RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 GPATCH8Q9UKJ3 1502 aaKnown RBP17.9■□□□□ 0.46
YBX3-213ENST00000542641 EFCAB2Q5VUJ9 269 aa17.88■□□□□ 0.45
YBX3-213ENST00000542641 CFDP1Q9UEE9 299 aaPredicted RBP17.88■□□□□ 0.45
YBX3-213ENST00000542641 PHLDB1Q86UU1 1377 aa17.87■□□□□ 0.45
YBX3-213ENST00000542641 SCAF1Q9H7N4 1312 aaKnown RBP17.86■□□□□ 0.45
YBX3-213ENST00000542641 TSPOAP1O95153 1857 aa17.85■□□□□ 0.45
YBX3-213ENST00000542641 ARHGAP5Q13017 1502 aa17.85■□□□□ 0.45
YBX3-213ENST00000542641 TEX14Q8IWB6 1497 aa17.85■□□□□ 0.45
YBX3-213ENST00000542641 MYO5CQ9NQX4 1742 aa17.85■□□□□ 0.45
YBX3-213ENST00000542641 ZNF777Q9ULD5 760 aaPredicted RBP17.85■□□□□ 0.45
YBX3-213ENST00000542641 FANCAO15360 1455 aa17.84■□□□□ 0.45
YBX3-213ENST00000542641 MYOM3Q5VTT5 1437 aa17.84■□□□□ 0.45
YBX3-213ENST00000542641 ARAP3Q8WWN8 1544 aa17.83■□□□□ 0.45
YBX3-213ENST00000542641 CDC42BPAQ5VT25 1732 aa17.83■□□□□ 0.44
YBX3-213ENST00000542641 PREX2Q70Z35 1606 aa17.83■□□□□ 0.44
YBX3-213ENST00000542641 NEO1Q92859 1461 aa17.81■□□□□ 0.44
YBX3-213ENST00000542641 CDC42BPBQ9Y5S2 1711 aa17.81■□□□□ 0.44
YBX3-213ENST00000542641 PPRC1Q5VV67 1664 aaKnown RBP17.8■□□□□ 0.44
YBX3-213ENST00000542641 ITSN2Q9NZM3 1697 aa17.8■□□□□ 0.44
YBX3-213ENST00000542641 AKNAQ7Z591 1439 aa17.8■□□□□ 0.44
YBX3-213ENST00000542641 MIA2Q96PC5 1412 aa17.8■□□□□ 0.44
YBX3-213ENST00000542641 ZNF644Q9H582 1327 aaPredicted RBP17.79■□□□□ 0.44
YBX3-213ENST00000542641 FGD6Q6ZV73 1430 aa17.78■□□□□ 0.44
YBX3-213ENST00000542641 CFAP74Q9C0B2 1584 aa17.77■□□□□ 0.44
YBX3-213ENST00000542641 ADGRL1O94910 1474 aa17.75■□□□□ 0.43
YBX3-213ENST00000542641 SCAPERQ9BY12 1400 aa17.74■□□□□ 0.43
YBX3-213ENST00000542641 HNRNPMP52272 730 aaKnown RBP eCLIP17.74■□□□□ 0.434e-7■■■■■ 27.2
YBX3-213ENST00000542641 FAM50AQ14320 339 aaKnown RBP17.74■□□□□ 0.43
YBX3-213ENST00000542641 CAMSAP2Q08AD1 1489 aa17.73■□□□□ 0.43
YBX3-213ENST00000542641 PLEKHH2Q8IVE3 1493 aa17.73■□□□□ 0.43
YBX3-213ENST00000542641 SAMD9LQ8IVG5 1584 aa17.73■□□□□ 0.43
YBX3-213ENST00000542641 KIAA1107Q9UPP5 1409 aa17.72■□□□□ 0.43
YBX3-213ENST00000542641 RAPGEF3O95398 923 aa17.71■□□□□ 0.43
YBX3-213ENST00000542641 PTPN23Q9H3S7 1636 aa17.71■□□□□ 0.43
YBX3-213ENST00000542641 DENND4BO75064 1496 aaPredicted RBP17.7■□□□□ 0.42
YBX3-213ENST00000542641 ABCC1P33527 1531 aa17.7■□□□□ 0.42
YBX3-213ENST00000542641 TCOF1Q13428 1488 aaKnown RBP17.69■□□□□ 0.42
YBX3-213ENST00000542641 ARHGEF12Q9NZN5 1544 aa17.69■□□□□ 0.42
YBX3-213ENST00000542641 RSPH4AQ5TD94 716 aa17.69■□□□□ 0.42
YBX3-213ENST00000542641 AFAP1Q8N556 730 aa17.69■□□□□ 0.42
YBX3-213ENST00000542641 RRBP1Q9P2E9 1410 aaKnown RBP17.69■□□□□ 0.42
YBX3-213ENST00000542641 COL17A1Q9UMD9 1497 aaPredicted RBP17.69■□□□□ 0.42
YBX3-213ENST00000542641 SYCP2Q9BX26 1530 aa17.68■□□□□ 0.42
YBX3-213ENST00000542641 TRAPPC8Q9Y2L5 1435 aa17.67■□□□□ 0.42
YBX3-213ENST00000542641 MBD5Q9P267 1494 aa17.67■□□□□ 0.42
YBX3-213ENST00000542641 KDM6BO15054 1643 aa17.65■□□□□ 0.42
YBX3-213ENST00000542641 POGZQ7Z3K3 1410 aa17.65■□□□□ 0.42
YBX3-213ENST00000542641 ZNF518AQ6AHZ1 1483 aa17.65■□□□□ 0.42
YBX3-213ENST00000542641 MAPK8IP2Q13387 824 aaPredicted RBP17.65■□□□□ 0.42
YBX3-213ENST00000542641 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.65■□□□□ 0.42
YBX3-213ENST00000542641 TSPY4P0CV99 314 aa17.64■□□□□ 0.41
YBX3-213ENST00000542641 TSPY10P0CW01 314 aa17.64■□□□□ 0.41
YBX3-213ENST00000542641 ITGAEP38570 1179 aa17.63■□□□□ 0.41
YBX3-213ENST00000542641 MYT1LQ9UL68 1186 aa17.63■□□□□ 0.41
YBX3-213ENST00000542641 CCDC141Q6ZP82 1450 aa17.63■□□□□ 0.41
YBX3-213ENST00000542641 SPAG9O60271 1321 aaKnown RBP17.62■□□□□ 0.41
YBX3-213ENST00000542641 ARHGEF5Q12774 1597 aa17.62■□□□□ 0.41
YBX3-213ENST00000542641 ABCC5O15440 1437 aa17.6■□□□□ 0.41
YBX3-213ENST00000542641 DAPK1P53355 1430 aa17.6■□□□□ 0.41
YBX3-213ENST00000542641 RICTORQ6R327 1708 aa17.59■□□□□ 0.41
YBX3-213ENST00000542641 FRMPD1Q5SYB0 1578 aa17.58■□□□□ 0.41
YBX3-213ENST00000542641 CHIC2Q9UKJ5 165 aa17.58■□□□□ 0.4
YBX3-213ENST00000542641 KDM5CP41229 1560 aa17.57■□□□□ 0.4
YBX3-213ENST00000542641 DNMT1P26358 1616 aaKnown RBP17.57■□□□□ 0.4
YBX3-213ENST00000542641 C9orf84Q5VXU9 1444 aa17.56■□□□□ 0.4
YBX3-213ENST00000542641 MLH3Q9UHC1 1453 aa17.56■□□□□ 0.4
YBX3-213ENST00000542641 ZMYM4Q5VZL5 1548 aa17.55■□□□□ 0.4
YBX3-213ENST00000542641 MAGI2Q86UL8 1455 aa17.55■□□□□ 0.4
YBX3-213ENST00000542641 RTEL1-TNFRSF6BF6WH68 1400 aa17.55■□□□□ 0.4
YBX3-213ENST00000542641 PTPRKQ15262 1439 aa17.54■□□□□ 0.4
YBX3-213ENST00000542641 SHANK2Q9UPX8 1470 aa17.53■□□□□ 0.4
YBX3-213ENST00000542641 TRIM26Q12899 539 aaPredicted RBP17.53■□□□□ 0.4
YBX3-213ENST00000542641 HECW2Q9P2P5 1572 aa17.53■□□□□ 0.4
YBX3-213ENST00000542641 YEATS2Q9ULM3 1422 aa17.52■□□□□ 0.4
YBX3-213ENST00000542641 ATP7AQ04656 1500 aa17.52■□□□□ 0.39
YBX3-213ENST00000542641 NCBP3Q53F19 620 aaKnown RBP17.51■□□□□ 0.39
YBX3-213ENST00000542641 RRP7BPQ9NSQ0 103 aa17.51■□□□□ 0.39
YBX3-213ENST00000542641 ZFYVE16Q7Z3T8 1539 aa17.51■□□□□ 0.39
YBX3-213ENST00000542641 MAST1Q9Y2H9 1570 aa17.5■□□□□ 0.39
YBX3-213ENST00000542641 CROCC2H7BZ55 1655 aa17.5■□□□□ 0.39
YBX3-213ENST00000542641 ANKRD30AQ9BXX3 1397 aa17.5■□□□□ 0.39
YBX3-213ENST00000542641 INO80Q9ULG1 1556 aaPredicted RBP17.49■□□□□ 0.39
YBX3-213ENST00000542641 KIDINS220Q9ULH0 1771 aa17.49■□□□□ 0.39
YBX3-213ENST00000542641 KCNA4P22459 653 aa17.49■□□□□ 0.39
YBX3-213ENST00000542641 NCOA1Q15788 1441 aa17.48■□□□□ 0.39
YBX3-213ENST00000542641 CNKSR2Q8WXI2 1034 aa17.48■□□□□ 0.39
YBX3-213ENST00000542641 ROCK1Q13464 1354 aa17.47■□□□□ 0.39
YBX3-213ENST00000542641 ATP10AO60312 1499 aa17.47■□□□□ 0.39
YBX3-213ENST00000542641 ADGRL2O95490 1459 aa17.46■□□□□ 0.39
YBX3-213ENST00000542641 KIF15Q9NS87 1388 aa17.46■□□□□ 0.39
YBX3-213ENST00000542641 ARHGEF40Q8TER5 1519 aa17.45■□□□□ 0.38
YBX3-213ENST00000542641 DIP2CQ9Y2E4 1556 aa17.45■□□□□ 0.38
YBX3-213ENST00000542641 ABCA6Q8N139 1617 aa17.44■□□□□ 0.38
YBX3-213ENST00000542641 DMRT2Q9Y5R5 561 aa17.44■□□□□ 0.38
YBX3-213ENST00000542641 A2MP01023 1474 aa17.44■□□□□ 0.38
YBX3-213ENST00000542641 DHX29Q7Z478 1369 aaKnown RBP17.43■□□□□ 0.38
YBX3-213ENST00000542641 PLXNC1O60486 1568 aa17.43■□□□□ 0.38
YBX3-213ENST00000542641 ADGBQ8N7X0 1667 aa17.42■□□□□ 0.38
YBX3-213ENST00000542641 ARID4BQ4LE39 1312 aaPredicted RBP17.41■□□□□ 0.38
YBX3-213ENST00000542641 DUOX2Q9NRD8 1548 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms