RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 KDM2AQ9Y2K7 1162 aa11.77□□□□□ -0.53
SCFD1-221ENST00000556534 VSIG10Q8N0Z9 540 aa11.76□□□□□ -0.53
SCFD1-221ENST00000556534 KIF3CO14782 793 aa11.73□□□□□ -0.53
SCFD1-221ENST00000556534 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.72□□□□□ -0.53
SCFD1-221ENST00000556534 MFSD10Q14728 455 aa11.71□□□□□ -0.53
SCFD1-221ENST00000556534 GPHNQ9NQX3 736 aaPredicted RBP11.71□□□□□ -0.53
SCFD1-221ENST00000556534 C2orf72A6NCS6 295 aa11.7□□□□□ -0.54
SCFD1-221ENST00000556534 LHX8Q68G74 356 aa11.7□□□□□ -0.54
SCFD1-221ENST00000556534 MAMSTRQ6ZN01 415 aa11.7□□□□□ -0.54
SCFD1-221ENST00000556534 PDE4AP27815 886 aa11.69□□□□□ -0.54
SCFD1-221ENST00000556534 TMC2Q8TDI7 906 aa11.69□□□□□ -0.54
SCFD1-221ENST00000556534 SCUBE2Q9NQ36 999 aa11.69□□□□□ -0.54
SCFD1-221ENST00000556534 LARP6Q9BRS8 491 aaKnown RBP11.68□□□□□ -0.54
SCFD1-221ENST00000556534 DSG2Q14126 1118 aa11.65□□□□□ -0.54
SCFD1-221ENST00000556534 OTUD5Q96G74 571 aa11.65□□□□□ -0.54
SCFD1-221ENST00000556534 DDX27Q96GQ7 796 aaKnown RBP11.65□□□□□ -0.54
SCFD1-221ENST00000556534 FOXK1P85037 733 aa11.64□□□□□ -0.55
SCFD1-221ENST00000556534 PPP1R15BQ5SWA1 713 aa11.64□□□□□ -0.55
SCFD1-221ENST00000556534 SLAIN1Q8ND83 568 aa11.62□□□□□ -0.55
SCFD1-221ENST00000556534 WDR70Q9NW82 654 aa11.6□□□□□ -0.55
SCFD1-221ENST00000556534 PLPP6Q8IY26 295 aa11.59□□□□□ -0.55
SCFD1-221ENST00000556534 CAMK2BQ13554 666 aa11.57□□□□□ -0.56
SCFD1-221ENST00000556534 KCNV2Q8TDN2 545 aa11.55□□□□□ -0.56
SCFD1-221ENST00000556534 E2F4Q16254 413 aa11.54□□□□□ -0.56
SCFD1-221ENST00000556534 P3H3Q8IVL6 736 aa11.52□□□□□ -0.57
SCFD1-221ENST00000556534 EMILIN3Q9NT22 766 aa11.52□□□□□ -0.57
SCFD1-221ENST00000556534 HOXB3P14651 431 aaPredicted RBP11.5□□□□□ -0.57
SCFD1-221ENST00000556534 PLSCR2Q9NRY7 297 aa11.49□□□□□ -0.57
SCFD1-221ENST00000556534 SLC34A2O95436 690 aa11.47□□□□□ -0.57
SCFD1-221ENST00000556534 OXER1Q8TDS5 423 aa11.46□□□□□ -0.57
SCFD1-221ENST00000556534 ARIH1Q9Y4X5 557 aaPredicted RBP11.46□□□□□ -0.57
SCFD1-221ENST00000556534 DOK7Q18PE1 504 aa11.44□□□□□ -0.58
SCFD1-221ENST00000556534 PTCD2Q8WV60 388 aaKnown RBP11.44□□□□□ -0.58
SCFD1-221ENST00000556534 ARHGEF1Q92888 912 aaKnown RBP11.44□□□□□ -0.58
SCFD1-221ENST00000556534 UPF1Q92900 1129 aaKnown RBP eCLIP11.44□□□□□ -0.58
SCFD1-221ENST00000556534 DPYSL4O14531 572 aa11.42□□□□□ -0.58
SCFD1-221ENST00000556534 SNPHO15079 494 aa11.41□□□□□ -0.58
SCFD1-221ENST00000556534 PCDHGA4Q9Y5G9 962 aa11.4□□□□□ -0.58
SCFD1-221ENST00000556534 PDIA6Q15084 440 aa11.38□□□□□ -0.59
SCFD1-221ENST00000556534 ZSWIM6Q9HCJ5 1215 aa11.38□□□□□ -0.59
SCFD1-221ENST00000556534 RIMBP2O15034 1052 aa11.36□□□□□ -0.59
SCFD1-221ENST00000556534 MAP3K9P80192 1104 aa11.35□□□□□ -0.59
SCFD1-221ENST00000556534 GPR153Q6NV75 609 aa11.35□□□□□ -0.59
SCFD1-221ENST00000556534 ZNF710Q8N1W2 664 aa11.35□□□□□ -0.59
SCFD1-221ENST00000556534 KDM4FA0A1W2PPD8 638 aa11.34□□□□□ -0.59
SCFD1-221ENST00000556534 TBC1D12O60347 775 aa11.33□□□□□ -0.6
SCFD1-221ENST00000556534 ARSIQ5FYB1 569 aa11.33□□□□□ -0.6
SCFD1-221ENST00000556534 KHSRPQ92945 711 aaKnown RBP eCLIP11.33□□□□□ -0.6
SCFD1-221ENST00000556534 SPDYE16A6NNV3 312 aaPredicted RBP11.32□□□□□ -0.6
SCFD1-221ENST00000556534 EVI5O60447 810 aa11.31□□□□□ -0.6
SCFD1-221ENST00000556534 HOXB1P14653 301 aaPredicted RBP11.31□□□□□ -0.6
SCFD1-221ENST00000556534 NBR1Q14596 966 aa11.3□□□□□ -0.6
SCFD1-221ENST00000556534 ST18O60284 1047 aa11.29□□□□□ -0.6
SCFD1-221ENST00000556534 NUDT7P0C024 238 aa11.29□□□□□ -0.6
SCFD1-221ENST00000556534 LCE2DQ5TA82 110 aaPredicted RBP11.29□□□□□ -0.6
SCFD1-221ENST00000556534 BCANQ96GW7 911 aa11.29□□□□□ -0.6
SCFD1-221ENST00000556534 SEMA3EO15041 775 aa11.28□□□□□ -0.6
SCFD1-221ENST00000556534 ZNF316A6NFI3 1004 aaPredicted RBP11.27□□□□□ -0.61
SCFD1-221ENST00000556534 ANO8Q9HCE9 1232 aaPredicted RBP11.27□□□□□ -0.61
SCFD1-221ENST00000556534 TESPA1A2RU30 521 aaPredicted RBP11.26□□□□□ -0.61
SCFD1-221ENST00000556534 PTGER2P43116 358 aa11.24□□□□□ -0.61
SCFD1-221ENST00000556534 MLLT3P42568 568 aaPredicted RBP11.23□□□□□ -0.61
SCFD1-221ENST00000556534 FAM163AQ96GL9 167 aaPredicted RBP11.23□□□□□ -0.61
SCFD1-221ENST00000556534 LHX6Q9UPM6 363 aa11.21□□□□□ -0.61
SCFD1-221ENST00000556534 DDX12PQ92771 950 aa11.19□□□□□ -0.62
SCFD1-221ENST00000556534 MARVELD3Q96A59 401 aa11.19□□□□□ -0.62
SCFD1-221ENST00000556534 JPH4Q96JJ6 628 aa11.19□□□□□ -0.62
SCFD1-221ENST00000556534 FOSBP53539 338 aa11.18□□□□□ -0.62
SCFD1-221ENST00000556534 EMP3P54852 163 aa11.17□□□□□ -0.62
SCFD1-221ENST00000556534 GRXCR2A6NFK2 248 aa11.16□□□□□ -0.62
SCFD1-221ENST00000556534 PHF14O94880 888 aa11.16□□□□□ -0.62
SCFD1-221ENST00000556534 PCDHGA10Q9Y5H3 936 aa11.16□□□□□ -0.62
SCFD1-221ENST00000556534 OSBPP22059 807 aa11.14□□□□□ -0.63
SCFD1-221ENST00000556534 PRIM1P49642 420 aaKnown RBP11.14□□□□□ -0.63
SCFD1-221ENST00000556534 ZNF454Q8N9F8 522 aa11.14□□□□□ -0.63
SCFD1-221ENST00000556534 PSDA5PKW4 1024 aaPredicted RBP11.12□□□□□ -0.63
SCFD1-221ENST00000556534 EPAS1Q99814 870 aa11.12□□□□□ -0.63
SCFD1-221ENST00000556534 ERBB3P21860 1342 aa11.11□□□□□ -0.63
SCFD1-221ENST00000556534 VARS2Q5ST30 1063 aaKnown RBP11.11□□□□□ -0.63
SCFD1-221ENST00000556534 SMYD5Q6GMV2 418 aa11.11□□□□□ -0.63
SCFD1-221ENST00000556534 TYW1BQ6NUM6 668 aa11.11□□□□□ -0.63
SCFD1-221ENST00000556534 EN1Q05925 392 aaPredicted RBP11.1□□□□□ -0.63
SCFD1-221ENST00000556534 PPP4R3BQ5MIZ7 849 aa11.1□□□□□ -0.63
SCFD1-221ENST00000556534 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.1□□□□□ -0.63
SCFD1-221ENST00000556534 POTEB3A0JP26 581 aa11.09□□□□□ -0.63
SCFD1-221ENST00000556534 FAM205CA6NFA0 338 aa11.09□□□□□ -0.63
SCFD1-221ENST00000556534 POTEBQ6S5H4 581 aa11.09□□□□□ -0.63
SCFD1-221ENST00000556534 FBXW7Q969H0 707 aa11.09□□□□□ -0.63
SCFD1-221ENST00000556534 ZDHHC16Q969W1 377 aa11.09□□□□□ -0.63
SCFD1-221ENST00000556534 TULP1O00294 542 aaPredicted RBP11.08□□□□□ -0.64
SCFD1-221ENST00000556534 RBM26Q5T8P6 1007 aaKnown RBP11.08□□□□□ -0.64
SCFD1-221ENST00000556534 LMOD2Q6P5Q4 547 aa11.08□□□□□ -0.64
SCFD1-221ENST00000556534 HS3ST6Q96QI5 342 aa11.08□□□□□ -0.64
SCFD1-221ENST00000556534 ADAM33Q9BZ11 813 aa11.08□□□□□ -0.64
SCFD1-221ENST00000556534 RBM33Q96EV2 1170 aaKnown RBP11.05□□□□□ -0.64
SCFD1-221ENST00000556534 BCL2L12Q9HB09 334 aa11.05□□□□□ -0.64
SCFD1-221ENST00000556534 MAP3K7O43318 606 aa11.04□□□□□ -0.64
SCFD1-221ENST00000556534 CDHR5Q9HBB8 845 aa11.04□□□□□ -0.64
SCFD1-221ENST00000556534 TSR1Q2NL82 804 aaKnown RBP11.03□□□□□ -0.64
SCFD1-221ENST00000556534 GPR37O15354 613 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 130.9 ms