RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 CARMIL2Q6F5E8 1435 aa19.54■□□□□ 0.72
LIG1-203ENST00000536218 HIRIP3Q9BW71 556 aaPredicted RBP19.53■□□□□ 0.72
LIG1-203ENST00000536218 PRG4Q92954 1404 aaPredicted RBP19.52■□□□□ 0.72
LIG1-203ENST00000536218 ARHGEF11O15085 1522 aa19.52■□□□□ 0.71
LIG1-203ENST00000536218 MYT1LQ9UL68 1186 aa19.5■□□□□ 0.71
LIG1-203ENST00000536218 NUP160Q12769 1436 aa19.5■□□□□ 0.71
LIG1-203ENST00000536218 RAPGEF6Q8TEU7 1601 aa19.49■□□□□ 0.71
LIG1-203ENST00000536218 CFDP1Q9UEE9 299 aaPredicted RBP19.48■□□□□ 0.71
LIG1-203ENST00000536218 FANCIQ9NVI1 1328 aa19.48■□□□□ 0.71
LIG1-203ENST00000536218 UACAQ9BZF9 1416 aa19.46■□□□□ 0.71
LIG1-203ENST00000536218 NBR1Q14596 966 aa19.46■□□□□ 0.71
LIG1-203ENST00000536218 TONSLQ96HA7 1378 aa19.46■□□□□ 0.71
LIG1-203ENST00000536218 FOXD1Q16676 465 aa19.45■□□□□ 0.7
LIG1-203ENST00000536218 MIA2Q96PC5 1412 aa19.45■□□□□ 0.7
LIG1-203ENST00000536218 PLEKHD1A6NEE1 506 aa19.45■□□□□ 0.7
LIG1-203ENST00000536218 PPP1R15AO75807 674 aaPredicted RBP19.45■□□□□ 0.7
LIG1-203ENST00000536218 TCOF1Q13428 1488 aaKnown RBP19.44■□□□□ 0.7
LIG1-203ENST00000536218 TROQ12816 1431 aaPredicted RBP19.41■□□□□ 0.7
LIG1-203ENST00000536218 DDX10Q13206 875 aaKnown RBP19.39■□□□□ 0.69
LIG1-203ENST00000536218 TIMELESSQ9UNS1 1208 aa19.39■□□□□ 0.69
LIG1-203ENST00000536218 RTN4Q9NQC3 1192 aaKnown RBP19.38■□□□□ 0.69
LIG1-203ENST00000536218 MPHOSPH9Q99550 1183 aa19.38■□□□□ 0.69
LIG1-203ENST00000536218 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.38■□□□□ 0.69
LIG1-203ENST00000536218 PTPRGP23470 1445 aa19.37■□□□□ 0.69
LIG1-203ENST00000536218 DAPK1P53355 1430 aa19.37■□□□□ 0.69
LIG1-203ENST00000536218 ABCC5O15440 1437 aa19.36■□□□□ 0.69
LIG1-203ENST00000536218 IRX6P78412 446 aaPredicted RBP19.36■□□□□ 0.69
LIG1-203ENST00000536218 KDM6BO15054 1643 aa19.35■□□□□ 0.69
LIG1-203ENST00000536218 ATP10BO94823 1461 aa19.33■□□□□ 0.68
LIG1-203ENST00000536218 GPATCH8Q9UKJ3 1502 aaKnown RBP19.32■□□□□ 0.68
LIG1-203ENST00000536218 KIF14Q15058 1648 aa19.31■□□□□ 0.68
LIG1-203ENST00000536218 SLC4A1APQ9BWU0 796 aaKnown RBP19.31■□□□□ 0.68
LIG1-203ENST00000536218 CAMSAP2Q08AD1 1489 aa19.28■□□□□ 0.68
LIG1-203ENST00000536218 ERICH6BQ5W0A0 696 aa19.27■□□□□ 0.68
LIG1-203ENST00000536218 IL27Q8NEV9 243 aa19.27■□□□□ 0.68
LIG1-203ENST00000536218 HNRNPMP52272 730 aaKnown RBP eCLIP19.27■□□□□ 0.67
LIG1-203ENST00000536218 ABCA8O94911 1581 aa19.25■□□□□ 0.67
LIG1-203ENST00000536218 AKNAQ7Z591 1439 aa19.25■□□□□ 0.67
LIG1-203ENST00000536218 CHD1O14646 1710 aa19.25■□□□□ 0.67
LIG1-203ENST00000536218 DENND4BO75064 1496 aaPredicted RBP19.25■□□□□ 0.67
LIG1-203ENST00000536218 ROCK1Q13464 1354 aa19.24■□□□□ 0.67
LIG1-203ENST00000536218 L3MBTL2Q969R5 705 aa19.23■□□□□ 0.67
LIG1-203ENST00000536218 GCC2Q8IWJ2 1684 aa19.23■□□□□ 0.67
LIG1-203ENST00000536218 DNMT1P26358 1616 aaKnown RBP19.23■□□□□ 0.67
LIG1-203ENST00000536218 TSPY4P0CV99 314 aa19.22■□□□□ 0.67
LIG1-203ENST00000536218 TSPY10P0CW01 314 aa19.22■□□□□ 0.67
LIG1-203ENST00000536218 UBE2Q2Q8WVN8 375 aa19.22■□□□□ 0.67
LIG1-203ENST00000536218 NOP58Q9Y2X3 529 aaKnown RBP19.2■□□□□ 0.66
LIG1-203ENST00000536218 NCOA1Q15788 1441 aa19.2■□□□□ 0.66
LIG1-203ENST00000536218 RTL5Q5HYW3 569 aaPredicted RBP19.19■□□□□ 0.66
LIG1-203ENST00000536218 ERCC6L2Q5T890 1561 aa19.19■□□□□ 0.66
LIG1-203ENST00000536218 ANKRD30AQ9BXX3 1397 aa19.17■□□□□ 0.66
LIG1-203ENST00000536218 PAK3O75914 559 aaPredicted RBP19.16■□□□□ 0.66
LIG1-203ENST00000536218 PKD2Q13563 968 aa19.15■□□□□ 0.66
LIG1-203ENST00000536218 ITSN2Q9NZM3 1697 aa19.15■□□□□ 0.66
LIG1-203ENST00000536218 ABCC10Q5T3U5 1492 aa19.15■□□□□ 0.66
LIG1-203ENST00000536218 ANKRD30BQ9BXX2 1392 aa19.14■□□□□ 0.65
LIG1-203ENST00000536218 HSPA5P11021 654 aaKnown RBP19.13■□□□□ 0.65
LIG1-203ENST00000536218 ZNF326Q5BKZ1 582 aaKnown RBP19.13■□□□□ 0.65
LIG1-203ENST00000536218 ADCY10Q96PN6 1610 aa19.12■□□□□ 0.65
LIG1-203ENST00000536218 ANKRD50Q9ULJ7 1429 aa19.11■□□□□ 0.65
LIG1-203ENST00000536218 EIF5BO60841 1220 aaKnown RBP19.11■□□□□ 0.65
LIG1-203ENST00000536218 C9orf84Q5VXU9 1444 aa19.1■□□□□ 0.65
LIG1-203ENST00000536218 NUP155O75694 1391 aa19.1■□□□□ 0.65
LIG1-203ENST00000536218 NBPF8Q3BBV2 869 aa19.09■□□□□ 0.65
LIG1-203ENST00000536218 CDC42BPAQ5VT25 1732 aa19.09■□□□□ 0.65
LIG1-203ENST00000536218 KDM5BQ9UGL1 1544 aa19.09■□□□□ 0.65
LIG1-203ENST00000536218 ANP32CO43423 234 aa19.08■□□□□ 0.65
LIG1-203ENST00000536218 EIF4G2P78344 907 aaKnown RBP eCLIP19.08■□□□□ 0.641e-11■■■■■ 55.3
LIG1-203ENST00000536218 PZPP20742 1482 aa19.06■□□□□ 0.64
LIG1-203ENST00000536218 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.06■□□□□ 0.642e-7■■■■□ 24.9
LIG1-203ENST00000536218 KIF15Q9NS87 1388 aa19.05■□□□□ 0.64
LIG1-203ENST00000536218 HNRNPUQ00839 825 aaKnown RBP eCLIP19.03■□□□□ 0.64
LIG1-203ENST00000536218 ADGRL2O95490 1459 aa19.03■□□□□ 0.64
LIG1-203ENST00000536218 RPRD2Q5VT52 1461 aaKnown RBP19.03■□□□□ 0.64
LIG1-203ENST00000536218 B4GALNT3Q6L9W6 998 aa19.02■□□□□ 0.64
LIG1-203ENST00000536218 SHROOM2Q13796 1616 aa19.02■□□□□ 0.64
LIG1-203ENST00000536218 ARHGAP5Q13017 1502 aa19.01■□□□□ 0.63
LIG1-203ENST00000536218 MBD5Q9P267 1494 aa19■□□□□ 0.63
LIG1-203ENST00000536218 WASHC2AQ641Q2 1341 aa19■□□□□ 0.63
LIG1-203ENST00000536218 KDM2AQ9Y2K7 1162 aa19■□□□□ 0.63
LIG1-203ENST00000536218 KIAA1107Q9UPP5 1409 aa19■□□□□ 0.63
LIG1-203ENST00000536218 ABCC2Q92887 1545 aa19■□□□□ 0.63
LIG1-203ENST00000536218 ADGBQ8N7X0 1667 aa18.99■□□□□ 0.63
LIG1-203ENST00000536218 CCER2I3L3R5 266 aa18.98■□□□□ 0.63
LIG1-203ENST00000536218 PPP4R2Q9NY27 417 aa18.98■□□□□ 0.63
LIG1-203ENST00000536218 C11orf95C9JLR9 678 aaPredicted RBP18.98■□□□□ 0.63
LIG1-203ENST00000536218 POLR3GLQ9BT43 218 aa18.98■□□□□ 0.63
LIG1-203ENST00000536218 CROCC2H7BZ55 1655 aa18.97■□□□□ 0.63
LIG1-203ENST00000536218 SAMD9LQ8IVG5 1584 aa18.97■□□□□ 0.63
LIG1-203ENST00000536218 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.96■□□□□ 0.63
LIG1-203ENST00000536218 RSPH4AQ5TD94 716 aa18.96■□□□□ 0.63
LIG1-203ENST00000536218 TTC37Q6PGP7 1564 aa18.96■□□□□ 0.63
LIG1-203ENST00000536218 CCDC141Q6ZP82 1450 aa18.96■□□□□ 0.63
LIG1-203ENST00000536218 CNGB1Q14028 1251 aaPredicted RBP18.95■□□□□ 0.62
LIG1-203ENST00000536218 CDC42BPBQ9Y5S2 1711 aa18.95■□□□□ 0.62
LIG1-203ENST00000536218 SYCP2Q9BX26 1530 aa18.95■□□□□ 0.62
LIG1-203ENST00000536218 EFCAB2Q5VUJ9 269 aa18.94■□□□□ 0.62
LIG1-203ENST00000536218 TEX14Q8IWB6 1497 aa18.94■□□□□ 0.62
LIG1-203ENST00000536218 SHANK2Q9UPX8 1470 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms