RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 NISCHQ9Y2I1 1504 aa32.76■■■□□ 2.83
SHMT2-228ENST00000557302 CCDC180Q9P1Z9 1646 aa29.05■■■□□ 2.24
SHMT2-228ENST00000557302 ABCC9O60706 1549 aa28.36■■■□□ 2.13
SHMT2-228ENST00000557302 DCAF8L2P0C7V8 631 aa27.36■■□□□ 1.97
SHMT2-228ENST00000557302 RB1CC1Q8TDY2 1594 aa27.32■■□□□ 1.96
SHMT2-228ENST00000557302 ZCCHC6Q5VYS8 1495 aaKnown RBP27.32■■□□□ 1.96
SHMT2-228ENST00000557302 NACADO15069 1562 aa27.31■■□□□ 1.96
SHMT2-228ENST00000557302 MYO15BQ96JP2 1530 aa27.18■■□□□ 1.94
SHMT2-228ENST00000557302 DCAF1Q9Y4B6 1507 aa27.11■■□□□ 1.93
SHMT2-228ENST00000557302 UNC13AQ9UPW8 1703 aa26.62■■□□□ 1.85
SHMT2-228ENST00000557302 SCRIBQ14160 1630 aa26.54■■□□□ 1.84
SHMT2-228ENST00000557302 PABPN1Q86U42 306 aaKnown RBP eCLIP26.53■■□□□ 1.84
SHMT2-228ENST00000557302 BICRAQ9NZM4 1560 aa26.46■■□□□ 1.83
SHMT2-228ENST00000557302 SHROOM4Q9ULL8 1493 aa26.23■■□□□ 1.79
SHMT2-228ENST00000557302 DNAJC5BQ9UF47 199 aa26.23■■□□□ 1.79
SHMT2-228ENST00000557302 EIF4G1Q04637 1599 aaKnown RBP25.78■■□□□ 1.72
SHMT2-228ENST00000557302 CC2D2AQ9P2K1 1620 aa25.63■■□□□ 1.69
SHMT2-228ENST00000557302 CECR2Q9BXF3 1484 aa25.5■■□□□ 1.67
SHMT2-228ENST00000557302 AEBP2Q6ZN18 517 aaPredicted RBP25.49■■□□□ 1.67
SHMT2-228ENST00000557302 BAZ1AQ9NRL2 1556 aaPredicted RBP25.39■■□□□ 1.65
SHMT2-228ENST00000557302 SMARCA4P51532 1647 aa25.38■■□□□ 1.65
SHMT2-228ENST00000557302 MROH2BQ7Z745 1585 aa25.24■■□□□ 1.63
SHMT2-228ENST00000557302 ATAD2BQ9ULI0 1458 aa25.24■■□□□ 1.63
SHMT2-228ENST00000557302 SMARCA2P51531 1590 aa25.22■■□□□ 1.63
SHMT2-228ENST00000557302 NCAPD3P42695 1498 aa25.21■■□□□ 1.63
SHMT2-228ENST00000557302 PEG3Q9GZU2 1588 aa25.13■■□□□ 1.61
SHMT2-228ENST00000557302 HMGXB3Q12766 1538 aa25.09■■□□□ 1.61
SHMT2-228ENST00000557302 BAZ1BQ9UIG0 1483 aaKnown RBP25.05■■□□□ 1.6
SHMT2-228ENST00000557302 RSF1Q96T23 1441 aaPredicted RBP25.01■■□□□ 1.59
SHMT2-228ENST00000557302 WIZO95785 1651 aa24.94■■□□□ 1.58
SHMT2-228ENST00000557302 TOP2AP11388 1531 aaKnown RBP24.72■■□□□ 1.55
SHMT2-228ENST00000557302 NESP48681 1621 aa24.56■■□□□ 1.52
SHMT2-228ENST00000557302 LAMC3Q9Y6N6 1575 aa24.51■■□□□ 1.51
SHMT2-228ENST00000557302 CADPSQ9ULU8 1353 aa24.49■■□□□ 1.51
SHMT2-228ENST00000557302 SUPT5HO00267 1087 aaKnown RBP24.48■■□□□ 1.51
SHMT2-228ENST00000557302 ERCC6Q03468 1493 aa24.45■■□□□ 1.51
SHMT2-228ENST00000557302 CCDC88BA6NC98 1476 aa24.44■■□□□ 1.5
SHMT2-228ENST00000557302 PDS5BQ9NTI5 1447 aa24.38■■□□□ 1.49
SHMT2-228ENST00000557302 CFTRP13569 1480 aa24.36■■□□□ 1.49
SHMT2-228ENST00000557302 CHIC1Q5VXU3 224 aa24.26■■□□□ 1.47
SHMT2-228ENST00000557302 CUX2O14529 1486 aa24.25■■□□□ 1.47
SHMT2-228ENST00000557302 KIF21AQ7Z4S6 1674 aa24.24■■□□□ 1.47
SHMT2-228ENST00000557302 FANCD2Q9BXW9 1451 aa24.21■■□□□ 1.47
SHMT2-228ENST00000557302 CEP164Q9UPV0 1460 aa24.17■■□□□ 1.46
SHMT2-228ENST00000557302 THOC2Q8NI27 1593 aaKnown RBP24.15■■□□□ 1.46
SHMT2-228ENST00000557302 PRDM2Q13029 1718 aa24.12■■□□□ 1.45
SHMT2-228ENST00000557302 MRC2Q9UBG0 1479 aa24.11■■□□□ 1.45
SHMT2-228ENST00000557302 DNAJC5Q9H3Z4 198 aa24.05■■□□□ 1.44
SHMT2-228ENST00000557302 WDR62O43379 1518 aa24.01■■□□□ 1.43
SHMT2-228ENST00000557302 URB2Q14146 1524 aaKnown RBP23.94■■□□□ 1.42
SHMT2-228ENST00000557302 ABCC8Q09428 1581 aa23.84■■□□□ 1.41
SHMT2-228ENST00000557302 TOPBP1Q92547 1522 aa23.82■■□□□ 1.4
SHMT2-228ENST00000557302 DNMBPQ6XZF7 1577 aa23.8■■□□□ 1.4
SHMT2-228ENST00000557302 CUX1P39880 1505 aa23.68■■□□□ 1.38
SHMT2-228ENST00000557302 IFT140Q96RY7 1462 aa23.66■■□□□ 1.38
SHMT2-228ENST00000557302 POLA1P09884 1462 aaPredicted RBP23.63■■□□□ 1.37
SHMT2-228ENST00000557302 FGD5Q6ZNL6 1462 aa23.59■■□□□ 1.37
SHMT2-228ENST00000557302 WRNQ14191 1432 aaPredicted RBP eCLIP23.59■■□□□ 1.37
SHMT2-228ENST00000557302 SOGA1O94964 1423 aa23.54■■□□□ 1.36
SHMT2-228ENST00000557302 TARBP1Q13395 1621 aaKnown RBP23.53■■□□□ 1.36
SHMT2-228ENST00000557302 RAD54L2Q9Y4B4 1467 aa23.53■■□□□ 1.36
SHMT2-228ENST00000557302 ZNF608Q9ULD9 1512 aaPredicted RBP23.53■■□□□ 1.36
SHMT2-228ENST00000557302 SYNJ1O43426 1573 aa23.49■■□□□ 1.35
SHMT2-228ENST00000557302 TOP2BQ02880 1626 aa23.49■■□□□ 1.35
SHMT2-228ENST00000557302 BIVM-ERCC5R4GMW8 1640 aa23.48■■□□□ 1.35
SHMT2-228ENST00000557302 EIF4G3O43432 1585 aaKnown RBP23.43■■□□□ 1.34
SHMT2-228ENST00000557302 AQRO60306 1485 aaKnown RBP eCLIP23.43■■□□□ 1.342e-8■■■■■ 27.6
SHMT2-228ENST00000557302 TDRD9Q8NDG6 1382 aaKnown RBP23.4■■□□□ 1.34
SHMT2-228ENST00000557302 ABCA10Q8WWZ4 1543 aa23.37■■□□□ 1.33
SHMT2-228ENST00000557302 WDR97A6NE52 1622 aa23.37■■□□□ 1.33
SHMT2-228ENST00000557302 GAPVD1Q14C86 1478 aa23.27■■□□□ 1.32
SHMT2-228ENST00000557302 GRIN2BQ13224 1484 aa23.26■■□□□ 1.31
SHMT2-228ENST00000557302 ABCA5Q8WWZ7 1642 aa23.24■■□□□ 1.31
SHMT2-228ENST00000557302 SNAPC4Q5SXM2 1469 aa23.21■■□□□ 1.31
SHMT2-228ENST00000557302 MAGI1Q96QZ7 1491 aaPredicted RBP23.18■■□□□ 1.3
SHMT2-228ENST00000557302 OSCARQ8IYS5 282 aa23.18■■□□□ 1.3
SHMT2-228ENST00000557302 PBRM1Q86U86 1689 aa23.17■■□□□ 1.3
SHMT2-228ENST00000557302 FBLN2P98095 1184 aa23.15■■□□□ 1.3
SHMT2-228ENST00000557302 TRIM41Q8WV44 630 aa23.12■■□□□ 1.29
SHMT2-228ENST00000557302 CHMP7Q8WUX9 453 aaPredicted RBP23.1■■□□□ 1.29
SHMT2-228ENST00000557302 KIF27Q86VH2 1401 aa23.09■■□□□ 1.29
SHMT2-228ENST00000557302 SYNJ2O15056 1496 aa23.09■■□□□ 1.29
SHMT2-228ENST00000557302 ERICH3Q5RHP9 1530 aa23.08■■□□□ 1.29
SHMT2-228ENST00000557302 CHD1O14646 1710 aa23.08■■□□□ 1.29
SHMT2-228ENST00000557302 ADAMTS12P58397 1594 aa23.03■■□□□ 1.28
SHMT2-228ENST00000557302 FHAD1B1AJZ9 1412 aa23.01■■□□□ 1.27
SHMT2-228ENST00000557302 IGF1RP08069 1367 aa22.98■■□□□ 1.27
SHMT2-228ENST00000557302 GRIN2AQ12879 1464 aa22.96■■□□□ 1.27
SHMT2-228ENST00000557302 CUL7Q14999 1698 aa22.88■■□□□ 1.25
SHMT2-228ENST00000557302 RUSC2Q8N2Y8 1516 aa22.87■■□□□ 1.25
SHMT2-228ENST00000557302 CLASP1Q7Z460 1538 aa22.87■■□□□ 1.25
SHMT2-228ENST00000557302 NUP160Q12769 1436 aa22.85■■□□□ 1.25
SHMT2-228ENST00000557302 CARMIL1Q5VZK9 1371 aa22.85■■□□□ 1.25
SHMT2-228ENST00000557302 CEP170Q5SW79 1584 aa22.81■■□□□ 1.24
SHMT2-228ENST00000557302 RIMBP3CA6NJZ7 1639 aa22.79■■□□□ 1.24
SHMT2-228ENST00000557302 RIMBP3BA6NNM3 1639 aa22.79■■□□□ 1.24
SHMT2-228ENST00000557302 RIMBP3Q9UFD9 1639 aa22.79■■□□□ 1.24
SHMT2-228ENST00000557302 ARHGEF11O15085 1522 aa22.78■■□□□ 1.24
SHMT2-228ENST00000557302 EEA1Q15075 1411 aa22.73■■□□□ 1.23
SHMT2-228ENST00000557302 RAPGEF2Q9Y4G8 1499 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms