RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 NISCHQ9Y2I1 1504 aa27.94■■■□□ 2.06
ARHGEF40-202ENST00000553709 DCAF8L2P0C7V8 631 aa26.42■■□□□ 1.82
ARHGEF40-202ENST00000553709 SUPT5HO00267 1087 aaKnown RBP25.42■■□□□ 1.66
ARHGEF40-202ENST00000553709 SHROOM4Q9ULL8 1493 aa25.01■■□□□ 1.59
ARHGEF40-202ENST00000553709 EHMT2Q96KQ7 1210 aa24.41■■□□□ 1.5
ARHGEF40-202ENST00000553709 APLP2Q06481 763 aa23.97■■□□□ 1.43
ARHGEF40-202ENST00000553709 FAM9AQ8IZU1 332 aaPredicted RBP23.92■■□□□ 1.42
ARHGEF40-202ENST00000553709 PELP1Q8IZL8 1130 aaKnown RBP23.91■■□□□ 1.42
ARHGEF40-202ENST00000553709 PCGF6Q9BYE7 350 aa23.9■■□□□ 1.42
ARHGEF40-202ENST00000553709 TTBK1Q5TCY1 1321 aaPredicted RBP23.63■■□□□ 1.37
ARHGEF40-202ENST00000553709 CCDC180Q9P1Z9 1646 aa23.61■■□□□ 1.37
ARHGEF40-202ENST00000553709 TRIM41Q8WV44 630 aa23.57■■□□□ 1.36
ARHGEF40-202ENST00000553709 ZEB1P37275 1124 aaPredicted RBP23.51■■□□□ 1.35
ARHGEF40-202ENST00000553709 ABCC9O60706 1549 aa23.48■■□□□ 1.35
ARHGEF40-202ENST00000553709 CCER1Q8TC90 406 aaPredicted RBP23.36■■□□□ 1.33
ARHGEF40-202ENST00000553709 CENPBP07199 599 aaPredicted RBP23.33■■□□□ 1.33
ARHGEF40-202ENST00000553709 RANGAP1P46060 587 aaPredicted RBP23.31■■□□□ 1.32
ARHGEF40-202ENST00000553709 ZCCHC6Q5VYS8 1495 aaKnown RBP23.3■■□□□ 1.32
ARHGEF40-202ENST00000553709 UBTFP17480 764 aaKnown RBP23.19■■□□□ 1.3
ARHGEF40-202ENST00000553709 ATP1B4Q9UN42 357 aaPredicted RBP23.04■■□□□ 1.28
ARHGEF40-202ENST00000553709 TRIM26Q12899 539 aaPredicted RBP22.96■■□□□ 1.27
ARHGEF40-202ENST00000553709 PPARGC1BQ86YN6 1023 aaKnown RBP22.89■■□□□ 1.26
ARHGEF40-202ENST00000553709 ERICH6Q7L0X2 663 aa22.86■■□□□ 1.25
ARHGEF40-202ENST00000553709 HRCP23327 699 aa22.84■■□□□ 1.25
ARHGEF40-202ENST00000553709 CHIC1Q5VXU3 224 aa22.81■■□□□ 1.24
ARHGEF40-202ENST00000553709 YTHDC1Q96MU7 727 aaKnown RBP22.81■■□□□ 1.24
ARHGEF40-202ENST00000553709 PABPN1Q86U42 306 aaKnown RBP eCLIP22.76■■□□□ 1.23
ARHGEF40-202ENST00000553709 MYT1Q01538 1121 aa22.75■■□□□ 1.23
ARHGEF40-202ENST00000553709 SCRIBQ14160 1630 aa22.72■■□□□ 1.23
ARHGEF40-202ENST00000553709 LOC105371045A0A1W2PR82 267 aa22.72■■□□□ 1.23
ARHGEF40-202ENST00000553709 NEFLP07196 543 aa22.71■■□□□ 1.23
ARHGEF40-202ENST00000553709 DCAF1Q9Y4B6 1507 aa22.57■■□□□ 1.2
ARHGEF40-202ENST00000553709 NACADO15069 1562 aa22.51■■□□□ 1.19
ARHGEF40-202ENST00000553709 RB1CC1Q8TDY2 1594 aa22.51■■□□□ 1.19
ARHGEF40-202ENST00000553709 ITGAEP38570 1179 aa22.42■■□□□ 1.18
ARHGEF40-202ENST00000553709 HNRNPUL2Q1KMD3 747 aaKnown RBP22.39■■□□□ 1.18
ARHGEF40-202ENST00000553709 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.22■■□□□ 1.15
ARHGEF40-202ENST00000553709 DIEXFQ68CQ4 756 aaKnown RBP22.12■■□□□ 1.13
ARHGEF40-202ENST00000553709 POLR3GLQ9BT43 218 aa22.12■■□□□ 1.13
ARHGEF40-202ENST00000553709 MYO15BQ96JP2 1530 aa22.08■■□□□ 1.13
ARHGEF40-202ENST00000553709 RSF1Q96T23 1441 aaPredicted RBP22.05■■□□□ 1.12
ARHGEF40-202ENST00000553709 MYT1LQ9UL68 1186 aa21.97■■□□□ 1.11
ARHGEF40-202ENST00000553709 DAXXQ9UER7 740 aaPredicted RBP21.91■■□□□ 1.1
ARHGEF40-202ENST00000553709 CNGB1Q14028 1251 aaPredicted RBP21.91■■□□□ 1.1
ARHGEF40-202ENST00000553709 FAM50AQ14320 339 aaKnown RBP21.89■■□□□ 1.1
ARHGEF40-202ENST00000553709 BAZ1AQ9NRL2 1556 aaPredicted RBP21.82■■□□□ 1.08
ARHGEF40-202ENST00000553709 CECR2Q9BXF3 1484 aa21.78■■□□□ 1.08
ARHGEF40-202ENST00000553709 NEUROD1Q13562 356 aa21.73■■□□□ 1.07
ARHGEF40-202ENST00000553709 TRIM52Q96A61 297 aa21.72■■□□□ 1.07
ARHGEF40-202ENST00000553709 GTF3C3Q9Y5Q9 886 aa21.67■■□□□ 1.06
ARHGEF40-202ENST00000553709 CSRNP3Q8WYN3 585 aa21.67■■□□□ 1.06
ARHGEF40-202ENST00000553709 ZNF316A6NFI3 1004 aaPredicted RBP21.64■■□□□ 1.06
ARHGEF40-202ENST00000553709 BAZ1BQ9UIG0 1483 aaKnown RBP21.62■■□□□ 1.05
ARHGEF40-202ENST00000553709 MROH2BQ7Z745 1585 aa21.59■■□□□ 1.05
ARHGEF40-202ENST00000553709 SLC4A1APQ9BWU0 796 aaKnown RBP21.58■■□□□ 1.04
ARHGEF40-202ENST00000553709 ANP32CO43423 234 aa21.57■■□□□ 1.04
ARHGEF40-202ENST00000553709 RTL5Q5HYW3 569 aaPredicted RBP21.52■■□□□ 1.03
ARHGEF40-202ENST00000553709 BCANQ96GW7 911 aa21.51■■□□□ 1.03
ARHGEF40-202ENST00000553709 CLSPNQ9HAW4 1339 aa21.48■■□□□ 1.03
ARHGEF40-202ENST00000553709 ZNF326Q5BKZ1 582 aaKnown RBP21.44■■□□□ 1.02
ARHGEF40-202ENST00000553709 ACIN1Q9UKV3 1341 aaKnown RBP21.44■■□□□ 1.02
ARHGEF40-202ENST00000553709 P3H3Q8IVL6 736 aa21.37■■□□□ 1.01
ARHGEF40-202ENST00000553709 CDK11AQ9UQ88 783 aaPredicted RBP21.35■■□□□ 1.01
ARHGEF40-202ENST00000553709 SMARCA2P51531 1590 aa21.35■■□□□ 1.01
ARHGEF40-202ENST00000553709 WRNQ14191 1432 aaPredicted RBP eCLIP21.34■■□□□ 1.01
ARHGEF40-202ENST00000553709 WIZO95785 1651 aa21.33■■□□□ 1.01
ARHGEF40-202ENST00000553709 EEA1Q15075 1411 aa21.3■■□□□ 1
ARHGEF40-202ENST00000553709 FBLN2P98095 1184 aa21.29■■□□□ 1
ARHGEF40-202ENST00000553709 CCDC88BA6NC98 1476 aa21.29■■□□□ 1
ARHGEF40-202ENST00000553709 TOP2AP11388 1531 aaKnown RBP21.28■■□□□ 1
ARHGEF40-202ENST00000553709 SMARCA4P51532 1647 aa21.26■□□□□ 0.99
ARHGEF40-202ENST00000553709 ARID3CA6NKF2 412 aa21.21■□□□□ 0.99
ARHGEF40-202ENST00000553709 ATAD2BQ9ULI0 1458 aa21.12■□□□□ 0.97
ARHGEF40-202ENST00000553709 GOLGA3Q08378 1498 aa21.1■□□□□ 0.97
ARHGEF40-202ENST00000553709 ZNF777Q9ULD5 760 aaPredicted RBP21.1■□□□□ 0.97
ARHGEF40-202ENST00000553709 TONSLQ96HA7 1378 aa21.09■□□□□ 0.97
ARHGEF40-202ENST00000553709 KIF27Q86VH2 1401 aa21.04■□□□□ 0.96
ARHGEF40-202ENST00000553709 CANXP27824 592 aaKnown RBP21.04■□□□□ 0.96
ARHGEF40-202ENST00000553709 ZBTB47Q9UFB7 747 aaPredicted RBP21.02■□□□□ 0.96
ARHGEF40-202ENST00000553709 CLIP1P30622 1438 aa21.01■□□□□ 0.95
ARHGEF40-202ENST00000553709 ABCC8Q09428 1581 aa21.01■□□□□ 0.95
ARHGEF40-202ENST00000553709 CEP164Q9UPV0 1460 aa21■□□□□ 0.95
ARHGEF40-202ENST00000553709 FKBP8Q14318 412 aa21■□□□□ 0.95
ARHGEF40-202ENST00000553709 DDX10Q13206 875 aaKnown RBP20.99■□□□□ 0.95
ARHGEF40-202ENST00000553709 CEP162Q5TB80 1403 aa20.98■□□□□ 0.95
ARHGEF40-202ENST00000553709 TNIKQ9UKE5 1360 aa20.98■□□□□ 0.95
ARHGEF40-202ENST00000553709 ANP32AP39687 249 aaKnown RBP20.97■□□□□ 0.95
ARHGEF40-202ENST00000553709 HNRNPUQ00839 825 aaKnown RBP eCLIP20.93■□□□□ 0.94
ARHGEF40-202ENST00000553709 SOGA1O94964 1423 aa20.93■□□□□ 0.94
ARHGEF40-202ENST00000553709 NEFMP07197 916 aa20.91■□□□□ 0.94
ARHGEF40-202ENST00000553709 FAM9BQ8IZU0 186 aa20.85■□□□□ 0.93
ARHGEF40-202ENST00000553709 CADPSQ9ULU8 1353 aa20.84■□□□□ 0.93
ARHGEF40-202ENST00000553709 CHIC2Q9UKJ5 165 aa20.83■□□□□ 0.93
ARHGEF40-202ENST00000553709 NPM2Q86SE8 214 aaKnown RBP20.83■□□□□ 0.92
ARHGEF40-202ENST00000553709 MIER1Q8N108 512 aa20.81■□□□□ 0.92
ARHGEF40-202ENST00000553709 BCL11AQ9H165 835 aa20.8■□□□□ 0.92
ARHGEF40-202ENST00000553709 CUX2O14529 1486 aa20.79■□□□□ 0.92
ARHGEF40-202ENST00000553709 EIF4G1Q04637 1599 aaKnown RBP20.78■□□□□ 0.92
ARHGEF40-202ENST00000553709 PDS5BQ9NTI5 1447 aa20.78■□□□□ 0.92
ARHGEF40-202ENST00000553709 CHMP7Q8WUX9 453 aaPredicted RBP20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms