RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 AEBP2Q6ZN18 517 aaPredicted RBP24.98■■□□□ 1.59
SCFD1-221ENST00000556534 CHIC1Q5VXU3 224 aa24.44■■□□□ 1.5
SCFD1-221ENST00000556534 PHF23Q9BUL5 403 aaPredicted RBP21.52■■□□□ 1.04
SCFD1-221ENST00000556534 SENP3Q9H4L4 574 aaPredicted RBP21.14■□□□□ 0.97
SCFD1-221ENST00000556534 PLPPR3Q6T4P5 718 aa19.84■□□□□ 0.77
SCFD1-221ENST00000556534 FOXD1Q16676 465 aa19.63■□□□□ 0.73
SCFD1-221ENST00000556534 PPP6R1Q9UPN7 881 aa18.94■□□□□ 0.62
SCFD1-221ENST00000556534 ADRA2BP18089 450 aa18.91■□□□□ 0.62
SCFD1-221ENST00000556534 PIAS4Q8N2W9 510 aaPredicted RBP18.51■□□□□ 0.55
SCFD1-221ENST00000556534 MSH5O43196 834 aa18.04■□□□□ 0.48
SCFD1-221ENST00000556534 PPP4R3CPQ6ZMV5 832 aa17.5■□□□□ 0.39
SCFD1-221ENST00000556534 POTEDQ86YR6 584 aa17.49■□□□□ 0.39
SCFD1-221ENST00000556534 SCAF1Q9H7N4 1312 aaKnown RBP17.23■□□□□ 0.35
SCFD1-221ENST00000556534 KCNA4P22459 653 aa17.2■□□□□ 0.34
SCFD1-221ENST00000556534 MAPK8IP2Q13387 824 aaPredicted RBP17.13■□□□□ 0.33
SCFD1-221ENST00000556534 NCBP3Q53F19 620 aaKnown RBP17.02■□□□□ 0.32
SCFD1-221ENST00000556534 CNKSR2Q8WXI2 1034 aa16.99■□□□□ 0.31
SCFD1-221ENST00000556534 DMRT2Q9Y5R5 561 aa16.91■□□□□ 0.3
SCFD1-221ENST00000556534 NPM3O75607 178 aaKnown RBP16.83■□□□□ 0.28
SCFD1-221ENST00000556534 RNF216Q9NWF9 866 aaPredicted RBP16.65■□□□□ 0.26
SCFD1-221ENST00000556534 HOXD11P31277 338 aaPredicted RBP16.59■□□□□ 0.25
SCFD1-221ENST00000556534 DNAJC5BQ9UF47 199 aa16.38■□□□□ 0.21
SCFD1-221ENST00000556534 SLC4A1APQ9BWU0 796 aaKnown RBP16.36■□□□□ 0.21
SCFD1-221ENST00000556534 DCAF8L1A6NGE4 600 aa16.09■□□□□ 0.17
SCFD1-221ENST00000556534 EHMT2Q96KQ7 1210 aa15.97■□□□□ 0.15
SCFD1-221ENST00000556534 SLC4A2P04920 1241 aa15.9■□□□□ 0.14
SCFD1-221ENST00000556534 ZBTB22O15209 634 aa15.87■□□□□ 0.13
SCFD1-221ENST00000556534 FOXD4L1Q9NU39 408 aa15.8■□□□□ 0.12
SCFD1-221ENST00000556534 CSRNP3Q8WYN3 585 aa15.79■□□□□ 0.12
SCFD1-221ENST00000556534 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.74■□□□□ 0.116e-8■□□□□ 8.2
SCFD1-221ENST00000556534 U3KPZ7 1027 aaPredicted RBP15.58■□□□□ 0.08
SCFD1-221ENST00000556534 MYCNP04198 464 aaPredicted RBP15.54■□□□□ 0.08
SCFD1-221ENST00000556534 RNF39Q9H2S5 420 aa15.5■□□□□ 0.07
SCFD1-221ENST00000556534 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.32■□□□□ 0.04
SCFD1-221ENST00000556534 HNRNPUL2Q1KMD3 747 aaKnown RBP15.32■□□□□ 0.04
SCFD1-221ENST00000556534 SAMD1Q6SPF0 538 aaPredicted RBP15.29■□□□□ 0.04
SCFD1-221ENST00000556534 C1QBPQ07021 282 aaKnown RBP15.28■□□□□ 0.04
SCFD1-221ENST00000556534 ATXN8OSP0DMR3 200 aa15.22■□□□□ 0.03
SCFD1-221ENST00000556534 APLP2Q06481 763 aa15.14■□□□□ 0.01
SCFD1-221ENST00000556534 ATF5Q9Y2D1 282 aaPredicted RBP15.14■□□□□ 0.01
SCFD1-221ENST00000556534 SPINK5Q9NQ38 1064 aaPredicted RBP15.1■□□□□ 0.01
SCFD1-221ENST00000556534 CACNB1Q02641 598 aaPredicted RBP14.99□□□□□ -0.01
SCFD1-221ENST00000556534 CAPN15O75808 1086 aa14.98□□□□□ -0.01
SCFD1-221ENST00000556534 ZNF219Q9P2Y4 722 aaPredicted RBP14.95□□□□□ -0.02
SCFD1-221ENST00000556534 TRHP20396 242 aaPredicted RBP14.93□□□□□ -0.02
SCFD1-221ENST00000556534 DSG3P32926 999 aa14.76□□□□□ -0.05
SCFD1-221ENST00000556534 ABCB7O75027 752 aa14.74□□□□□ -0.05
SCFD1-221ENST00000556534 POLA2Q14181 598 aa14.71□□□□□ -0.05
SCFD1-221ENST00000556534 MKRN4PQ13434 485 aaPredicted RBP14.5□□□□□ -0.09
SCFD1-221ENST00000556534 ZBTB12Q9Y330 459 aaPredicted RBP14.48□□□□□ -0.09
SCFD1-221ENST00000556534 FBLN2P98095 1184 aa14.44□□□□□ -0.1
SCFD1-221ENST00000556534 OSCARQ8IYS5 282 aa14.26□□□□□ -0.13
SCFD1-221ENST00000556534 FKBP8Q14318 412 aa14.24□□□□□ -0.13
SCFD1-221ENST00000556534 SPDYE4A6NLX3 237 aa14.16□□□□□ -0.14
SCFD1-221ENST00000556534 SPDYE2BA6NHP3 402 aa14.11□□□□□ -0.15
SCFD1-221ENST00000556534 SPDYE6P0CI01 402 aa14.11□□□□□ -0.15
SCFD1-221ENST00000556534 SPDYE2Q495Y8 402 aa14.11□□□□□ -0.15
SCFD1-221ENST00000556534 SSUH2Q9Y2M2 353 aa14.05□□□□□ -0.16
SCFD1-221ENST00000556534 RBM42Q9BTD8 480 aaKnown RBP14.04□□□□□ -0.16
SCFD1-221ENST00000556534 ZNF692Q9BU19 519 aaPredicted RBP14.03□□□□□ -0.16
SCFD1-221ENST00000556534 PROM2Q8N271 834 aa14.01□□□□□ -0.17
SCFD1-221ENST00000556534 AKT1S1Q96B36 256 aa13.89□□□□□ -0.19
SCFD1-221ENST00000556534 PABPN1Q86U42 306 aaKnown RBP eCLIP13.88□□□□□ -0.19
SCFD1-221ENST00000556534 REM2Q8IYK8 340 aaPredicted RBP13.76□□□□□ -0.21
SCFD1-221ENST00000556534 FBXO3Q9UK99 471 aa13.68□□□□□ -0.22
SCFD1-221ENST00000556534 SPDYE1Q8NFV5 336 aaPredicted RBP13.66□□□□□ -0.22
SCFD1-221ENST00000556534 PITPNM1O00562 1244 aa13.63□□□□□ -0.23
SCFD1-221ENST00000556534 STAG3Q9UJ98 1225 aa13.63□□□□□ -0.23
SCFD1-221ENST00000556534 POTEHQ6S545 545 aa13.6□□□□□ -0.23
SCFD1-221ENST00000556534 CLEC11AQ9Y240 323 aa13.57□□□□□ -0.24
SCFD1-221ENST00000556534 VASPP50552 380 aaPredicted RBP13.55□□□□□ -0.24
SCFD1-221ENST00000556534 PRR29P0C7W0 189 aa13.46□□□□□ -0.25
SCFD1-221ENST00000556534 CHRDL2Q6WN34 429 aa13.44□□□□□ -0.26
SCFD1-221ENST00000556534 IFNLR1Q8IU57 520 aaPredicted RBP13.37□□□□□ -0.27
SCFD1-221ENST00000556534 PLCD3Q8N3E9 789 aa13.37□□□□□ -0.27
SCFD1-221ENST00000556534 CREBZFQ9NS37 354 aa13.37□□□□□ -0.27
SCFD1-221ENST00000556534 MIER1Q8N108 512 aa13.36□□□□□ -0.27
SCFD1-221ENST00000556534 FXR2P51116 673 aaKnown RBP eCLIP13.35□□□□□ -0.27
SCFD1-221ENST00000556534 PIP4P2Q8N4L2 257 aa13.3□□□□□ -0.28
SCFD1-221ENST00000556534 CHADLQ6NUI6 762 aa13.28□□□□□ -0.28
SCFD1-221ENST00000556534 PLEKHG5O94827 1062 aa13.27□□□□□ -0.29
SCFD1-221ENST00000556534 MNX1P50219 401 aaPredicted RBP13.26□□□□□ -0.29
SCFD1-221ENST00000556534 PRKAR2AP13861 404 aaKnown RBP13.25□□□□□ -0.29
SCFD1-221ENST00000556534 KLHL34Q8N239 644 aa13.22□□□□□ -0.29
SCFD1-221ENST00000556534 ZBTB47Q9UFB7 747 aaPredicted RBP13.22□□□□□ -0.29
SCFD1-221ENST00000556534 SPOCK2Q92563 424 aa13.17□□□□□ -0.3
SCFD1-221ENST00000556534 FARP1Q9Y4F1 1045 aaPredicted RBP13.15□□□□□ -0.3
SCFD1-221ENST00000556534 NUBP1P53384 320 aa13.1□□□□□ -0.31
SCFD1-221ENST00000556534 AMER1Q5JTC6 1135 aaPredicted RBP13.1□□□□□ -0.31
SCFD1-221ENST00000556534 RTN4Q9NQC3 1192 aaKnown RBP13.09□□□□□ -0.31
SCFD1-221ENST00000556534 NPM1P06748 294 aaKnown RBP eCLIP13.08□□□□□ -0.32
SCFD1-221ENST00000556534 RASEFQ8IZ41 740 aa13.03□□□□□ -0.32
SCFD1-221ENST00000556534 PKD2Q13563 968 aa12.96□□□□□ -0.33
SCFD1-221ENST00000556534 FAM212AQ96EL1 285 aa12.96□□□□□ -0.33
SCFD1-221ENST00000556534 GSE1Q14687 1217 aa12.92□□□□□ -0.34
SCFD1-221ENST00000556534 CIZ1Q9ULV3 898 aaPredicted RBP12.92□□□□□ -0.34
SCFD1-221ENST00000556534 DCAF8Q5TAQ9 597 aa12.9□□□□□ -0.34
SCFD1-221ENST00000556534 C19orf67A6NJJ6 358 aa12.89□□□□□ -0.35
SCFD1-221ENST00000556534 TSPYL2Q9H2G4 693 aaPredicted RBP12.89□□□□□ -0.35
SCFD1-221ENST00000556534 CD44P16070 742 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms