RNA–Protein interactions for RNA: ENST00000532088.1

COPB1-208, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 3

Gene COPB1, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-208ENST00000532088 CFAP43Q8NDM7 1665 aa19.65■□□□□ 0.74
COPB1-208ENST00000532088 CDK11AQ9UQ88 783 aaPredicted RBP19.64■□□□□ 0.73
COPB1-208ENST00000532088 TIAM1Q13009 1591 aa19.64■□□□□ 0.73
COPB1-208ENST00000532088 WDR7Q9Y4E6 1490 aa19.6■□□□□ 0.73
COPB1-208ENST00000532088 ASXL2Q76L83 1435 aa19.59■□□□□ 0.73
COPB1-208ENST00000532088 PLEKHD1A6NEE1 506 aa19.59■□□□□ 0.73
COPB1-208ENST00000532088 TROQ12816 1431 aaPredicted RBP19.58■□□□□ 0.72
COPB1-208ENST00000532088 ARID3CA6NKF2 412 aa19.56■□□□□ 0.72
COPB1-208ENST00000532088 EHBP1L1Q8N3D4 1523 aa19.56■□□□□ 0.72
COPB1-208ENST00000532088 LRRC9Q6ZRR7 1453 aa19.54■□□□□ 0.72
COPB1-208ENST00000532088 MAGI3Q5TCQ9 1506 aa19.53■□□□□ 0.72
COPB1-208ENST00000532088 ZBTB12Q9Y330 459 aaPredicted RBP19.53■□□□□ 0.72
COPB1-208ENST00000532088 MTUS2Q5JR59 1369 aa19.53■□□□□ 0.72
COPB1-208ENST00000532088 MKRN4PQ13434 485 aaPredicted RBP19.52■□□□□ 0.72
COPB1-208ENST00000532088 ABCC10Q5T3U5 1492 aa19.51■□□□□ 0.71
COPB1-208ENST00000532088 GLI2P10070 1586 aa19.5■□□□□ 0.71
COPB1-208ENST00000532088 KIF14Q15058 1648 aa19.49■□□□□ 0.71
COPB1-208ENST00000532088 DIP2BQ9P265 1576 aa19.47■□□□□ 0.71
COPB1-208ENST00000532088 SUPT6HQ7KZ85 1726 aaKnown RBP19.45■□□□□ 0.7
COPB1-208ENST00000532088 ABCA9Q8IUA7 1624 aa19.45■□□□□ 0.7
COPB1-208ENST00000532088 KANK4Q5T7N3 995 aaPredicted RBP19.45■□□□□ 0.7
COPB1-208ENST00000532088 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.42■□□□□ 0.7
COPB1-208ENST00000532088 KCNH8Q96L42 1107 aa19.41■□□□□ 0.7
COPB1-208ENST00000532088 NCOA2Q15596 1464 aa19.41■□□□□ 0.7
COPB1-208ENST00000532088 ARAP3Q8WWN8 1544 aa19.39■□□□□ 0.69
COPB1-208ENST00000532088 MAP3K4Q9Y6R4 1608 aa19.39■□□□□ 0.69
COPB1-208ENST00000532088 KIF13AQ9H1H9 1805 aa19.39■□□□□ 0.69
COPB1-208ENST00000532088 TTC37Q6PGP7 1564 aa19.38■□□□□ 0.69
COPB1-208ENST00000532088 FAM69CQ0P6D2 419 aa19.37■□□□□ 0.69
COPB1-208ENST00000532088 PLCH2O75038 1416 aa19.34■□□□□ 0.69
COPB1-208ENST00000532088 CD109Q6YHK3 1445 aa19.34■□□□□ 0.69
COPB1-208ENST00000532088 CCNB3Q8WWL7 1395 aa19.34■□□□□ 0.69
COPB1-208ENST00000532088 GPATCH8Q9UKJ3 1502 aaKnown RBP19.34■□□□□ 0.69
COPB1-208ENST00000532088 MYO5CQ9NQX4 1742 aa19.34■□□□□ 0.69
COPB1-208ENST00000532088 ITSN2Q9NZM3 1697 aa19.33■□□□□ 0.69
COPB1-208ENST00000532088 PREX2Q70Z35 1606 aa19.33■□□□□ 0.68
COPB1-208ENST00000532088 MYOM3Q5VTT5 1437 aa19.31■□□□□ 0.68
COPB1-208ENST00000532088 MIA2Q96PC5 1412 aa19.31■□□□□ 0.68
COPB1-208ENST00000532088 CDC42BPAQ5VT25 1732 aa19.31■□□□□ 0.68
COPB1-208ENST00000532088 PHLDB1Q86UU1 1377 aa19.29■□□□□ 0.68
COPB1-208ENST00000532088 TEX14Q8IWB6 1497 aa19.28■□□□□ 0.68
COPB1-208ENST00000532088 CFAP74Q9C0B2 1584 aa19.28■□□□□ 0.68
COPB1-208ENST00000532088 FKBP8Q14318 412 aa19.28■□□□□ 0.68
COPB1-208ENST00000532088 CDC42BPBQ9Y5S2 1711 aa19.27■□□□□ 0.68
COPB1-208ENST00000532088 NEO1Q92859 1461 aa19.26■□□□□ 0.67
COPB1-208ENST00000532088 PPRC1Q5VV67 1664 aaKnown RBP19.26■□□□□ 0.67
COPB1-208ENST00000532088 EFCAB2Q5VUJ9 269 aa19.25■□□□□ 0.67
COPB1-208ENST00000532088 ARHGAP5Q13017 1502 aa19.25■□□□□ 0.67
COPB1-208ENST00000532088 FANCAO15360 1455 aa19.24■□□□□ 0.67
COPB1-208ENST00000532088 CFDP1Q9UEE9 299 aaPredicted RBP19.24■□□□□ 0.67
COPB1-208ENST00000532088 FGD6Q6ZV73 1430 aa19.23■□□□□ 0.67
COPB1-208ENST00000532088 PLEKHH2Q8IVE3 1493 aa19.22■□□□□ 0.67
COPB1-208ENST00000532088 PPARGC1BQ86YN6 1023 aaKnown RBP19.22■□□□□ 0.67
COPB1-208ENST00000532088 TCOF1Q13428 1488 aaKnown RBP19.21■□□□□ 0.67
COPB1-208ENST00000532088 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.2■□□□□ 0.66
COPB1-208ENST00000532088 RRBP1Q9P2E9 1410 aaKnown RBP19.2■□□□□ 0.66
COPB1-208ENST00000532088 KIAA1107Q9UPP5 1409 aa19.19■□□□□ 0.66
COPB1-208ENST00000532088 AKNAQ7Z591 1439 aa19.18■□□□□ 0.66
COPB1-208ENST00000532088 TSPOAP1O95153 1857 aa19.18■□□□□ 0.66
COPB1-208ENST00000532088 SAMD9LQ8IVG5 1584 aa19.18■□□□□ 0.66
COPB1-208ENST00000532088 PTPN23Q9H3S7 1636 aa19.18■□□□□ 0.66
COPB1-208ENST00000532088 ABCC1P33527 1531 aa19.17■□□□□ 0.66
COPB1-208ENST00000532088 CAMSAP2Q08AD1 1489 aa19.16■□□□□ 0.66
COPB1-208ENST00000532088 ADGRL1O94910 1474 aa19.15■□□□□ 0.66
COPB1-208ENST00000532088 SPDYE4A6NLX3 237 aa19.13■□□□□ 0.65
COPB1-208ENST00000532088 RSPH4AQ5TD94 716 aa19.13■□□□□ 0.65
COPB1-208ENST00000532088 ARHGEF5Q12774 1597 aa19.12■□□□□ 0.65
COPB1-208ENST00000532088 MBD5Q9P267 1494 aa19.11■□□□□ 0.65
COPB1-208ENST00000532088 ZNF777Q9ULD5 760 aaPredicted RBP19.11■□□□□ 0.65
COPB1-208ENST00000532088 SCAPERQ9BY12 1400 aa19.1■□□□□ 0.65
COPB1-208ENST00000532088 SYCP2Q9BX26 1530 aa19.1■□□□□ 0.65
COPB1-208ENST00000532088 DENND4BO75064 1496 aaPredicted RBP19.09■□□□□ 0.65
COPB1-208ENST00000532088 ZNF644Q9H582 1327 aaPredicted RBP19.09■□□□□ 0.65
COPB1-208ENST00000532088 ARHGEF12Q9NZN5 1544 aa19.09■□□□□ 0.65
COPB1-208ENST00000532088 POGZQ7Z3K3 1410 aa19.08■□□□□ 0.65
COPB1-208ENST00000532088 ZNF518AQ6AHZ1 1483 aa19.08■□□□□ 0.64
COPB1-208ENST00000532088 CCDC141Q6ZP82 1450 aa19.07■□□□□ 0.64
COPB1-208ENST00000532088 DNMT1P26358 1616 aaKnown RBP19.06■□□□□ 0.64
COPB1-208ENST00000532088 KDM5CP41229 1560 aa19.05■□□□□ 0.64
COPB1-208ENST00000532088 RICTORQ6R327 1708 aa19.05■□□□□ 0.64
COPB1-208ENST00000532088 SHANK2Q9UPX8 1470 aa19.04■□□□□ 0.64
COPB1-208ENST00000532088 FAM50AQ14320 339 aaKnown RBP19.04■□□□□ 0.64
COPB1-208ENST00000532088 DAPK1P53355 1430 aa19.03■□□□□ 0.64
COPB1-208ENST00000532088 TRAPPC8Q9Y2L5 1435 aa19.03■□□□□ 0.64
COPB1-208ENST00000532088 HNRNPMP52272 730 aaKnown RBP eCLIP19.03■□□□□ 0.64
COPB1-208ENST00000532088 ZMYM4Q5VZL5 1548 aa19.03■□□□□ 0.64
COPB1-208ENST00000532088 KDM6BO15054 1643 aa19.03■□□□□ 0.64
COPB1-208ENST00000532088 FRMPD1Q5SYB0 1578 aa19.02■□□□□ 0.64
COPB1-208ENST00000532088 ABCC5O15440 1437 aa19.02■□□□□ 0.64
COPB1-208ENST00000532088 SPDYE2BA6NHP3 402 aa19.02■□□□□ 0.64
COPB1-208ENST00000532088 SPDYE6P0CI01 402 aa19.02■□□□□ 0.64
COPB1-208ENST00000532088 SPDYE2Q495Y8 402 aa19.02■□□□□ 0.64
COPB1-208ENST00000532088 COL17A1Q9UMD9 1497 aaPredicted RBP19.02■□□□□ 0.63
COPB1-208ENST00000532088 MAST1Q9Y2H9 1570 aa19.02■□□□□ 0.63
COPB1-208ENST00000532088 RTEL1-TNFRSF6BF6WH68 1400 aa19.01■□□□□ 0.63
COPB1-208ENST00000532088 MAGI2Q86UL8 1455 aa19.01■□□□□ 0.63
COPB1-208ENST00000532088 CROCC2H7BZ55 1655 aa19.01■□□□□ 0.63
COPB1-208ENST00000532088 MLH3Q9UHC1 1453 aa19■□□□□ 0.63
COPB1-208ENST00000532088 TSPY4P0CV99 314 aa18.98■□□□□ 0.63
COPB1-208ENST00000532088 TSPY10P0CW01 314 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms