1385 aa16.83■□□□□ 0.28
LDLR-205ENST00000557933 ITSN2Q9NZM3 1697 aa16.83■□□□□ 0.28
LDLR-205ENST00000557933 DENND4BO75064 1496 aaPredicted RBP16.82■□□□□ 0.28
LDLR-205ENST00000557933 CNTLNQ9NXG0 1405 aa16.82■□□□□ 0.28
LDLR-205ENST00000557933 CCDC136Q96JN2 1154 aa16.82■□□□□ 0.28
LDLR-205ENST00000557933 ZNF777Q9ULD5 760 aaPredicted RBP16.82■□□□□ 0.28
LDLR-205ENST00000557933 ZCCHC11Q5TAX3 1644 aaKnown RBP16.81■□□□□ 0.28
LDLR-205ENST00000557933 TCOF1Q13428 1488 aaKnown RBP16.81■□□□□ 0.28
LDLR-205ENST00000557933 KIF14Q15058 1648 aa16.8■□□□□ 0.28
LDLR-205ENST00000557933 MIA2Q96PC5 1412 aa16.79■□□□□ 0.28
LDLR-205ENST00000557933 SKAP1Q86WV1 359 aa16.79■□□□□ 0.28
LDLR-205ENST00000557933 NOP58Q9Y2X3 529 aaKnown RBP16.78■□□□□ 0.28
LDLR-205ENST00000557933 ZBED9Q6R2W3 1325 aa16.77■□□□□ 0.28
LDLR-205ENST00000557933 KDM2AQ9Y2K7 1162 aa16.76■□□□□ 0.27
LDLR-205ENST00000557933 ABCC10Q5T3U5 1492 aa16.74■□□□□ 0.27
LDLR-205ENST00000557933 RTN4Q9NQC3 1192 aaKnown RBP16.74■□□□□ 0.27
LDLR-205ENST00000557933 CDC42BPAQ5VT25 1732 aa16.72■□□□□ 0.27
LDLR-205ENST00000557933 LAS1LQ9Y4W2 734 aaKnown RBP16.71■□□□□ 0.27
LDLR-205ENST00000557933 NCOA1Q15788 1441 aa16.7■□□□□ 0.26
LDLR-205ENST00000557933 ARAP3Q8WWN8 1544 aa16.7■□□□□ 0.26
LDLR-205ENST00000557933 PREX2Q70Z35 1606 aa16.7■□□□□ 0.26
LDLR-205ENST00000557933 TMC1Q8TDI8 760 aa16.69■□□□□ 0.26
LDLR-205ENST00000557933 RIMBP3CA6NJZ7 1639 aa16.69■□□□□ 0.26
LDLR-205ENST00000557933 RIMBP3BA6NNM3 1639 aa16.69■□□□□ 0.26
LDLR-205ENST00000557933 RIMBP3Q9UFD9 1639 aa16.69■□□□□ 0.26
LDLR-205ENST00000557933 ANP32AP39687 249 aaKnown RBP16.66■□□□□ 0.26
LDLR-205ENST00000557933 NUDCQ9Y266 331 aa16.66■□□□□ 0.26
LDLR-205ENST00000557933 GPATCH8Q9UKJ3 1502 aaKnown RBP16.65■□□□□ 0.26
LDLR-205ENST00000557933 MYO5CQ9NQX4 1742 aa16.65■□□□□ 0.26
LDLR-205ENST00000557933 EXOC6Q8TAG9 804 aa16.65■□□□□ 0.26
LDLR-205ENST00000557933 CROCC2H7BZ55 1655 aa16.64■□□□□ 0.25
LDLR-205ENST00000557933 DNMT1P26358 1616 aaKnown RBP16.64■□□□□ 0.25
LDLR-205ENST00000557933 PLIN1O60240 522 aa16.64■□□□□ 0.25
LDLR-205ENST00000557933 ANKRD30BQ9BXX2 1392 aa16.64■□□□□ 0.25
LDLR-205ENST00000557933 ABCA9Q8IUA7 1624 aa16.64■□□□□ 0.25
LDLR-205ENST00000557933 PLEKHD1A6NEE1 506 aa16.63■□□□□ 0.25
LDLR-205ENST00000557933 PKD2Q13563 968 aa16.63■□□□□ 0.25
LDLR-205ENST00000557933 ZBTB47Q9UFB7 747 aaPredicted RBP16.63■□□□□ 0.25
LDLR-205ENST00000557933 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.63■□□□□ 0.255e-12■□□□□ 9.5
LDLR-205ENST00000557933 CDC42BPBQ9Y5S2 1711 aa16.63■□□□□ 0.25
LDLR-205ENST00000557933 WDR7Q9Y4E6 1490 aa16.63■□□□□ 0.25
LDLR-205ENST00000557933 ARHGEF5Q12774 1597 aa16.61■□□□□ 0.25
LDLR-205ENST00000557933 TTC37Q6PGP7 1564 aa16.61■□□□□ 0.25
LDLR-205ENST00000557933 USP47Q96K76 1375 aa16.61■□□□□ 0.25
LDLR-205ENST00000557933 RTL5Q5HYW3 569 aaPredicted RBP16.61■□□□□ 0.25
LDLR-205ENST00000557933 ERICH6BQ5W0A0 696 aa16.6■□□□□ 0.25
LDLR-205ENST00000557933 IL27Q8NEV9 243 aa16.6■□□□□ 0.25
LDLR-205ENST00000557933 GCC2Q8IWJ2 1684 aa16.6■□□□□ 0.25
LDLR-205ENST00000557933 CARD11Q9BXL7 1154 aa16.59■□□□□ 0.25
LDLR-205ENST00000557933 CDCA7LQ96GN5 454 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms