RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ARHGAP5Q13017 1502 aa26.46■■□□□ 1.83
LIG1-204ENST00000542460 PREX2Q70Z35 1606 aa26.45■■□□□ 1.82
LIG1-204ENST00000542460 PHLDB1Q86UU1 1377 aa26.44■■□□□ 1.82
LIG1-204ENST00000542460 NEO1Q92859 1461 aa26.44■■□□□ 1.82
LIG1-204ENST00000542460 CDC42BPAQ5VT25 1732 aa26.44■■□□□ 1.82
LIG1-204ENST00000542460 MYOM3Q5VTT5 1437 aa26.44■■□□□ 1.82
LIG1-204ENST00000542460 CDC42BPBQ9Y5S2 1711 aa26.41■■□□□ 1.82
LIG1-204ENST00000542460 ITSN2Q9NZM3 1697 aa26.4■■□□□ 1.82
LIG1-204ENST00000542460 ZNF777Q9ULD5 760 aaPredicted RBP26.4■■□□□ 1.82
LIG1-204ENST00000542460 AKNAQ7Z591 1439 aa26.4■■□□□ 1.82
LIG1-204ENST00000542460 AEBP2Q6ZN18 517 aaPredicted RBP26.39■■□□□ 1.82
LIG1-204ENST00000542460 MIA2Q96PC5 1412 aa26.38■■□□□ 1.81
LIG1-204ENST00000542460 CFAP74Q9C0B2 1584 aa26.38■■□□□ 1.81
LIG1-204ENST00000542460 FGD6Q6ZV73 1430 aa26.33■■□□□ 1.81
LIG1-204ENST00000542460 ADGRL1O94910 1474 aa26.33■■□□□ 1.81
LIG1-204ENST00000542460 ZNF644Q9H582 1327 aaPredicted RBP26.32■■□□□ 1.8
LIG1-204ENST00000542460 SCAPERQ9BY12 1400 aa26.31■■□□□ 1.8
LIG1-204ENST00000542460 PLEKHH2Q8IVE3 1493 aa26.31■■□□□ 1.8
LIG1-204ENST00000542460 SAMD9LQ8IVG5 1584 aa26.29■■□□□ 1.8
LIG1-204ENST00000542460 KIAA1107Q9UPP5 1409 aa26.29■■□□□ 1.8
LIG1-204ENST00000542460 CAMSAP2Q08AD1 1489 aa26.27■■□□□ 1.8
LIG1-204ENST00000542460 COL17A1Q9UMD9 1497 aaPredicted RBP26.27■■□□□ 1.8
LIG1-204ENST00000542460 DENND4BO75064 1496 aaPredicted RBP26.26■■□□□ 1.79
LIG1-204ENST00000542460 ABCC1P33527 1531 aa26.26■■□□□ 1.79
LIG1-204ENST00000542460 HNRNPMP52272 730 aaKnown RBP eCLIP26.25■■□□□ 1.79
LIG1-204ENST00000542460 RAPGEF3O95398 923 aa26.24■■□□□ 1.79
LIG1-204ENST00000542460 ARHGEF12Q9NZN5 1544 aa26.23■■□□□ 1.79
LIG1-204ENST00000542460 TCOF1Q13428 1488 aaKnown RBP26.23■■□□□ 1.79
LIG1-204ENST00000542460 PTPN23Q9H3S7 1636 aa26.23■■□□□ 1.79
LIG1-204ENST00000542460 SYCP2Q9BX26 1530 aa26.21■■□□□ 1.79
LIG1-204ENST00000542460 RSPH4AQ5TD94 716 aa26.21■■□□□ 1.79
LIG1-204ENST00000542460 MBD5Q9P267 1494 aa26.21■■□□□ 1.79
LIG1-204ENST00000542460 POGZQ7Z3K3 1410 aa26.2■■□□□ 1.79
LIG1-204ENST00000542460 FAM50AQ14320 339 aaKnown RBP26.2■■□□□ 1.79
LIG1-204ENST00000542460 AFAP1Q8N556 730 aa26.19■■□□□ 1.78
LIG1-204ENST00000542460 RRBP1Q9P2E9 1410 aaKnown RBP26.19■■□□□ 1.78
LIG1-204ENST00000542460 TRAPPC8Q9Y2L5 1435 aa26.19■■□□□ 1.78
LIG1-204ENST00000542460 ZNF518AQ6AHZ1 1483 aa26.18■■□□□ 1.78
LIG1-204ENST00000542460 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.16■■□□□ 1.78
LIG1-204ENST00000542460 ARHGEF5Q12774 1597 aa26.13■■□□□ 1.77
LIG1-204ENST00000542460 RICTORQ6R327 1708 aa26.13■■□□□ 1.77
LIG1-204ENST00000542460 CCDC141Q6ZP82 1450 aa26.13■■□□□ 1.77
LIG1-204ENST00000542460 FRMPD1Q5SYB0 1578 aa26.13■■□□□ 1.77
LIG1-204ENST00000542460 TSPY4P0CV99 314 aa26.11■■□□□ 1.77
LIG1-204ENST00000542460 TSPY10P0CW01 314 aa26.11■■□□□ 1.77
LIG1-204ENST00000542460 KDM5CP41229 1560 aa26.1■■□□□ 1.77
LIG1-204ENST00000542460 SPAG9O60271 1321 aaKnown RBP26.09■■□□□ 1.77
LIG1-204ENST00000542460 ABCC5O15440 1437 aa26.08■■□□□ 1.77
LIG1-204ENST00000542460 ZMYM4Q5VZL5 1548 aa26.07■■□□□ 1.76
LIG1-204ENST00000542460 MYT1LQ9UL68 1186 aa26.07■■□□□ 1.76
LIG1-204ENST00000542460 MAGI2Q86UL8 1455 aa26.07■■□□□ 1.76
LIG1-204ENST00000542460 DAPK1P53355 1430 aa26.06■■□□□ 1.76
LIG1-204ENST00000542460 MLH3Q9UHC1 1453 aa26.06■■□□□ 1.76
LIG1-204ENST00000542460 DNMT1P26358 1616 aaKnown RBP26.05■■□□□ 1.76
LIG1-204ENST00000542460 KDM4FA0A1W2PPD8 638 aa26.04■■□□□ 1.76
LIG1-204ENST00000542460 RTEL1-TNFRSF6BF6WH68 1400 aa26.03■■□□□ 1.76
LIG1-204ENST00000542460 HECW2Q9P2P5 1572 aa26.01■■□□□ 1.75
LIG1-204ENST00000542460 SHANK2Q9UPX8 1470 aa26■■□□□ 1.75
LIG1-204ENST00000542460 C9orf84Q5VXU9 1444 aa26■■□□□ 1.75
LIG1-204ENST00000542460 ITGAEP38570 1179 aa26■■□□□ 1.75
LIG1-204ENST00000542460 YEATS2Q9ULM3 1422 aa25.99■■□□□ 1.75
LIG1-204ENST00000542460 ATP7AQ04656 1500 aa25.98■■□□□ 1.75
LIG1-204ENST00000542460 ZFYVE16Q7Z3T8 1539 aa25.98■■□□□ 1.75
LIG1-204ENST00000542460 INO80Q9ULG1 1556 aaPredicted RBP25.97■■□□□ 1.75
LIG1-204ENST00000542460 MAST1Q9Y2H9 1570 aa25.97■■□□□ 1.75
LIG1-204ENST00000542460 CHIC2Q9UKJ5 165 aa25.97■■□□□ 1.75
LIG1-204ENST00000542460 PTPRKQ15262 1439 aa25.96■■□□□ 1.75
LIG1-204ENST00000542460 KIDINS220Q9ULH0 1771 aa25.95■■□□□ 1.74
LIG1-204ENST00000542460 CROCC2H7BZ55 1655 aa25.95■■□□□ 1.74
LIG1-204ENST00000542460 ARHGEF40Q8TER5 1519 aa25.92■■□□□ 1.74
LIG1-204ENST00000542460 ANKRD30AQ9BXX3 1397 aa25.92■■□□□ 1.74
LIG1-204ENST00000542460 ATP10AO60312 1499 aa25.92■■□□□ 1.74
LIG1-204ENST00000542460 DIP2CQ9Y2E4 1556 aa25.89■■□□□ 1.74
LIG1-204ENST00000542460 NCOA1Q15788 1441 aa25.89■■□□□ 1.74
LIG1-204ENST00000542460 ADGRL2O95490 1459 aa25.89■■□□□ 1.73
LIG1-204ENST00000542460 ABCA6Q8N139 1617 aa25.89■■□□□ 1.73
LIG1-204ENST00000542460 RRP7BPQ9NSQ0 103 aa25.88■■□□□ 1.73
LIG1-204ENST00000542460 ROCK1Q13464 1354 aa25.88■■□□□ 1.73
LIG1-204ENST00000542460 PLXNC1O60486 1568 aa25.86■■□□□ 1.73
LIG1-204ENST00000542460 KIF15Q9NS87 1388 aa25.85■■□□□ 1.73
LIG1-204ENST00000542460 DHX29Q7Z478 1369 aaKnown RBP25.85■■□□□ 1.73
LIG1-204ENST00000542460 A2MP01023 1474 aa25.84■■□□□ 1.73
LIG1-204ENST00000542460 TRIM26Q12899 539 aaPredicted RBP25.84■■□□□ 1.73
LIG1-204ENST00000542460 REREQ9P2R6 1566 aa25.82■■□□□ 1.72
LIG1-204ENST00000542460 ADGBQ8N7X0 1667 aa25.82■■□□□ 1.72
LIG1-204ENST00000542460 DUOX2Q9NRD8 1548 aa25.79■■□□□ 1.72
LIG1-204ENST00000542460 ARID4BQ4LE39 1312 aaPredicted RBP25.78■■□□□ 1.72
LIG1-204ENST00000542460 AGLP35573 1532 aa25.75■■□□□ 1.71
LIG1-204ENST00000542460 ERBINQ96RT1 1412 aa25.74■■□□□ 1.71
LIG1-204ENST00000542460 HFM1A2PYH4 1435 aa25.73■■□□□ 1.71
LIG1-204ENST00000542460 ANKRD50Q9ULJ7 1429 aa25.73■■□□□ 1.71
LIG1-204ENST00000542460 NAIPQ13075 1403 aa25.72■■□□□ 1.71
LIG1-204ENST00000542460 KIF3BO15066 747 aa25.72■■□□□ 1.71
LIG1-204ENST00000542460 SIGLEC1Q9BZZ2 1709 aa25.7■■□□□ 1.7
LIG1-204ENST00000542460 MLECQ14165 292 aa25.67■■□□□ 1.7
LIG1-204ENST00000542460 EIF2AK4Q9P2K8 1649 aaKnown RBP25.66■■□□□ 1.7
LIG1-204ENST00000542460 GGT6Q6P531 493 aa25.66■■□□□ 1.7
LIG1-204ENST00000542460 BCORL1Q5H9F3 1711 aa25.63■■□□□ 1.69
LIG1-204ENST00000542460 GCC2Q8IWJ2 1684 aa25.62■■□□□ 1.69
LIG1-204ENST00000542460 SETD5Q9C0A6 1442 aa25.62■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms