RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ARHGAP5Q13017 1502 aa21.37■■□□□ 1.01
SHMT2-228ENST00000557302 LRRC9Q6ZRR7 1453 aa21.35■■□□□ 1.01
SHMT2-228ENST00000557302 CCNB3Q8WWL7 1395 aa21.34■■□□□ 1.01
SHMT2-228ENST00000557302 PREX2Q70Z35 1606 aa21.33■■□□□ 1.01
SHMT2-228ENST00000557302 ADGRL1O94910 1474 aa21.32■■□□□ 1
SHMT2-228ENST00000557302 DENND4BO75064 1496 aaPredicted RBP21.32■■□□□ 1
SHMT2-228ENST00000557302 GPATCH8Q9UKJ3 1502 aaKnown RBP21.31■■□□□ 1
SHMT2-228ENST00000557302 RAPGEF3O95398 923 aa21.31■■□□□ 1
SHMT2-228ENST00000557302 KANK4Q5T7N3 995 aaPredicted RBP21.31■■□□□ 1
SHMT2-228ENST00000557302 SUPT6HQ7KZ85 1726 aaKnown RBP21.3■■□□□ 1
SHMT2-228ENST00000557302 NCOA2Q15596 1464 aa21.3■■□□□ 1
SHMT2-228ENST00000557302 SCAPERQ9BY12 1400 aa21.29■■□□□ 1
SHMT2-228ENST00000557302 CDC42BPAQ5VT25 1732 aa21.29■■□□□ 1
SHMT2-228ENST00000557302 CDC42BPBQ9Y5S2 1711 aa21.29■■□□□ 1
SHMT2-228ENST00000557302 CFDP1Q9UEE9 299 aaPredicted RBP21.27■■□□□ 1
SHMT2-228ENST00000557302 FRMPD1Q5SYB0 1578 aa21.25■□□□□ 0.99
SHMT2-228ENST00000557302 ZNF777Q9ULD5 760 aaPredicted RBP21.25■□□□□ 0.99
SHMT2-228ENST00000557302 POGZQ7Z3K3 1410 aa21.24■□□□□ 0.99
SHMT2-228ENST00000557302 ITSN2Q9NZM3 1697 aa21.22■□□□□ 0.99
SHMT2-228ENST00000557302 RICTORQ6R327 1708 aa21.22■□□□□ 0.99
SHMT2-228ENST00000557302 ABCC1P33527 1531 aa21.21■□□□□ 0.99
SHMT2-228ENST00000557302 SAMD9LQ8IVG5 1584 aa21.19■□□□□ 0.98
SHMT2-228ENST00000557302 ZNF518AQ6AHZ1 1483 aa21.19■□□□□ 0.98
SHMT2-228ENST00000557302 PLEKHH2Q8IVE3 1493 aa21.19■□□□□ 0.98
SHMT2-228ENST00000557302 ZMYM4Q5VZL5 1548 aa21.19■□□□□ 0.98
SHMT2-228ENST00000557302 ARHGEF12Q9NZN5 1544 aa21.18■□□□□ 0.98
SHMT2-228ENST00000557302 KIAA1107Q9UPP5 1409 aa21.17■□□□□ 0.98
SHMT2-228ENST00000557302 AFAP1Q8N556 730 aa21.16■□□□□ 0.98
SHMT2-228ENST00000557302 SYCP2Q9BX26 1530 aa21.15■□□□□ 0.98
SHMT2-228ENST00000557302 MAGI2Q86UL8 1455 aa21.15■□□□□ 0.98
SHMT2-228ENST00000557302 TRAPPC8Q9Y2L5 1435 aa21.15■□□□□ 0.98
SHMT2-228ENST00000557302 KDM4FA0A1W2PPD8 638 aa21.15■□□□□ 0.98
SHMT2-228ENST00000557302 ZNF644Q9H582 1327 aaPredicted RBP21.14■□□□□ 0.97
SHMT2-228ENST00000557302 MYOM3Q5VTT5 1437 aa21.13■□□□□ 0.97
SHMT2-228ENST00000557302 HNRNPMP52272 730 aaKnown RBP eCLIP21.13■□□□□ 0.97
SHMT2-228ENST00000557302 KDM5CP41229 1560 aa21.13■□□□□ 0.97
SHMT2-228ENST00000557302 ZFYVE16Q7Z3T8 1539 aa21.13■□□□□ 0.97
SHMT2-228ENST00000557302 ARHGEF40Q8TER5 1519 aa21.13■□□□□ 0.97
SHMT2-228ENST00000557302 YEATS2Q9ULM3 1422 aa21.11■□□□□ 0.97
SHMT2-228ENST00000557302 CAMSAP2Q08AD1 1489 aa21.1■□□□□ 0.97
SHMT2-228ENST00000557302 MYT1LQ9UL68 1186 aa21.1■□□□□ 0.97
SHMT2-228ENST00000557302 MIA2Q96PC5 1412 aa21.1■□□□□ 0.97
SHMT2-228ENST00000557302 MLH3Q9UHC1 1453 aa21.07■□□□□ 0.96
SHMT2-228ENST00000557302 HECW2Q9P2P5 1572 aa21.07■□□□□ 0.96
SHMT2-228ENST00000557302 MBD5Q9P267 1494 aa21.07■□□□□ 0.96
SHMT2-228ENST00000557302 SPAG9O60271 1321 aaKnown RBP21.05■□□□□ 0.96
SHMT2-228ENST00000557302 ATP10AO60312 1499 aa21.03■□□□□ 0.96
SHMT2-228ENST00000557302 RSPH4AQ5TD94 716 aa21.03■□□□□ 0.96
SHMT2-228ENST00000557302 FGD6Q6ZV73 1430 aa21.03■□□□□ 0.96
SHMT2-228ENST00000557302 ARID4BQ4LE39 1312 aaPredicted RBP21.03■□□□□ 0.96
SHMT2-228ENST00000557302 CCDC141Q6ZP82 1450 aa21.02■□□□□ 0.96
SHMT2-228ENST00000557302 PPARGC1BQ86YN6 1023 aaKnown RBP21.01■□□□□ 0.95
SHMT2-228ENST00000557302 C9orf84Q5VXU9 1444 aa21.01■□□□□ 0.95
SHMT2-228ENST00000557302 DIP2CQ9Y2E4 1556 aa21■□□□□ 0.95
SHMT2-228ENST00000557302 ARHGEF5Q12774 1597 aa20.99■□□□□ 0.95
SHMT2-228ENST00000557302 KIDINS220Q9ULH0 1771 aa20.99■□□□□ 0.95
SHMT2-228ENST00000557302 PTPN23Q9H3S7 1636 aa20.99■□□□□ 0.95
SHMT2-228ENST00000557302 ATP7AQ04656 1500 aa20.99■□□□□ 0.95
SHMT2-228ENST00000557302 ABCA6Q8N139 1617 aa20.98■□□□□ 0.95
SHMT2-228ENST00000557302 INO80Q9ULG1 1556 aaPredicted RBP20.97■□□□□ 0.95
SHMT2-228ENST00000557302 TCOF1Q13428 1488 aaKnown RBP20.96■□□□□ 0.95
SHMT2-228ENST00000557302 TSPY4P0CV99 314 aa20.96■□□□□ 0.95
SHMT2-228ENST00000557302 TSPY10P0CW01 314 aa20.96■□□□□ 0.95
SHMT2-228ENST00000557302 RTEL1-TNFRSF6BF6WH68 1400 aa20.95■□□□□ 0.95
SHMT2-228ENST00000557302 REREQ9P2R6 1566 aa20.94■□□□□ 0.94
SHMT2-228ENST00000557302 SIGLEC1Q9BZZ2 1709 aa20.92■□□□□ 0.94
SHMT2-228ENST00000557302 FAM50AQ14320 339 aaKnown RBP20.9■□□□□ 0.94
SHMT2-228ENST00000557302 BCORL1Q5H9F3 1711 aa20.9■□□□□ 0.94
SHMT2-228ENST00000557302 A2MP01023 1474 aa20.88■□□□□ 0.93
SHMT2-228ENST00000557302 ABCC5O15440 1437 aa20.88■□□□□ 0.93
SHMT2-228ENST00000557302 MLECQ14165 292 aa20.88■□□□□ 0.93
SHMT2-228ENST00000557302 MAST1Q9Y2H9 1570 aa20.88■□□□□ 0.93
SHMT2-228ENST00000557302 AGLP35573 1532 aa20.88■□□□□ 0.93
SHMT2-228ENST00000557302 DAPK1P53355 1430 aa20.87■□□□□ 0.93
SHMT2-228ENST00000557302 ADAMTSL3P82987 1691 aa20.86■□□□□ 0.93
SHMT2-228ENST00000557302 DNMT1P26358 1616 aaKnown RBP20.86■□□□□ 0.93
SHMT2-228ENST00000557302 SHANK2Q9UPX8 1470 aa20.86■□□□□ 0.93
SHMT2-228ENST00000557302 ADGBQ8N7X0 1667 aa20.85■□□□□ 0.93
SHMT2-228ENST00000557302 PLXNC1O60486 1568 aa20.84■□□□□ 0.93
SHMT2-228ENST00000557302 DHX29Q7Z478 1369 aaKnown RBP20.84■□□□□ 0.93
SHMT2-228ENST00000557302 CROCC2H7BZ55 1655 aa20.82■□□□□ 0.92
SHMT2-228ENST00000557302 MADDQ8WXG6 1647 aa20.82■□□□□ 0.92
SHMT2-228ENST00000557302 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.79■□□□□ 0.92
SHMT2-228ENST00000557302 CHIC2Q9UKJ5 165 aa20.78■□□□□ 0.92
SHMT2-228ENST00000557302 RRBP1Q9P2E9 1410 aaKnown RBP20.78■□□□□ 0.92
SHMT2-228ENST00000557302 PTPRMP28827 1452 aa20.77■□□□□ 0.92
SHMT2-228ENST00000557302 ANKRD30AQ9BXX3 1397 aa20.76■□□□□ 0.91
SHMT2-228ENST00000557302 KIF15Q9NS87 1388 aa20.76■□□□□ 0.91
SHMT2-228ENST00000557302 FER1L4A9Z1Z3 1794 aa20.75■□□□□ 0.91
SHMT2-228ENST00000557302 RIMS1Q86UR5 1692 aaKnown RBP20.75■□□□□ 0.91
SHMT2-228ENST00000557302 ESF1Q9H501 851 aaKnown RBP20.75■□□□□ 0.91
SHMT2-228ENST00000557302 RRP7BPQ9NSQ0 103 aa20.75■□□□□ 0.91
SHMT2-228ENST00000557302 KIF3BO15066 747 aa20.74■□□□□ 0.91
SHMT2-228ENST00000557302 GGT6Q6P531 493 aa20.74■□□□□ 0.91
SHMT2-228ENST00000557302 DUOX2Q9NRD8 1548 aa20.73■□□□□ 0.91
SHMT2-228ENST00000557302 ADGRL2O95490 1459 aa20.73■□□□□ 0.91
SHMT2-228ENST00000557302 NCOA1Q15788 1441 aa20.72■□□□□ 0.91
SHMT2-228ENST00000557302 PTPRKQ15262 1439 aa20.71■□□□□ 0.91
SHMT2-228ENST00000557302 ITGAEP38570 1179 aa20.71■□□□□ 0.91
SHMT2-228ENST00000557302 CNTLNQ9NXG0 1405 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms