RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	GPHN	Q9NQX3	736 aa	Predicted RBP	12	□□□□□ -0.49
CD44-231	ENST00000531110	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	12	□□□□□ -0.49
CD44-231	ENST00000531110	POTEJ	P0CG39	1038 aa		11.99	□□□□□ -0.49
CD44-231	ENST00000531110	MFSD10	Q14728	455 aa		11.99	□□□□□ -0.49
CD44-231	ENST00000531110	NCKAP5L	Q9HCH0	1330 aa		11.99	□□□□□ -0.49
CD44-231	ENST00000531110	KIF3C	O14782	793 aa		11.98	□□□□□ -0.49
CD44-231	ENST00000531110	SCUBE2	Q9NQ36	999 aa		11.98	□□□□□ -0.49
CD44-231	ENST00000531110	TMC2	Q8TDI7	906 aa		11.97	□□□□□ -0.49
CD44-231	ENST00000531110	KDM2A	Q9Y2K7	1162 aa		11.95	□□□□□ -0.5
CD44-231	ENST00000531110	FOXK1	P85037	733 aa		11.93	□□□□□ -0.5
CD44-231	ENST00000531110	LHX8	Q68G74	356 aa		11.93	□□□□□ -0.5
CD44-231	ENST00000531110	TMEM92	Q6UXU6	159 aa		11.92	□□□□□ -0.5
CD44-231	ENST00000531110	DDX27	Q96GQ7	796 aa	Known RBP	11.92	□□□□□ -0.5
CD44-231	ENST00000531110	WDR70	Q9NW82	654 aa		11.92	□□□□□ -0.5
CD44-231	ENST00000531110	C2orf72	A6NCS6	295 aa		11.91	□□□□□ -0.5
CD44-231	ENST00000531110	LARP6	Q9BRS8	491 aa	Known RBP	11.91	□□□□□ -0.5
CD44-231	ENST00000531110	PPP1R15B	Q5SWA1	713 aa		11.88	□□□□□ -0.51
CD44-231	ENST00000531110	DSG2	Q14126	1118 aa		11.86	□□□□□ -0.51
CD44-231	ENST00000531110	P3H3	Q8IVL6	736 aa		11.86	□□□□□ -0.51
CD44-231	ENST00000531110	CAMK2B	Q13554	666 aa		11.85	□□□□□ -0.51
CD44-231	ENST00000531110	OTUD5	Q96G74	571 aa		11.85	□□□□□ -0.51
CD44-231	ENST00000531110	E2F4	Q16254	413 aa		11.83	□□□□□ -0.52
CD44-231	ENST00000531110	SLAIN1	Q8ND83	568 aa		11.83	□□□□□ -0.52
CD44-231	ENST00000531110	PLPP6	Q8IY26	295 aa		11.82	□□□□□ -0.52
CD44-231	ENST00000531110	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.82	□□□□□ -0.52
CD44-231	ENST00000531110	SLC34A2	O95436	690 aa		11.8	□□□□□ -0.52
CD44-231	ENST00000531110	SNPH	O15079	494 aa		11.76	□□□□□ -0.53
CD44-231	ENST00000531110	ARHGEF1	Q92888	912 aa	Known RBP	11.75	□□□□□ -0.53
CD44-231	ENST00000531110	DOK7	Q18PE1	504 aa		11.74	□□□□□ -0.53
CD44-231	ENST00000531110	KCNV2	Q8TDN2	545 aa		11.74	□□□□□ -0.53
CD44-231	ENST00000531110	PTCD2	Q8WV60	388 aa	Known RBP	11.73	□□□□□ -0.53
CD44-231	ENST00000531110	ZSWIM6	Q9HCJ5	1215 aa		11.72	□□□□□ -0.53
CD44-231	ENST00000531110	OXER1	Q8TDS5	423 aa		11.71	□□□□□ -0.53
CD44-231	ENST00000531110	RIMBP2	O15034	1052 aa		11.7	□□□□□ -0.54
CD44-231	ENST00000531110	EMILIN3	Q9NT22	766 aa		11.7	□□□□□ -0.54
CD44-231	ENST00000531110	HOXB3	P14651	431 aa	Predicted RBP	11.69	□□□□□ -0.54
CD44-231	ENST00000531110	TBC1D12	O60347	775 aa		11.68	□□□□□ -0.54
CD44-231	ENST00000531110	SPDYE16	A6NNV3	312 aa	Predicted RBP	11.65	□□□□□ -0.54
CD44-231	ENST00000531110	PDIA6	Q15084	440 aa		11.63	□□□□□ -0.55
CD44-231	ENST00000531110	MAP3K9	P80192	1104 aa		11.62	□□□□□ -0.55
CD44-231	ENST00000531110	PCDHGA4	Q9Y5G9	962 aa		11.62	□□□□□ -0.55
CD44-231	ENST00000531110	DPYSL4	O14531	572 aa		11.61	□□□□□ -0.55
CD44-231	ENST00000531110	ZNF710	Q8N1W2	664 aa		11.61	□□□□□ -0.55
CD44-231	ENST00000531110	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.6	□□□□□ -0.55
CD44-231	ENST00000531110	BCAN	Q96GW7	911 aa		11.6	□□□□□ -0.55
CD44-231	ENST00000531110	GPR153	Q6NV75	609 aa		11.59	□□□□□ -0.55
CD44-231	ENST00000531110	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.59	□□□□□ -0.55
CD44-231	ENST00000531110	KDM4F	A0A1W2PPD8	638 aa		11.58	□□□□□ -0.56
CD44-231	ENST00000531110	NBR1	Q14596	966 aa		11.58	□□□□□ -0.56
CD44-231	ENST00000531110	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.58	□□□□□ -0.56
CD44-231	ENST00000531110	HOXB1	P14653	301 aa	Predicted RBP	11.57	□□□□□ -0.56
CD44-231	ENST00000531110	EVI5	O60447	810 aa		11.55	□□□□□ -0.56
CD44-231	ENST00000531110	PTGER2	P43116	358 aa		11.55	□□□□□ -0.56
CD44-231	ENST00000531110	ARSI	Q5FYB1	569 aa		11.52	□□□□□ -0.57
CD44-231	ENST00000531110	TESPA1	A2RU30	521 aa	Predicted RBP	11.51	□□□□□ -0.57
CD44-231	ENST00000531110	PSD	A5PKW4	1024 aa	Predicted RBP	11.49	□□□□□ -0.57
CD44-231	ENST00000531110	ST18	O60284	1047 aa		11.48	□□□□□ -0.57
CD44-231	ENST00000531110	SMYD5	Q6GMV2	418 aa		11.48	□□□□□ -0.57
CD44-231	ENST00000531110	SEMA3E	O15041	775 aa		11.47	□□□□□ -0.57
CD44-231	ENST00000531110	NUDT7	P0C024	238 aa		11.47	□□□□□ -0.57
CD44-231	ENST00000531110	TULP1	O00294	542 aa	Predicted RBP	11.46	□□□□□ -0.57
CD44-231	ENST00000531110	JPH4	Q96JJ6	628 aa		11.45	□□□□□ -0.58
CD44-231	ENST00000531110	PHF14	O94880	888 aa		11.44	□□□□□ -0.58
CD44-231	ENST00000531110	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
CD44-231	ENST00000531110	EPAS1	Q99814	870 aa		11.44	□□□□□ -0.58
CD44-231	ENST00000531110	FAM163A	Q96GL9	167 aa	Predicted RBP	11.42	□□□□□ -0.58
CD44-231	ENST00000531110	FOSB	P53539	338 aa		11.41	□□□□□ -0.58
CD44-231	ENST00000531110	LCE2D	Q5TA82	110 aa	Predicted RBP	11.41	□□□□□ -0.58
CD44-231	ENST00000531110	FBXW7	Q969H0	707 aa		11.41	□□□□□ -0.58
CD44-231	ENST00000531110	LHX6	Q9UPM6	363 aa		11.4	□□□□□ -0.58
CD44-231	ENST00000531110	MLLT3	P42568	568 aa	Predicted RBP	11.39	□□□□□ -0.59
CD44-231	ENST00000531110	EMP3	P54852	163 aa		11.38	□□□□□ -0.59
CD44-231	ENST00000531110	TYW1B	Q6NUM6	668 aa		11.38	□□□□□ -0.59
CD44-231	ENST00000531110	PPP4R3B	Q5MIZ7	849 aa		11.37	□□□□□ -0.59
CD44-231	ENST00000531110	DDX12P	Q92771	950 aa		11.37	□□□□□ -0.59
CD44-231	ENST00000531110	PCDHGA10	Q9Y5H3	936 aa		11.37	□□□□□ -0.59
CD44-231	ENST00000531110	OSBP	P22059	807 aa		11.36	□□□□□ -0.59
CD44-231	ENST00000531110	GRXCR2	A6NFK2	248 aa		11.35	□□□□□ -0.59
CD44-231	ENST00000531110	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.35	□□□□□ -0.59
CD44-231	ENST00000531110	ZNF454	Q8N9F8	522 aa		11.35	□□□□□ -0.59
CD44-231	ENST00000531110	EN1	Q05925	392 aa	Predicted RBP	11.34	□□□□□ -0.59
CD44-231	ENST00000531110	ZDHHC16	Q969W1	377 aa		11.34	□□□□□ -0.59
CD44-231	ENST00000531110	ERBB3	P21860	1342 aa		11.34	□□□□□ -0.59
CD44-231	ENST00000531110	MARVELD3	Q96A59	401 aa		11.32	□□□□□ -0.6
CD44-231	ENST00000531110	BCL2L12	Q9HB09	334 aa		11.31	□□□□□ -0.6
CD44-231	ENST00000531110	VARS2	Q5ST30	1063 aa	Known RBP	11.29	□□□□□ -0.6
CD44-231	ENST00000531110	LMOD2	Q6P5Q4	547 aa		11.29	□□□□□ -0.6
CD44-231	ENST00000531110	PBX2	P40425	430 aa		11.28	□□□□□ -0.6
CD44-231	ENST00000531110	ZNF687	Q8N1G0	1237 aa		11.28	□□□□□ -0.6
CD44-231	ENST00000531110	FAM205C	A6NFA0	338 aa		11.27	□□□□□ -0.61
CD44-231	ENST00000531110	HS3ST6	Q96QI5	342 aa		11.27	□□□□□ -0.61
CD44-231	ENST00000531110	MAP3K7	O43318	606 aa		11.26	□□□□□ -0.61
CD44-231	ENST00000531110	CERK	Q8TCT0	537 aa		11.26	□□□□□ -0.61
CD44-231	ENST00000531110	ADAM33	Q9BZ11	813 aa		11.26	□□□□□ -0.61
CD44-231	ENST00000531110	PRIM1	P49642	420 aa	Known RBP	11.25	□□□□□ -0.61
CD44-231	ENST00000531110	PTPRE	P23469	700 aa		11.24	□□□□□ -0.61
CD44-231	ENST00000531110	C6orf132	Q5T0Z8	1188 aa		11.24	□□□□□ -0.61
CD44-231	ENST00000531110	RBM26	Q5T8P6	1007 aa	Known RBP	11.24	□□□□□ -0.61
CD44-231	ENST00000531110	KCNH8	Q96L42	1107 aa		11.24	□□□□□ -0.61
CD44-231	ENST00000531110	GPIHBP1	Q8IV16	184 aa		11.23	□□□□□ -0.61

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