RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 ABCC5O15440 1437 aa27.1■■□□□ 1.93
PCF11-203ENST00000530304 ZNF644Q9H582 1327 aaPredicted RBP27.09■■□□□ 1.93
PCF11-203ENST00000530304 NUP153P49790 1475 aaKnown RBP27.08■■□□□ 1.93
PCF11-203ENST00000530304 DNMT1P26358 1616 aaKnown RBP27.08■■□□□ 1.93
PCF11-203ENST00000530304 HNRNPUQ00839 825 aaKnown RBP eCLIP27.08■■□□□ 1.93
PCF11-203ENST00000530304 ANKRD30BQ9BXX2 1392 aa27.08■■□□□ 1.93
PCF11-203ENST00000530304 RPRD2Q5VT52 1461 aaKnown RBP27.05■■□□□ 1.92
PCF11-203ENST00000530304 RAPGEF6Q8TEU7 1601 aa27.04■■□□□ 1.92
PCF11-203ENST00000530304 CNTLNQ9NXG0 1405 aa27.04■■□□□ 1.92
PCF11-203ENST00000530304 C11orf95C9JLR9 678 aaPredicted RBP27.03■■□□□ 1.92
PCF11-203ENST00000530304 CDK11AQ9UQ88 783 aaPredicted RBP27.03■■□□□ 1.92
PCF11-203ENST00000530304 NCOA1Q15788 1441 aa27.01■■□□□ 1.91
PCF11-203ENST00000530304 NBPF8Q3BBV2 869 aa27.01■■□□□ 1.91
PCF11-203ENST00000530304 GRIN2AQ12879 1464 aa27■■□□□ 1.91
PCF11-203ENST00000530304 SLC4A1APQ9BWU0 796 aaKnown RBP27■■□□□ 1.91
PCF11-203ENST00000530304 CCDC7Q96M83 1385 aa26.99■■□□□ 1.91
PCF11-203ENST00000530304 TEX14Q8IWB6 1497 aa26.99■■□□□ 1.91
PCF11-203ENST00000530304 CCDC184Q52MB2 194 aa26.94■■□□□ 1.9
PCF11-203ENST00000530304 PRG4Q92954 1404 aaPredicted RBP26.94■■□□□ 1.9
PCF11-203ENST00000530304 EIF4G3O43432 1585 aaKnown RBP26.93■■□□□ 1.9
PCF11-203ENST00000530304 PRKRIP1Q9H875 184 aaPredicted RBP26.93■■□□□ 1.9
PCF11-203ENST00000530304 TROQ12816 1431 aaPredicted RBP26.92■■□□□ 1.9
PCF11-203ENST00000530304 CFDP1Q9UEE9 299 aaPredicted RBP26.9■■□□□ 1.9
PCF11-203ENST00000530304 SPATA31E1Q6ZUB1 1445 aa26.9■■□□□ 1.9
PCF11-203ENST00000530304 CAMSAP2Q08AD1 1489 aa26.9■■□□□ 1.9
PCF11-203ENST00000530304 RBM19Q9Y4C8 960 aaKnown RBP26.88■■□□□ 1.89
PCF11-203ENST00000530304 PZPP20742 1482 aa26.88■■□□□ 1.89
PCF11-203ENST00000530304 PLB1Q6P1J6 1458 aa26.86■■□□□ 1.89
PCF11-203ENST00000530304 KIF7Q2M1P5 1343 aa26.86■■□□□ 1.89
PCF11-203ENST00000530304 GPATCH8Q9UKJ3 1502 aaKnown RBP26.86■■□□□ 1.89
PCF11-203ENST00000530304 ANP32EQ9BTT0 268 aa26.86■■□□□ 1.89
PCF11-203ENST00000530304 ITSN2Q9NZM3 1697 aa26.85■■□□□ 1.89
PCF11-203ENST00000530304 CHMP7Q8WUX9 453 aaPredicted RBP26.83■■□□□ 1.89
PCF11-203ENST00000530304 IRX6P78412 446 aaPredicted RBP26.83■■□□□ 1.88
PCF11-203ENST00000530304 POLR1AO95602 1720 aaPredicted RBP26.82■■□□□ 1.88
PCF11-203ENST00000530304 ADGBQ8N7X0 1667 aa26.82■■□□□ 1.88
PCF11-203ENST00000530304 ZNF777Q9ULD5 760 aaPredicted RBP26.82■■□□□ 1.88
PCF11-203ENST00000530304 FAM9BQ8IZU0 186 aa26.82■■□□□ 1.88
PCF11-203ENST00000530304 MRS2Q9HD23 443 aa26.82■■□□□ 1.88
PCF11-203ENST00000530304 CEP170Q5SW79 1584 aa26.82■■□□□ 1.88
PCF11-203ENST00000530304 MAGI1Q96QZ7 1491 aaPredicted RBP26.81■■□□□ 1.88
PCF11-203ENST00000530304 KIF14Q15058 1648 aa26.81■■□□□ 1.88
PCF11-203ENST00000530304 ADCY10Q96PN6 1610 aa26.79■■□□□ 1.88
PCF11-203ENST00000530304 ADGRL2O95490 1459 aa26.79■■□□□ 1.88
PCF11-203ENST00000530304 KIAA1107Q9UPP5 1409 aa26.77■■□□□ 1.88
PCF11-203ENST00000530304 SYNJ2O15056 1496 aa26.77■■□□□ 1.88
PCF11-203ENST00000530304 CROCC2H7BZ55 1655 aa26.76■■□□□ 1.87
PCF11-203ENST00000530304 MBD5Q9P267 1494 aa26.75■■□□□ 1.87
PCF11-203ENST00000530304 FBLN2P98095 1184 aa26.74■■□□□ 1.87
PCF11-203ENST00000530304 ANKRD30AQ9BXX3 1397 aa26.74■■□□□ 1.87
PCF11-203ENST00000530304 PKD2Q13563 968 aa26.73■■□□□ 1.87
PCF11-203ENST00000530304 CARMIL2Q6F5E8 1435 aa26.73■■□□□ 1.87
PCF11-203ENST00000530304 JPH4Q96JJ6 628 aa26.73■■□□□ 1.87
PCF11-203ENST00000530304 ZBED9Q6R2W3 1325 aa26.73■■□□□ 1.87
PCF11-203ENST00000530304 ERICH6BQ5W0A0 696 aa26.72■■□□□ 1.87
PCF11-203ENST00000530304 ERCC6Q03468 1493 aa26.7■■□□□ 1.86
PCF11-203ENST00000530304 ANKRD50Q9ULJ7 1429 aa26.69■■□□□ 1.86
PCF11-203ENST00000530304 ZNF326Q5BKZ1 582 aaKnown RBP26.68■■□□□ 1.86
PCF11-203ENST00000530304 USP47Q96K76 1375 aa26.68■■□□□ 1.86
PCF11-203ENST00000530304 NUP160Q12769 1436 aa26.67■■□□□ 1.86
PCF11-203ENST00000530304 PLEKHD1A6NEE1 506 aa26.66■■□□□ 1.86
PCF11-203ENST00000530304 BCORL1Q5H9F3 1711 aa26.65■■□□□ 1.86
PCF11-203ENST00000530304 DHX29Q7Z478 1369 aaKnown RBP26.64■■□□□ 1.86
PCF11-203ENST00000530304 PPP4R2Q9NY27 417 aa26.64■■□□□ 1.85
PCF11-203ENST00000530304 CDC42BPAQ5VT25 1732 aa26.63■■□□□ 1.85
PCF11-203ENST00000530304 NUP155O75694 1391 aa26.6■■□□□ 1.85
PCF11-203ENST00000530304 KDM5CP41229 1560 aa26.6■■□□□ 1.85
PCF11-203ENST00000530304 POLR3GLQ9BT43 218 aa26.6■■□□□ 1.85
PCF11-203ENST00000530304 ABCC10Q5T3U5 1492 aa26.6■■□□□ 1.85
PCF11-203ENST00000530304 C9orf84Q5VXU9 1444 aa26.6■■□□□ 1.85
PCF11-203ENST00000530304 ABCA8O94911 1581 aa26.6■■□□□ 1.85
PCF11-203ENST00000530304 ATP10BO94823 1461 aa26.59■■□□□ 1.85
PCF11-203ENST00000530304 SHANK2Q9UPX8 1470 aa26.59■■□□□ 1.85
PCF11-203ENST00000530304 ARID4BQ4LE39 1312 aaPredicted RBP26.58■■□□□ 1.84
PCF11-203ENST00000530304 UHRF1BP1Q6BDS2 1440 aa26.57■■□□□ 1.84
PCF11-203ENST00000530304 CNGB1Q14028 1251 aaPredicted RBP26.56■■□□□ 1.84
PCF11-203ENST00000530304 TSPY4P0CV99 314 aa26.55■■□□□ 1.84
PCF11-203ENST00000530304 TSPY10P0CW01 314 aa26.55■■□□□ 1.84
PCF11-203ENST00000530304 RALGAPBQ86X10 1494 aa26.53■■□□□ 1.84
PCF11-203ENST00000530304 KDM5DQ9BY66 1539 aa26.51■■□□□ 1.83
PCF11-203ENST00000530304 CARD11Q9BXL7 1154 aa26.51■■□□□ 1.83
PCF11-203ENST00000530304 ARHGEF12Q9NZN5 1544 aa26.49■■□□□ 1.83
PCF11-203ENST00000530304 HNRNPMP52272 730 aaKnown RBP eCLIP26.49■■□□□ 1.83
PCF11-203ENST00000530304 MSH5O43196 834 aa26.48■■□□□ 1.83
PCF11-203ENST00000530304 B4GALNT3Q6L9W6 998 aa26.48■■□□□ 1.83
PCF11-203ENST00000530304 ROCK2O75116 1388 aaKnown RBP26.48■■□□□ 1.83
PCF11-203ENST00000530304 KIF15Q9NS87 1388 aa26.47■■□□□ 1.83
PCF11-203ENST00000530304 FANCIQ9NVI1 1328 aa26.47■■□□□ 1.83
PCF11-203ENST00000530304 SMG6Q86US8 1419 aaKnown RBP26.47■■□□□ 1.83
PCF11-203ENST00000530304 KDM2AQ9Y2K7 1162 aa26.46■■□□□ 1.83
PCF11-203ENST00000530304 PTPRGP23470 1445 aa26.45■■□□□ 1.82
PCF11-203ENST00000530304 ARHGEF5Q12774 1597 aa26.43■■□□□ 1.82
PCF11-203ENST00000530304 DCAF11Q8TEB1 546 aa26.43■■□□□ 1.82
PCF11-203ENST00000530304 ST20-MTHFSA0A0A6YYL1 179 aa26.42■■□□□ 1.82
PCF11-203ENST00000530304 PNISRQ8TF01 805 aaKnown RBP26.41■■□□□ 1.82
PCF11-203ENST00000530304 NUDCQ9Y266 331 aa26.4■■□□□ 1.82
PCF11-203ENST00000530304 TMC1Q8TDI8 760 aa26.39■■□□□ 1.81
PCF11-203ENST00000530304 CCDC141Q6ZP82 1450 aa26.36■■□□□ 1.81
PCF11-203ENST00000530304 SAMD9LQ8IVG5 1584 aa26.36■■□□□ 1.81
PCF11-203ENST00000530304 CDC42BPBQ9Y5S2 1711 aa26.34■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms