RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 NEO1Q92859 1461 aa29.01■■■□□ 2.23
TNFRSF1A-213ENST00000540022 FGD6Q6ZV73 1430 aa29■■■□□ 2.23
TNFRSF1A-213ENST00000540022 CFDP1Q9UEE9 299 aaPredicted RBP28.99■■■□□ 2.23
TNFRSF1A-213ENST00000540022 RRBP1Q9P2E9 1410 aaKnown RBP28.98■■■□□ 2.23
TNFRSF1A-213ENST00000540022 MIA2Q96PC5 1412 aa28.97■■■□□ 2.23
TNFRSF1A-213ENST00000540022 CDC42BPAQ5VT25 1732 aa28.96■■■□□ 2.23
TNFRSF1A-213ENST00000540022 MYO5CQ9NQX4 1742 aa28.96■■■□□ 2.23
TNFRSF1A-213ENST00000540022 KDM4FA0A1W2PPD8 638 aa28.95■■■□□ 2.23
TNFRSF1A-213ENST00000540022 PREX2Q70Z35 1606 aa28.95■■■□□ 2.22
TNFRSF1A-213ENST00000540022 FANCAO15360 1455 aa28.94■■■□□ 2.22
TNFRSF1A-213ENST00000540022 ITSN2Q9NZM3 1697 aa28.94■■■□□ 2.22
TNFRSF1A-213ENST00000540022 CDC42BPBQ9Y5S2 1711 aa28.93■■■□□ 2.22
TNFRSF1A-213ENST00000540022 ARHGAP5Q13017 1502 aa28.92■■■□□ 2.22
TNFRSF1A-213ENST00000540022 CFAP74Q9C0B2 1584 aa28.91■■■□□ 2.22
TNFRSF1A-213ENST00000540022 ZNF644Q9H582 1327 aaPredicted RBP28.91■■■□□ 2.22
TNFRSF1A-213ENST00000540022 TRIM26Q12899 539 aaPredicted RBP28.9■■■□□ 2.22
TNFRSF1A-213ENST00000540022 EFCAB2Q5VUJ9 269 aa28.9■■■□□ 2.22
TNFRSF1A-213ENST00000540022 ZNF777Q9ULD5 760 aaPredicted RBP28.9■■■□□ 2.22
TNFRSF1A-213ENST00000540022 FRMPD1Q5SYB0 1578 aa28.89■■■□□ 2.22
TNFRSF1A-213ENST00000540022 FAM50AQ14320 339 aaKnown RBP28.88■■■□□ 2.21
TNFRSF1A-213ENST00000540022 AKNAQ7Z591 1439 aa28.88■■■□□ 2.21
TNFRSF1A-213ENST00000540022 TCOF1Q13428 1488 aaKnown RBP28.87■■■□□ 2.21
TNFRSF1A-213ENST00000540022 PTPN23Q9H3S7 1636 aa28.87■■■□□ 2.21
TNFRSF1A-213ENST00000540022 RAPGEF3O95398 923 aa28.86■■■□□ 2.21
TNFRSF1A-213ENST00000540022 RICTORQ6R327 1708 aa28.85■■■□□ 2.21
TNFRSF1A-213ENST00000540022 ADGRL1O94910 1474 aa28.85■■■□□ 2.21
TNFRSF1A-213ENST00000540022 CAMSAP2Q08AD1 1489 aa28.84■■■□□ 2.21
TNFRSF1A-213ENST00000540022 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.82■■■□□ 2.2
TNFRSF1A-213ENST00000540022 SAMD9LQ8IVG5 1584 aa28.81■■■□□ 2.2
TNFRSF1A-213ENST00000540022 DENND4BO75064 1496 aaPredicted RBP28.79■■■□□ 2.2
TNFRSF1A-213ENST00000540022 ARHGEF12Q9NZN5 1544 aa28.78■■■□□ 2.2
TNFRSF1A-213ENST00000540022 SCAPERQ9BY12 1400 aa28.78■■■□□ 2.2
TNFRSF1A-213ENST00000540022 HNRNPMP52272 730 aaKnown RBP eCLIP28.74■■■□□ 2.19
TNFRSF1A-213ENST00000540022 ABCC1P33527 1531 aa28.74■■■□□ 2.19
TNFRSF1A-213ENST00000540022 PLEKHH2Q8IVE3 1493 aa28.73■■■□□ 2.19
TNFRSF1A-213ENST00000540022 KIAA1107Q9UPP5 1409 aa28.73■■■□□ 2.19
TNFRSF1A-213ENST00000540022 MBD5Q9P267 1494 aa28.72■■■□□ 2.19
TNFRSF1A-213ENST00000540022 SYCP2Q9BX26 1530 aa28.72■■■□□ 2.19
TNFRSF1A-213ENST00000540022 ITGAEP38570 1179 aa28.71■■■□□ 2.19
TNFRSF1A-213ENST00000540022 TRAPPC8Q9Y2L5 1435 aa28.7■■■□□ 2.19
TNFRSF1A-213ENST00000540022 ZMYM4Q5VZL5 1548 aa28.7■■■□□ 2.19
TNFRSF1A-213ENST00000540022 ARHGEF40Q8TER5 1519 aa28.69■■■□□ 2.18
TNFRSF1A-213ENST00000540022 AFAP1Q8N556 730 aa28.69■■■□□ 2.18
TNFRSF1A-213ENST00000540022 PCGF6Q9BYE7 350 aa28.69■■■□□ 2.18
TNFRSF1A-213ENST00000540022 ABCC5O15440 1437 aa28.68■■■□□ 2.18
TNFRSF1A-213ENST00000540022 POGZQ7Z3K3 1410 aa28.67■■■□□ 2.18
TNFRSF1A-213ENST00000540022 DAPK1P53355 1430 aa28.67■■■□□ 2.18
TNFRSF1A-213ENST00000540022 PTPRKQ15262 1439 aa28.66■■■□□ 2.18
TNFRSF1A-213ENST00000540022 ARHGEF5Q12774 1597 aa28.64■■■□□ 2.18
TNFRSF1A-213ENST00000540022 DNMT1P26358 1616 aaKnown RBP28.64■■■□□ 2.18
TNFRSF1A-213ENST00000540022 RSPH4AQ5TD94 716 aa28.64■■■□□ 2.17
TNFRSF1A-213ENST00000540022 CCDC141Q6ZP82 1450 aa28.62■■■□□ 2.17
TNFRSF1A-213ENST00000540022 ZFYVE16Q7Z3T8 1539 aa28.6■■■□□ 2.17
TNFRSF1A-213ENST00000540022 YEATS2Q9ULM3 1422 aa28.59■■■□□ 2.17
TNFRSF1A-213ENST00000540022 ZNF518AQ6AHZ1 1483 aa28.59■■■□□ 2.17
TNFRSF1A-213ENST00000540022 MAGI2Q86UL8 1455 aa28.59■■■□□ 2.17
TNFRSF1A-213ENST00000540022 ADAMTSL3P82987 1691 aa28.57■■■□□ 2.16
TNFRSF1A-213ENST00000540022 BCORL1Q5H9F3 1711 aa28.57■■■□□ 2.16
TNFRSF1A-213ENST00000540022 CHIC2Q9UKJ5 165 aa28.57■■■□□ 2.16
TNFRSF1A-213ENST00000540022 SIGLEC1Q9BZZ2 1709 aa28.56■■■□□ 2.16
TNFRSF1A-213ENST00000540022 TSPY4P0CV99 314 aa28.56■■■□□ 2.16
TNFRSF1A-213ENST00000540022 TSPY10P0CW01 314 aa28.56■■■□□ 2.16
TNFRSF1A-213ENST00000540022 KDM5CP41229 1560 aa28.55■■■□□ 2.16
TNFRSF1A-213ENST00000540022 SHANK2Q9UPX8 1470 aa28.53■■■□□ 2.16
TNFRSF1A-213ENST00000540022 C9orf84Q5VXU9 1444 aa28.53■■■□□ 2.16
TNFRSF1A-213ENST00000540022 CROCC2H7BZ55 1655 aa28.51■■■□□ 2.15
TNFRSF1A-213ENST00000540022 SPAG9O60271 1321 aaKnown RBP28.5■■■□□ 2.15
TNFRSF1A-213ENST00000540022 ARID4BQ4LE39 1312 aaPredicted RBP28.49■■■□□ 2.15
TNFRSF1A-213ENST00000540022 MYT1LQ9UL68 1186 aa28.48■■■□□ 2.15
TNFRSF1A-213ENST00000540022 HECW2Q9P2P5 1572 aa28.47■■■□□ 2.15
TNFRSF1A-213ENST00000540022 MLH3Q9UHC1 1453 aa28.47■■■□□ 2.15
TNFRSF1A-213ENST00000540022 MAST1Q9Y2H9 1570 aa28.47■■■□□ 2.15
TNFRSF1A-213ENST00000540022 MADDQ8WXG6 1647 aa28.46■■■□□ 2.15
TNFRSF1A-213ENST00000540022 ADGRL2O95490 1459 aa28.46■■■□□ 2.15
TNFRSF1A-213ENST00000540022 ROCK1Q13464 1354 aa28.46■■■□□ 2.15
TNFRSF1A-213ENST00000540022 RRP7BPQ9NSQ0 103 aa28.45■■■□□ 2.15
TNFRSF1A-213ENST00000540022 RTEL1-TNFRSF6BF6WH68 1400 aa28.44■■■□□ 2.14
TNFRSF1A-213ENST00000540022 NCOA1Q15788 1441 aa28.44■■■□□ 2.14
TNFRSF1A-213ENST00000540022 ATP10AO60312 1499 aa28.43■■■□□ 2.14
TNFRSF1A-213ENST00000540022 KIDINS220Q9ULH0 1771 aa28.43■■■□□ 2.14
TNFRSF1A-213ENST00000540022 ANKRD30AQ9BXX3 1397 aa28.43■■■□□ 2.14
TNFRSF1A-213ENST00000540022 INO80Q9ULG1 1556 aaPredicted RBP28.42■■■□□ 2.14
TNFRSF1A-213ENST00000540022 ATP7AQ04656 1500 aa28.41■■■□□ 2.14
TNFRSF1A-213ENST00000540022 DIP2CQ9Y2E4 1556 aa28.41■■■□□ 2.14
TNFRSF1A-213ENST00000540022 PTPRMP28827 1452 aa28.4■■■□□ 2.14
TNFRSF1A-213ENST00000540022 ABCA6Q8N139 1617 aa28.4■■■□□ 2.14
TNFRSF1A-213ENST00000540022 HFM1A2PYH4 1435 aa28.4■■■□□ 2.14
TNFRSF1A-213ENST00000540022 NAIPQ13075 1403 aa28.38■■■□□ 2.13
TNFRSF1A-213ENST00000540022 RIMS1Q86UR5 1692 aaKnown RBP28.38■■■□□ 2.13
TNFRSF1A-213ENST00000540022 ADGBQ8N7X0 1667 aa28.38■■■□□ 2.13
TNFRSF1A-213ENST00000540022 KIF15Q9NS87 1388 aa28.36■■■□□ 2.13
TNFRSF1A-213ENST00000540022 PLXNC1O60486 1568 aa28.34■■■□□ 2.13
TNFRSF1A-213ENST00000540022 SETD5Q9C0A6 1442 aa28.34■■■□□ 2.13
TNFRSF1A-213ENST00000540022 REREQ9P2R6 1566 aa28.33■■■□□ 2.13
TNFRSF1A-213ENST00000540022 FER1L4A9Z1Z3 1794 aa28.33■■■□□ 2.13
TNFRSF1A-213ENST00000540022 MLECQ14165 292 aa28.28■■■□□ 2.12
TNFRSF1A-213ENST00000540022 RAB3GAP2Q9H2M9 1393 aa28.28■■■□□ 2.12
TNFRSF1A-213ENST00000540022 GCC2Q8IWJ2 1684 aa28.28■■■□□ 2.12
TNFRSF1A-213ENST00000540022 ANKRD50Q9ULJ7 1429 aa28.27■■■□□ 2.12
TNFRSF1A-213ENST00000540022 DUOX2Q9NRD8 1548 aa28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms