RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 POTEB2H3BUK9 544 aa9.93□□□□□ -0.82
CD44-236ENST00000533222 L3MBTL3Q96JM7 780 aaPredicted RBP9.93□□□□□ -0.82
CD44-236ENST00000533222 G3V3G9 751 aa9.92□□□□□ -0.82
CD44-236ENST00000533222 POTEJP0CG39 1038 aa9.92□□□□□ -0.82
CD44-236ENST00000533222 MFSD10Q14728 455 aa9.92□□□□□ -0.82
CD44-236ENST00000533222 PDE4AP27815 886 aa9.91□□□□□ -0.82
CD44-236ENST00000533222 KCNV2Q8TDN2 545 aa9.91□□□□□ -0.82
CD44-236ENST00000533222 C2orf72A6NCS6 295 aa9.9□□□□□ -0.82
CD44-236ENST00000533222 WDR70Q9NW82 654 aa9.9□□□□□ -0.82
CD44-236ENST00000533222 DDX27Q96GQ7 796 aaKnown RBP9.89□□□□□ -0.83
CD44-236ENST00000533222 GPHNQ9NQX3 736 aaPredicted RBP9.89□□□□□ -0.83
CD44-236ENST00000533222 KIF3CO14782 793 aa9.88□□□□□ -0.83
CD44-236ENST00000533222 DSG2Q14126 1118 aa9.88□□□□□ -0.83
CD44-236ENST00000533222 PPP1R15BQ5SWA1 713 aa9.87□□□□□ -0.83
CD44-236ENST00000533222 TMC2Q8TDI7 906 aa9.86□□□□□ -0.83
CD44-236ENST00000533222 C3orf67Q6ZVT6 689 aa9.85□□□□□ -0.83
CD44-236ENST00000533222 E2F4Q16254 413 aa9.84□□□□□ -0.83
CD44-236ENST00000533222 FOXK1P85037 733 aa9.82□□□□□ -0.84
CD44-236ENST00000533222 BCANQ96GW7 911 aa9.82□□□□□ -0.84
CD44-236ENST00000533222 PLPP6Q8IY26 295 aa9.81□□□□□ -0.84
CD44-236ENST00000533222 CAMK2BQ13554 666 aa9.8□□□□□ -0.84
CD44-236ENST00000533222 P3H3Q8IVL6 736 aa9.8□□□□□ -0.84
CD44-236ENST00000533222 EMILIN3Q9NT22 766 aa9.8□□□□□ -0.84
CD44-236ENST00000533222 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.79□□□□□ -0.84
CD44-236ENST00000533222 NBR1Q14596 966 aa9.77□□□□□ -0.85
CD44-236ENST00000533222 DPYSL4O14531 572 aa9.74□□□□□ -0.85
CD44-236ENST00000533222 ARHGEF1Q92888 912 aaKnown RBP9.74□□□□□ -0.85
CD44-236ENST00000533222 UPF1Q92900 1129 aaKnown RBP eCLIP9.73□□□□□ -0.85
CD44-236ENST00000533222 SLAIN1Q8ND83 568 aa9.71□□□□□ -0.86
CD44-236ENST00000533222 SCUBE2Q9NQ36 999 aa9.71□□□□□ -0.86
CD44-236ENST00000533222 SEMA3EO15041 775 aa9.7□□□□□ -0.86
CD44-236ENST00000533222 OTUD5Q96G74 571 aa9.69□□□□□ -0.86
CD44-236ENST00000533222 ARIH1Q9Y4X5 557 aaPredicted RBP9.69□□□□□ -0.86
CD44-236ENST00000533222 OXER1Q8TDS5 423 aa9.68□□□□□ -0.86
CD44-236ENST00000533222 LHX8Q68G74 356 aa9.67□□□□□ -0.86
CD44-236ENST00000533222 MAMSTRQ6ZN01 415 aa9.66□□□□□ -0.86
CD44-236ENST00000533222 HOXB3P14651 431 aaPredicted RBP9.65□□□□□ -0.86
CD44-236ENST00000533222 MLLT3P42568 568 aaPredicted RBP9.64□□□□□ -0.87
CD44-236ENST00000533222 PDIA6Q15084 440 aa9.64□□□□□ -0.87
CD44-236ENST00000533222 TESPA1A2RU30 521 aaPredicted RBP9.63□□□□□ -0.87
CD44-236ENST00000533222 MAP3K9P80192 1104 aa9.62□□□□□ -0.87
CD44-236ENST00000533222 PTCD2Q8WV60 388 aaKnown RBP9.62□□□□□ -0.87
CD44-236ENST00000533222 SLC34A2O95436 690 aa9.61□□□□□ -0.87
CD44-236ENST00000533222 PRKCSHP14314 528 aaPredicted RBP9.6□□□□□ -0.87
CD44-236ENST00000533222 KHSRPQ92945 711 aaKnown RBP eCLIP9.6□□□□□ -0.87
CD44-236ENST00000533222 PCDHGA4Q9Y5G9 962 aa9.6□□□□□ -0.87
CD44-236ENST00000533222 EVI5O60447 810 aa9.58□□□□□ -0.88
CD44-236ENST00000533222 SPDYE16A6NNV3 312 aaPredicted RBP9.57□□□□□ -0.88
CD44-236ENST00000533222 TPRNQ4KMQ1 711 aa9.56□□□□□ -0.88
CD44-236ENST00000533222 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.56□□□□□ -0.88
CD44-236ENST00000533222 DOK7Q18PE1 504 aa9.55□□□□□ -0.88
CD44-236ENST00000533222 ARSIQ5FYB1 569 aa9.55□□□□□ -0.88
CD44-236ENST00000533222 LMOD2Q6P5Q4 547 aa9.55□□□□□ -0.88
CD44-236ENST00000533222 DDX12PQ92771 950 aa9.55□□□□□ -0.88
CD44-236ENST00000533222 KDM4FA0A1W2PPD8 638 aa9.53□□□□□ -0.88
CD44-236ENST00000533222 GRXCR2A6NFK2 248 aa9.53□□□□□ -0.88
CD44-236ENST00000533222 TBC1D12O60347 775 aa9.53□□□□□ -0.88
CD44-236ENST00000533222 NUDT7P0C024 238 aa9.53□□□□□ -0.88
CD44-236ENST00000533222 PRIM1P49642 420 aaKnown RBP9.52□□□□□ -0.89
CD44-236ENST00000533222 RBM26Q5T8P6 1007 aaKnown RBP9.52□□□□□ -0.89
CD44-236ENST00000533222 GPR153Q6NV75 609 aa9.52□□□□□ -0.89
CD44-236ENST00000533222 ZNF710Q8N1W2 664 aa9.51□□□□□ -0.89
CD44-236ENST00000533222 ANO8Q9HCE9 1232 aaPredicted RBP9.49□□□□□ -0.89
CD44-236ENST00000533222 RIMBP2O15034 1052 aa9.48□□□□□ -0.89
CD44-236ENST00000533222 OSBPP22059 807 aa9.48□□□□□ -0.89
CD44-236ENST00000533222 PTGER2P43116 358 aa9.48□□□□□ -0.89
CD44-236ENST00000533222 ZNF316A6NFI3 1004 aaPredicted RBP9.46□□□□□ -0.9
CD44-236ENST00000533222 ZSWIM6Q9HCJ5 1215 aa9.46□□□□□ -0.9
CD44-236ENST00000533222 TULP1O00294 542 aaPredicted RBP9.45□□□□□ -0.9
CD44-236ENST00000533222 SNPHO15079 494 aa9.45□□□□□ -0.9
CD44-236ENST00000533222 SMYD5Q6GMV2 418 aa9.45□□□□□ -0.9
CD44-236ENST00000533222 PCDHGA10Q9Y5H3 936 aa9.45□□□□□ -0.9
CD44-236ENST00000533222 HOXB1P14653 301 aaPredicted RBP9.44□□□□□ -0.9
CD44-236ENST00000533222 LHX6Q9UPM6 363 aa9.44□□□□□ -0.9
CD44-236ENST00000533222 FOSBP53539 338 aa9.42□□□□□ -0.9
CD44-236ENST00000533222 ZNF454Q8N9F8 522 aa9.42□□□□□ -0.9
CD44-236ENST00000533222 ZC3H15Q8WU90 426 aaKnown RBP9.42□□□□□ -0.9
CD44-236ENST00000533222 RBM33Q96EV2 1170 aaKnown RBP9.42□□□□□ -0.9
CD44-236ENST00000533222 JPH4Q96JJ6 628 aa9.42□□□□□ -0.9
CD44-236ENST00000533222 CDHR5Q9HBB8 845 aa9.42□□□□□ -0.9
CD44-236ENST00000533222 GPR37O15354 613 aa9.41□□□□□ -0.9
CD44-236ENST00000533222 ST18O60284 1047 aa9.41□□□□□ -0.9
CD44-236ENST00000533222 PHF14O94880 888 aa9.41□□□□□ -0.9
CD44-236ENST00000533222 GPIHBP1Q8IV16 184 aa9.41□□□□□ -0.9
CD44-236ENST00000533222 EN1Q05925 392 aaPredicted RBP9.39□□□□□ -0.91
CD44-236ENST00000533222 TSR1Q2NL82 804 aaKnown RBP9.39□□□□□ -0.91
CD44-236ENST00000533222 LCE2DQ5TA82 110 aaPredicted RBP9.39□□□□□ -0.91
CD44-236ENST00000533222 MARVELD3Q96A59 401 aa9.39□□□□□ -0.91
CD44-236ENST00000533222 NUTM2FA1L443 756 aa9.38□□□□□ -0.91
CD44-236ENST00000533222 TYW1BQ6NUM6 668 aa9.38□□□□□ -0.91
CD44-236ENST00000533222 FAM163AQ96GL9 167 aaPredicted RBP9.38□□□□□ -0.91
CD44-236ENST00000533222 MAP3K7O43318 606 aa9.37□□□□□ -0.91
CD44-236ENST00000533222 EPAS1Q99814 870 aa9.37□□□□□ -0.91
CD44-236ENST00000533222 ADAM33Q9BZ11 813 aa9.37□□□□□ -0.91
CD44-236ENST00000533222 ZDHHC16Q969W1 377 aa9.35□□□□□ -0.91
CD44-236ENST00000533222 ERICH6Q7L0X2 663 aa9.34□□□□□ -0.91
CD44-236ENST00000533222 ZMYND10O75800 440 aa9.33□□□□□ -0.92
CD44-236ENST00000533222 FECHP22830 423 aa9.32□□□□□ -0.92
CD44-236ENST00000533222 EMP3P54852 163 aa9.32□□□□□ -0.92
CD44-236ENST00000533222 FBXW7Q969H0 707 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms