RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, human

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LEMD3-205	ENST00000544506	LARP6	Q9BRS8	491 aa	Known RBP	12.95	□□□□□ -0.34
LEMD3-205	ENST00000544506	MFSD10	Q14728	455 aa		12.93	□□□□□ -0.34
LEMD3-205	ENST00000544506	C3orf67	Q6ZVT6	689 aa		12.93	□□□□□ -0.34
LEMD3-205	ENST00000544506	POTEB2	H3BUK9	544 aa		12.92	□□□□□ -0.34
LEMD3-205	ENST00000544506	GPHN	Q9NQX3	736 aa	Predicted RBP	12.92	□□□□□ -0.34
LEMD3-205	ENST00000544506	TMEM92	Q6UXU6	159 aa		12.91	□□□□□ -0.34
LEMD3-205	ENST00000544506	TMC2	Q8TDI7	906 aa		12.91	□□□□□ -0.34
LEMD3-205	ENST00000544506	DDX27	Q96GQ7	796 aa	Known RBP	12.91	□□□□□ -0.34
LEMD3-205	ENST00000544506	POTEJ	P0CG39	1038 aa		12.9	□□□□□ -0.34
LEMD3-205	ENST00000544506	C2orf72	A6NCS6	295 aa		12.89	□□□□□ -0.35
LEMD3-205	ENST00000544506	KIF3C	O14782	793 aa		12.89	□□□□□ -0.35
LEMD3-205	ENST00000544506	DSG2	Q14126	1118 aa		12.86	□□□□□ -0.35
LEMD3-205	ENST00000544506	PPP1R15B	Q5SWA1	713 aa		12.86	□□□□□ -0.35
LEMD3-205	ENST00000544506	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	12.85	□□□□□ -0.35
LEMD3-205	ENST00000544506	FOXK1	P85037	733 aa		12.84	□□□□□ -0.35
LEMD3-205	ENST00000544506	P3H3	Q8IVL6	736 aa		12.84	□□□□□ -0.35
LEMD3-205	ENST00000544506	KCNV2	Q8TDN2	545 aa		12.84	□□□□□ -0.35
LEMD3-205	ENST00000544506	E2F4	Q16254	413 aa		12.83	□□□□□ -0.36
LEMD3-205	ENST00000544506	PLPP6	Q8IY26	295 aa		12.79	□□□□□ -0.36
LEMD3-205	ENST00000544506	CAMK2B	Q13554	666 aa		12.78	□□□□□ -0.36
LEMD3-205	ENST00000544506	SCUBE2	Q9NQ36	999 aa		12.78	□□□□□ -0.36
LEMD3-205	ENST00000544506	MAMSTR	Q6ZN01	415 aa		12.76	□□□□□ -0.37
LEMD3-205	ENST00000544506	BCAN	Q96GW7	911 aa		12.75	□□□□□ -0.37
LEMD3-205	ENST00000544506	EMILIN3	Q9NT22	766 aa		12.72	□□□□□ -0.37
LEMD3-205	ENST00000544506	SLAIN1	Q8ND83	568 aa		12.71	□□□□□ -0.37
LEMD3-205	ENST00000544506	ARHGEF1	Q92888	912 aa	Known RBP	12.71	□□□□□ -0.37
LEMD3-205	ENST00000544506	NBR1	Q14596	966 aa		12.7	□□□□□ -0.38
LEMD3-205	ENST00000544506	LHX8	Q68G74	356 aa		12.69	□□□□□ -0.38
LEMD3-205	ENST00000544506	ARIH1	Q9Y4X5	557 aa	Predicted RBP	12.68	□□□□□ -0.38
LEMD3-205	ENST00000544506	OTUD5	Q96G74	571 aa		12.66	□□□□□ -0.38
LEMD3-205	ENST00000544506	DPYSL4	O14531	572 aa		12.64	□□□□□ -0.39
LEMD3-205	ENST00000544506	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.64	□□□□□ -0.39
LEMD3-205	ENST00000544506	OXER1	Q8TDS5	423 aa		12.62	□□□□□ -0.39
LEMD3-205	ENST00000544506	SLC34A2	O95436	690 aa		12.6	□□□□□ -0.39
LEMD3-205	ENST00000544506	PTCD2	Q8WV60	388 aa	Known RBP	12.59	□□□□□ -0.39
LEMD3-205	ENST00000544506	MAP3K9	P80192	1104 aa		12.58	□□□□□ -0.4
LEMD3-205	ENST00000544506	SEMA3E	O15041	775 aa		12.57	□□□□□ -0.4
LEMD3-205	ENST00000544506	HOXB3	P14651	431 aa	Predicted RBP	12.57	□□□□□ -0.4
LEMD3-205	ENST00000544506	PDIA6	Q15084	440 aa		12.57	□□□□□ -0.4
LEMD3-205	ENST00000544506	DOK7	Q18PE1	504 aa		12.55	□□□□□ -0.4
LEMD3-205	ENST00000544506	PCDHGA4	Q9Y5G9	962 aa		12.54	□□□□□ -0.4
LEMD3-205	ENST00000544506	SPDYE16	A6NNV3	312 aa	Predicted RBP	12.53	□□□□□ -0.4
LEMD3-205	ENST00000544506	TBC1D12	O60347	775 aa		12.53	□□□□□ -0.4
LEMD3-205	ENST00000544506	TESPA1	A2RU30	521 aa	Predicted RBP	12.51	□□□□□ -0.41
LEMD3-205	ENST00000544506	EVI5	O60447	810 aa		12.5	□□□□□ -0.41
LEMD3-205	ENST00000544506	RIMBP2	O15034	1052 aa		12.49	□□□□□ -0.41
LEMD3-205	ENST00000544506	SNPH	O15079	494 aa		12.49	□□□□□ -0.41
LEMD3-205	ENST00000544506	ZNF710	Q8N1W2	664 aa		12.48	□□□□□ -0.41
LEMD3-205	ENST00000544506	MLLT3	P42568	568 aa	Predicted RBP	12.47	□□□□□ -0.41
LEMD3-205	ENST00000544506	ZSWIM6	Q9HCJ5	1215 aa		12.47	□□□□□ -0.41
LEMD3-205	ENST00000544506	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.46	□□□□□ -0.41
LEMD3-205	ENST00000544506	ARSI	Q5FYB1	569 aa		12.46	□□□□□ -0.41
LEMD3-205	ENST00000544506	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.45	□□□□□ -0.42	4e-7	■■□□□ 12.5
LEMD3-205	ENST00000544506	GPR153	Q6NV75	609 aa		12.44	□□□□□ -0.42
LEMD3-205	ENST00000544506	KDM4F	A0A1W2PPD8	638 aa		12.42	□□□□□ -0.42
LEMD3-205	ENST00000544506	NUDT7	P0C024	238 aa		12.42	□□□□□ -0.42
LEMD3-205	ENST00000544506	ANO8	Q9HCE9	1232 aa	Predicted RBP	12.42	□□□□□ -0.42
LEMD3-205	ENST00000544506	TULP1	O00294	542 aa	Predicted RBP	12.41	□□□□□ -0.42
LEMD3-205	ENST00000544506	PTGER2	P43116	358 aa		12.41	□□□□□ -0.42
LEMD3-205	ENST00000544506	SMYD5	Q6GMV2	418 aa		12.41	□□□□□ -0.42
LEMD3-205	ENST00000544506	GRXCR2	A6NFK2	248 aa		12.4	□□□□□ -0.42
LEMD3-205	ENST00000544506	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	12.4	□□□□□ -0.42
LEMD3-205	ENST00000544506	DDX12P	Q92771	950 aa		12.4	□□□□□ -0.42
LEMD3-205	ENST00000544506	LMOD2	Q6P5Q4	547 aa		12.39	□□□□□ -0.43
LEMD3-205	ENST00000544506	HOXB1	P14653	301 aa	Predicted RBP	12.37	□□□□□ -0.43
LEMD3-205	ENST00000544506	OSBP	P22059	807 aa		12.33	□□□□□ -0.44
LEMD3-205	ENST00000544506	RBM26	Q5T8P6	1007 aa	Known RBP	12.33	□□□□□ -0.44
LEMD3-205	ENST00000544506	PHF14	O94880	888 aa		12.32	□□□□□ -0.44
LEMD3-205	ENST00000544506	LHX6	Q9UPM6	363 aa		12.32	□□□□□ -0.44
LEMD3-205	ENST00000544506	ST18	O60284	1047 aa		12.31	□□□□□ -0.44
LEMD3-205	ENST00000544506	TPRN	Q4KMQ1	711 aa		12.31	□□□□□ -0.44
LEMD3-205	ENST00000544506	JPH4	Q96JJ6	628 aa		12.31	□□□□□ -0.44
LEMD3-205	ENST00000544506	PCDHGA10	Q9Y5H3	936 aa		12.31	□□□□□ -0.44
LEMD3-205	ENST00000544506	PRIM1	P49642	420 aa	Known RBP	12.3	□□□□□ -0.44
LEMD3-205	ENST00000544506	FOSB	P53539	338 aa		12.29	□□□□□ -0.44
LEMD3-205	ENST00000544506	ZNF454	Q8N9F8	522 aa		12.29	□□□□□ -0.44
LEMD3-205	ENST00000544506	EPAS1	Q99814	870 aa		12.29	□□□□□ -0.44
LEMD3-205	ENST00000544506	FAM163A	Q96GL9	167 aa	Predicted RBP	12.27	□□□□□ -0.45
LEMD3-205	ENST00000544506	PRKCSH	P14314	528 aa	Predicted RBP	12.26	□□□□□ -0.45
LEMD3-205	ENST00000544506	TYW1B	Q6NUM6	668 aa		12.26	□□□□□ -0.45
LEMD3-205	ENST00000544506	EN1	Q05925	392 aa	Predicted RBP	12.25	□□□□□ -0.45
LEMD3-205	ENST00000544506	GPIHBP1	Q8IV16	184 aa		12.24	□□□□□ -0.45
LEMD3-205	ENST00000544506	RBM33	Q96EV2	1170 aa	Known RBP	12.24	□□□□□ -0.45
LEMD3-205	ENST00000544506	FBXW7	Q969H0	707 aa		12.23	□□□□□ -0.45
LEMD3-205	ENST00000544506	ZDHHC16	Q969W1	377 aa		12.23	□□□□□ -0.45
LEMD3-205	ENST00000544506	MARVELD3	Q96A59	401 aa		12.23	□□□□□ -0.45
LEMD3-205	ENST00000544506	PSD	A5PKW4	1024 aa	Predicted RBP	12.22	□□□□□ -0.45
LEMD3-205	ENST00000544506	MAP3K7	O43318	606 aa		12.22	□□□□□ -0.45
LEMD3-205	ENST00000544506	LCE2D	Q5TA82	110 aa	Predicted RBP	12.22	□□□□□ -0.45
LEMD3-205	ENST00000544506	ZC3H15	Q8WU90	426 aa	Known RBP	12.22	□□□□□ -0.45
LEMD3-205	ENST00000544506	EMP3	P54852	163 aa		12.21	□□□□□ -0.45
LEMD3-205	ENST00000544506	PPP4R3B	Q5MIZ7	849 aa		12.21	□□□□□ -0.45
LEMD3-205	ENST00000544506	NUTM2F	A1L443	756 aa		12.2	□□□□□ -0.46
LEMD3-205	ENST00000544506	ADAM33	Q9BZ11	813 aa		12.2	□□□□□ -0.46
LEMD3-205	ENST00000544506	ERBB3	P21860	1342 aa		12.19	□□□□□ -0.46
LEMD3-205	ENST00000544506	GPR37	O15354	613 aa		12.19	□□□□□ -0.46
LEMD3-205	ENST00000544506	TSR1	Q2NL82	804 aa	Known RBP	12.19	□□□□□ -0.46
LEMD3-205	ENST00000544506	CDHR5	Q9HBB8	845 aa		12.19	□□□□□ -0.46
LEMD3-205	ENST00000544506	VARS2	Q5ST30	1063 aa	Known RBP	12.17	□□□□□ -0.46
LEMD3-205	ENST00000544506	C6orf132	Q5T0Z8	1188 aa		12.15	□□□□□ -0.46

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