RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 NUDCQ9Y266 331 aa19.92■□□□□ 0.78
ARHGEF40-202ENST00000553709 TMF1P82094 1093 aa19.92■□□□□ 0.78
ARHGEF40-202ENST00000553709 RGS3P49796 1198 aa19.91■□□□□ 0.78
ARHGEF40-202ENST00000553709 NOP58Q9Y2X3 529 aaKnown RBP19.91■□□□□ 0.78
ARHGEF40-202ENST00000553709 ZBTB7CA1YPR0 619 aa19.9■□□□□ 0.78
ARHGEF40-202ENST00000553709 RAB3GAP2Q9H2M9 1393 aa19.9■□□□□ 0.78
ARHGEF40-202ENST00000553709 IFT140Q96RY7 1462 aa19.9■□□□□ 0.78
ARHGEF40-202ENST00000553709 ARID4BQ4LE39 1312 aaPredicted RBP19.89■□□□□ 0.78
ARHGEF40-202ENST00000553709 CCDC18Q5T9S5 1454 aa19.89■□□□□ 0.77
ARHGEF40-202ENST00000553709 NCLP19338 710 aaKnown RBP19.89■□□□□ 0.77
ARHGEF40-202ENST00000553709 TRIM44Q96DX7 344 aaPredicted RBP19.89■□□□□ 0.77
ARHGEF40-202ENST00000553709 FRAT1Q92837 279 aaPredicted RBP19.89■□□□□ 0.77
ARHGEF40-202ENST00000553709 TNNT2P45379 298 aaPredicted RBP19.86■□□□□ 0.77
ARHGEF40-202ENST00000553709 LAS1LQ9Y4W2 734 aaKnown RBP19.86■□□□□ 0.77
ARHGEF40-202ENST00000553709 POGKQ9P215 609 aa19.86■□□□□ 0.77
ARHGEF40-202ENST00000553709 ABCA10Q8WWZ4 1543 aa19.85■□□□□ 0.77
ARHGEF40-202ENST00000553709 BIVM-ERCC5R4GMW8 1640 aa19.85■□□□□ 0.77
ARHGEF40-202ENST00000553709 CASC1Q6TDU7 716 aa19.85■□□□□ 0.77
ARHGEF40-202ENST00000553709 PLEKHG5O94827 1062 aa19.84■□□□□ 0.77
ARHGEF40-202ENST00000553709 DNAJC5BQ9UF47 199 aa19.84■□□□□ 0.77
ARHGEF40-202ENST00000553709 PKD2Q13563 968 aa19.82■□□□□ 0.76
ARHGEF40-202ENST00000553709 ARAP1Q96P48 1450 aa19.82■□□□□ 0.76
ARHGEF40-202ENST00000553709 MS4A1P11836 297 aa19.82■□□□□ 0.76
ARHGEF40-202ENST00000553709 FOXD1Q16676 465 aa19.8■□□□□ 0.76
ARHGEF40-202ENST00000553709 KANK1Q14678 1352 aa19.79■□□□□ 0.76
ARHGEF40-202ENST00000553709 U2SURPO15042 1029 aaKnown RBP19.79■□□□□ 0.76
ARHGEF40-202ENST00000553709 CHMP4BQ9H444 224 aaKnown RBP19.79■□□□□ 0.76
ARHGEF40-202ENST00000553709 MPHOSPH9Q99550 1183 aa19.78■□□□□ 0.76
ARHGEF40-202ENST00000553709 CASKIN1Q8WXD9 1431 aa19.78■□□□□ 0.76
ARHGEF40-202ENST00000553709 EFCAB5A4FU69 1503 aa19.78■□□□□ 0.76
ARHGEF40-202ENST00000553709 RBM19Q9Y4C8 960 aaKnown RBP19.77■□□□□ 0.76
ARHGEF40-202ENST00000553709 PTPRGP23470 1445 aa19.77■□□□□ 0.76
ARHGEF40-202ENST00000553709 ERICH6BQ5W0A0 696 aa19.76■□□□□ 0.75
ARHGEF40-202ENST00000553709 KTN1Q86UP2 1357 aaKnown RBP19.75■□□□□ 0.75
ARHGEF40-202ENST00000553709 PNNQ9H307 717 aaKnown RBP19.75■□□□□ 0.75
ARHGEF40-202ENST00000553709 A0A0G2JS52 829 aa19.73■□□□□ 0.75
ARHGEF40-202ENST00000553709 LRRC9Q6ZRR7 1453 aa19.73■□□□□ 0.75
ARHGEF40-202ENST00000553709 FYCO1Q9BQS8 1478 aa19.72■□□□□ 0.75
ARHGEF40-202ENST00000553709 ANKRD30AQ9BXX3 1397 aa19.72■□□□□ 0.75
ARHGEF40-202ENST00000553709 EFCAB2Q5VUJ9 269 aa19.71■□□□□ 0.75
ARHGEF40-202ENST00000553709 URB2Q14146 1524 aaKnown RBP19.71■□□□□ 0.75
ARHGEF40-202ENST00000553709 MORC1Q86VD1 984 aa19.71■□□□□ 0.75
ARHGEF40-202ENST00000553709 CUL7Q14999 1698 aa19.69■□□□□ 0.74
ARHGEF40-202ENST00000553709 PTMAP06454 111 aaKnown RBP19.69■□□□□ 0.74
ARHGEF40-202ENST00000553709 RALBP1Q15311 655 aa19.69■□□□□ 0.74
ARHGEF40-202ENST00000553709 NUP155O75694 1391 aa19.68■□□□□ 0.74
ARHGEF40-202ENST00000553709 ROCK2O75116 1388 aaKnown RBP19.67■□□□□ 0.74
ARHGEF40-202ENST00000553709 SNAPC4Q5SXM2 1469 aa19.67■□□□□ 0.74
ARHGEF40-202ENST00000553709 RSPH4AQ5TD94 716 aa19.67■□□□□ 0.74
ARHGEF40-202ENST00000553709 HSP90AB1P08238 724 aaKnown RBP19.67■□□□□ 0.74
ARHGEF40-202ENST00000553709 HAP1P54257 671 aaPredicted RBP19.67■□□□□ 0.74
ARHGEF40-202ENST00000553709 SRPK2P78362 688 aaKnown RBP19.66■□□□□ 0.74
ARHGEF40-202ENST00000553709 TRHP20396 242 aaPredicted RBP19.66■□□□□ 0.74
ARHGEF40-202ENST00000553709 RCAN3Q9UKA8 241 aa19.65■□□□□ 0.74
ARHGEF40-202ENST00000553709 L3MBTL2Q969R5 705 aa19.64■□□□□ 0.73
ARHGEF40-202ENST00000553709 PHLDB1Q86UU1 1377 aa19.63■□□□□ 0.73
ARHGEF40-202ENST00000553709 FGD6Q6ZV73 1430 aa19.63■□□□□ 0.73
ARHGEF40-202ENST00000553709 MYOM3Q5VTT5 1437 aa19.63■□□□□ 0.73
ARHGEF40-202ENST00000553709 DHX57Q6P158 1386 aaKnown RBP19.62■□□□□ 0.73
ARHGEF40-202ENST00000553709 ZRSR1Q15695 479 aaKnown RBP19.62■□□□□ 0.73
ARHGEF40-202ENST00000553709 PRDM2Q13029 1718 aa19.62■□□□□ 0.73
ARHGEF40-202ENST00000553709 HNRNPMP52272 730 aaKnown RBP eCLIP19.61■□□□□ 0.73
ARHGEF40-202ENST00000553709 HSCBQ8IWL3 235 aa19.6■□□□□ 0.73
ARHGEF40-202ENST00000553709 TPRNQ4KMQ1 711 aa19.6■□□□□ 0.73
ARHGEF40-202ENST00000553709 RTN4Q9NQC3 1192 aaKnown RBP19.6■□□□□ 0.73
ARHGEF40-202ENST00000553709 SAFB2Q14151 953 aaKnown RBP eCLIP19.59■□□□□ 0.73
ARHGEF40-202ENST00000553709 OSCARQ8IYS5 282 aa19.59■□□□□ 0.73
ARHGEF40-202ENST00000553709 TSHZ2Q9NRE2 1034 aa19.57■□□□□ 0.72
ARHGEF40-202ENST00000553709 NCOA2Q15596 1464 aa19.57■□□□□ 0.72
ARHGEF40-202ENST00000553709 DNTTIP2Q5QJE6 756 aaKnown RBP19.57■□□□□ 0.72
ARHGEF40-202ENST00000553709 LMOD2Q6P5Q4 547 aa19.57■□□□□ 0.72
ARHGEF40-202ENST00000553709 OS9Q13438 667 aaPredicted RBP19.57■□□□□ 0.72
ARHGEF40-202ENST00000553709 GGT6Q6P531 493 aa19.57■□□□□ 0.72
ARHGEF40-202ENST00000553709 RRBP1Q9P2E9 1410 aaKnown RBP19.57■□□□□ 0.72
ARHGEF40-202ENST00000553709 DEKP35659 375 aaKnown RBP19.56■□□□□ 0.72
ARHGEF40-202ENST00000553709 TCERG1O14776 1098 aaKnown RBP19.56■□□□□ 0.72
ARHGEF40-202ENST00000553709 KIAA0586Q9BVV6 1533 aa19.55■□□□□ 0.72
ARHGEF40-202ENST00000553709 TIAM1Q13009 1591 aa19.55■□□□□ 0.72
ARHGEF40-202ENST00000553709 HDGFP51858 240 aaKnown RBP19.55■□□□□ 0.72
ARHGEF40-202ENST00000553709 NAP1L5Q96NT1 182 aaPredicted RBP19.53■□□□□ 0.72
ARHGEF40-202ENST00000553709 CDK11BP21127 795 aaKnown RBP19.53■□□□□ 0.72
ARHGEF40-202ENST00000553709 IPO8O15397 1037 aaKnown RBP19.52■□□□□ 0.72
ARHGEF40-202ENST00000553709 PRG4Q92954 1404 aaPredicted RBP19.52■□□□□ 0.72
ARHGEF40-202ENST00000553709 HDGFL2Q7Z4V5 671 aaPredicted RBP19.52■□□□□ 0.72
ARHGEF40-202ENST00000553709 IQGAP2Q13576 1575 aa19.52■□□□□ 0.72
ARHGEF40-202ENST00000553709 STK26Q9P289 416 aa19.52■□□□□ 0.71
ARHGEF40-202ENST00000553709 U2AF1L5P0DN76 240 aaPredicted RBP19.51■□□□□ 0.71
ARHGEF40-202ENST00000553709 U2AF1Q01081 240 aaKnown RBP eCLIP19.51■□□□□ 0.71
ARHGEF40-202ENST00000553709 NLRP13Q86W25 1043 aa19.51■□□□□ 0.71
ARHGEF40-202ENST00000553709 EIF3AQ14152 1382 aaKnown RBP19.5■□□□□ 0.71
ARHGEF40-202ENST00000553709 KCNJ4P48050 445 aa19.5■□□□□ 0.71
ARHGEF40-202ENST00000553709 CFAP44Q96MT7 982 aa19.5■□□□□ 0.71
ARHGEF40-202ENST00000553709 HECW1Q76N89 1606 aa19.5■□□□□ 0.71
ARHGEF40-202ENST00000553709 EHBP1L1Q8N3D4 1523 aa19.5■□□□□ 0.71
ARHGEF40-202ENST00000553709 SOX12O15370 315 aa19.49■□□□□ 0.71
ARHGEF40-202ENST00000553709 SPAG9O60271 1321 aaKnown RBP19.49■□□□□ 0.71
ARHGEF40-202ENST00000553709 PLCB2Q00722 1185 aa19.49■□□□□ 0.71
ARHGEF40-202ENST00000553709 MAGI1Q96QZ7 1491 aaPredicted RBP19.49■□□□□ 0.71
ARHGEF40-202ENST00000553709 MLECQ14165 292 aa19.48■□□□□ 0.71
ARHGEF40-202ENST00000553709 L1TD1Q5T7N2 865 aaKnown RBP19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms