RNA–Protein interactions for RNA: ENST00000528787.1

SSBP3-211, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-211ENST00000528787 CDC42BPAQ5VT25 1732 aa12.14□□□□□ -0.47
SSBP3-211ENST00000528787 TTC37Q6PGP7 1564 aa12.14□□□□□ -0.47
SSBP3-211ENST00000528787 MYOM3Q5VTT5 1437 aa12.14□□□□□ -0.47
SSBP3-211ENST00000528787 RSPH4AQ5TD94 716 aa12.14□□□□□ -0.47
SSBP3-211ENST00000528787 KANK4Q5T7N3 995 aaPredicted RBP12.13□□□□□ -0.47
SSBP3-211ENST00000528787 FANCAO15360 1455 aa12.13□□□□□ -0.47
SSBP3-211ENST00000528787 TSPOAP1O95153 1857 aa12.12□□□□□ -0.47
SSBP3-211ENST00000528787 GPATCH8Q9UKJ3 1502 aaKnown RBP12.11□□□□□ -0.47
SSBP3-211ENST00000528787 CDC42BPBQ9Y5S2 1711 aa12.11□□□□□ -0.47
SSBP3-211ENST00000528787 KIAA1107Q9UPP5 1409 aa12.1□□□□□ -0.47
SSBP3-211ENST00000528787 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.09□□□□□ -0.47
SSBP3-211ENST00000528787 FGD6Q6ZV73 1430 aa12.08□□□□□ -0.48
SSBP3-211ENST00000528787 AKNAQ7Z591 1439 aa12.07□□□□□ -0.48
SSBP3-211ENST00000528787 ADGRL1O94910 1474 aa12.07□□□□□ -0.48
SSBP3-211ENST00000528787 ZNF777Q9ULD5 760 aaPredicted RBP12.06□□□□□ -0.48
SSBP3-211ENST00000528787 PTPN23Q9H3S7 1636 aa12.06□□□□□ -0.48
SSBP3-211ENST00000528787 PPRC1Q5VV67 1664 aaKnown RBP12.06□□□□□ -0.48
SSBP3-211ENST00000528787 ZNF518AQ6AHZ1 1483 aa12.05□□□□□ -0.48
SSBP3-211ENST00000528787 DENND4BO75064 1496 aaPredicted RBP12.04□□□□□ -0.48
SSBP3-211ENST00000528787 CAMSAP2Q08AD1 1489 aa12.04□□□□□ -0.48
SSBP3-211ENST00000528787 TCOF1Q13428 1488 aaKnown RBP12.04□□□□□ -0.48
SSBP3-211ENST00000528787 TSPY4P0CV99 314 aa12.04□□□□□ -0.48
SSBP3-211ENST00000528787 TSPY10P0CW01 314 aa12.04□□□□□ -0.48
SSBP3-211ENST00000528787 ABCC1P33527 1531 aa12.04□□□□□ -0.48
SSBP3-211ENST00000528787 ARHGEF5Q12774 1597 aa12.04□□□□□ -0.48
SSBP3-211ENST00000528787 RRBP1Q9P2E9 1410 aaKnown RBP12.03□□□□□ -0.48
SSBP3-211ENST00000528787 SAMD9LQ8IVG5 1584 aa12.03□□□□□ -0.48
SSBP3-211ENST00000528787 KDM6BO15054 1643 aa12.03□□□□□ -0.48
SSBP3-211ENST00000528787 MAGI2Q86UL8 1455 aa12.02□□□□□ -0.48
SSBP3-211ENST00000528787 ACIN1Q9UKV3 1341 aaKnown RBP12.02□□□□□ -0.49
SSBP3-211ENST00000528787 SCAPERQ9BY12 1400 aa12.02□□□□□ -0.49
SSBP3-211ENST00000528787 CCDC141Q6ZP82 1450 aa12.02□□□□□ -0.49
SSBP3-211ENST00000528787 FAM50AQ14320 339 aaKnown RBP12.01□□□□□ -0.49
SSBP3-211ENST00000528787 POGZQ7Z3K3 1410 aa12□□□□□ -0.49
SSBP3-211ENST00000528787 SYCP2Q9BX26 1530 aa12□□□□□ -0.49
SSBP3-211ENST00000528787 PPARGC1BQ86YN6 1023 aaKnown RBP11.99□□□□□ -0.49
SSBP3-211ENST00000528787 SHANK2Q9UPX8 1470 aa11.99□□□□□ -0.49
SSBP3-211ENST00000528787 DNMT1P26358 1616 aaKnown RBP11.99□□□□□ -0.49
SSBP3-211ENST00000528787 RICTORQ6R327 1708 aa11.98□□□□□ -0.49
SSBP3-211ENST00000528787 RTEL1-TNFRSF6BF6WH68 1400 aa11.98□□□□□ -0.49
SSBP3-211ENST00000528787 MYT1LQ9UL68 1186 aa11.98□□□□□ -0.49
SSBP3-211ENST00000528787 ZMYM4Q5VZL5 1548 aa11.97□□□□□ -0.49
SSBP3-211ENST00000528787 SPAG9O60271 1321 aaKnown RBP11.97□□□□□ -0.49
SSBP3-211ENST00000528787 CROCC2H7BZ55 1655 aa11.97□□□□□ -0.49
SSBP3-211ENST00000528787 KDM5CP41229 1560 aa11.96□□□□□ -0.49
SSBP3-211ENST00000528787 HECW2Q9P2P5 1572 aa11.96□□□□□ -0.49
SSBP3-211ENST00000528787 MAST1Q9Y2H9 1570 aa11.96□□□□□ -0.49
SSBP3-211ENST00000528787 MLH3Q9UHC1 1453 aa11.96□□□□□ -0.49
SSBP3-211ENST00000528787 MBD5Q9P267 1494 aa11.95□□□□□ -0.5
SSBP3-211ENST00000528787 DAPK1P53355 1430 aa11.95□□□□□ -0.5
SSBP3-211ENST00000528787 ANKRD30AQ9BXX3 1397 aa11.95□□□□□ -0.5
SSBP3-211ENST00000528787 ADGBQ8N7X0 1667 aa11.95□□□□□ -0.5
SSBP3-211ENST00000528787 HNRNPMP52272 730 aaKnown RBP eCLIP11.95□□□□□ -0.58e-6■■■■□ 19.5
SSBP3-211ENST00000528787 TRIM26Q12899 539 aaPredicted RBP11.94□□□□□ -0.5
SSBP3-211ENST00000528787 ROCK1Q13464 1354 aa11.93□□□□□ -0.5
SSBP3-211ENST00000528787 ZNF644Q9H582 1327 aaPredicted RBP11.93□□□□□ -0.5
SSBP3-211ENST00000528787 ATP7AQ04656 1500 aa11.93□□□□□ -0.5
SSBP3-211ENST00000528787 C9orf84Q5VXU9 1444 aa11.93□□□□□ -0.5
SSBP3-211ENST00000528787 PLXNC1O60486 1568 aa11.92□□□□□ -0.5
SSBP3-211ENST00000528787 ZFYVE16Q7Z3T8 1539 aa11.92□□□□□ -0.5
SSBP3-211ENST00000528787 INO80Q9ULG1 1556 aaPredicted RBP11.92□□□□□ -0.5
SSBP3-211ENST00000528787 AFAP1Q8N556 730 aa11.91□□□□□ -0.5
SSBP3-211ENST00000528787 ABCC5O15440 1437 aa11.91□□□□□ -0.5
SSBP3-211ENST00000528787 TRAPPC8Q9Y2L5 1435 aa11.91□□□□□ -0.5
SSBP3-211ENST00000528787 ARHGEF12Q9NZN5 1544 aa11.91□□□□□ -0.5
SSBP3-211ENST00000528787 ADGRL2O95490 1459 aa11.9□□□□□ -0.5
SSBP3-211ENST00000528787 RAPGEF3O95398 923 aa11.9□□□□□ -0.5
SSBP3-211ENST00000528787 FRMPD1Q5SYB0 1578 aa11.89□□□□□ -0.51
SSBP3-211ENST00000528787 REREQ9P2R6 1566 aa11.89□□□□□ -0.51
SSBP3-211ENST00000528787 ARHGEF40Q8TER5 1519 aa11.89□□□□□ -0.51
SSBP3-211ENST00000528787 KIDINS220Q9ULH0 1771 aa11.88□□□□□ -0.51
SSBP3-211ENST00000528787 DUOX2Q9NRD8 1548 aa11.88□□□□□ -0.51
SSBP3-211ENST00000528787 ATP10AO60312 1499 aa11.88□□□□□ -0.51
SSBP3-211ENST00000528787 NCOA1Q15788 1441 aa11.86□□□□□ -0.51
SSBP3-211ENST00000528787 ERBINQ96RT1 1412 aa11.86□□□□□ -0.51
SSBP3-211ENST00000528787 EIF2AK4Q9P2K8 1649 aaKnown RBP11.86□□□□□ -0.51
SSBP3-211ENST00000528787 ITGAEP38570 1179 aa11.86□□□□□ -0.51
SSBP3-211ENST00000528787 A2MP01023 1474 aa11.85□□□□□ -0.51
SSBP3-211ENST00000528787 COL17A1Q9UMD9 1497 aaPredicted RBP11.85□□□□□ -0.51
SSBP3-211ENST00000528787 KIF15Q9NS87 1388 aa11.85□□□□□ -0.51
SSBP3-211ENST00000528787 PPP6R1Q9UPN7 881 aa11.85□□□□□ -0.51
SSBP3-211ENST00000528787 GCC2Q8IWJ2 1684 aa11.84□□□□□ -0.51
SSBP3-211ENST00000528787 DIP2CQ9Y2E4 1556 aa11.84□□□□□ -0.51
SSBP3-211ENST00000528787 DHX29Q7Z478 1369 aaKnown RBP11.84□□□□□ -0.51
SSBP3-211ENST00000528787 AGLP35573 1532 aa11.84□□□□□ -0.51
SSBP3-211ENST00000528787 FAM135AQ9P2D6 1515 aa11.84□□□□□ -0.51
SSBP3-211ENST00000528787 HFM1A2PYH4 1435 aa11.84□□□□□ -0.51
SSBP3-211ENST00000528787 BCORL1Q5H9F3 1711 aa11.83□□□□□ -0.52
SSBP3-211ENST00000528787 ABCA6Q8N139 1617 aa11.83□□□□□ -0.52
SSBP3-211ENST00000528787 HRCP23327 699 aa11.82□□□□□ -0.52
SSBP3-211ENST00000528787 CHIC2Q9UKJ5 165 aa11.82□□□□□ -0.52
SSBP3-211ENST00000528787 ANKRD50Q9ULJ7 1429 aa11.82□□□□□ -0.52
SSBP3-211ENST00000528787 KANK1Q14678 1352 aa11.81□□□□□ -0.52
SSBP3-211ENST00000528787 ESF1Q9H501 851 aaKnown RBP11.81□□□□□ -0.52
SSBP3-211ENST00000528787 RRP7BPQ9NSQ0 103 aa11.81□□□□□ -0.52
SSBP3-211ENST00000528787 ARID4BQ4LE39 1312 aaPredicted RBP11.8□□□□□ -0.52
SSBP3-211ENST00000528787 SETD5Q9C0A6 1442 aa11.79□□□□□ -0.52
SSBP3-211ENST00000528787 YEATS2Q9ULM3 1422 aa11.79□□□□□ -0.52
SSBP3-211ENST00000528787 ZC3H13Q5T200 1668 aaKnown RBP11.77□□□□□ -0.53
SSBP3-211ENST00000528787 NAIPQ13075 1403 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms