RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 BAZ1BQ9UIG0 1483 aaKnown RBP7.09□□□□□ -1.27
CD44-226ENST00000527889 STK25O00506 426 aa7.07□□□□□ -1.28
CD44-226ENST00000527889 HMGXB3Q12766 1538 aa7.06□□□□□ -1.28
CD44-226ENST00000527889 BCL11BQ9C0K0 894 aaPredicted RBP7.06□□□□□ -1.28
CD44-226ENST00000527889 CCDC88BA6NC98 1476 aa7.05□□□□□ -1.28
CD44-226ENST00000527889 CABP2Q9NPB3 220 aa7.05□□□□□ -1.28
CD44-226ENST00000527889 POTEFA5A3E0 1075 aa7.04□□□□□ -1.28
CD44-226ENST00000527889 FBXO41Q8TF61 875 aa7.04□□□□□ -1.28
CD44-226ENST00000527889 TMEM132AQ24JP5 1023 aa7.03□□□□□ -1.28
CD44-226ENST00000527889 METRNQ9UJH8 293 aa7.03□□□□□ -1.28
CD44-226ENST00000527889 COLQQ9Y215 455 aaPredicted RBP7.03□□□□□ -1.28
CD44-226ENST00000527889 STK24Q9Y6E0 443 aa7.03□□□□□ -1.28
CD44-226ENST00000527889 EFCAB3Q8N7B9 438 aa7.02□□□□□ -1.29
CD44-226ENST00000527889 SLC39A7Q92504 469 aa7.02□□□□□ -1.29
CD44-226ENST00000527889 NCAPD3P42695 1498 aa7.02□□□□□ -1.29
CD44-226ENST00000527889 RIMBP3CA6NJZ7 1639 aa7.01□□□□□ -1.29
CD44-226ENST00000527889 RIMBP3BA6NNM3 1639 aa7.01□□□□□ -1.29
CD44-226ENST00000527889 RIMBP3Q9UFD9 1639 aa7.01□□□□□ -1.29
CD44-226ENST00000527889 ERICH6Q7L0X2 663 aa7.01□□□□□ -1.29
CD44-226ENST00000527889 C7P10643 843 aa7□□□□□ -1.29
CD44-226ENST00000527889 IRX5P78411 483 aaPredicted RBP7□□□□□ -1.29
CD44-226ENST00000527889 IER5LQ5T953 404 aa7□□□□□ -1.29
CD44-226ENST00000527889 RYDENQ9NUL5 291 aaKnown RBP7□□□□□ -1.29
CD44-226ENST00000527889 POTEB2H3BUK9 544 aa6.99□□□□□ -1.29
CD44-226ENST00000527889 MKRN3Q13064 507 aaKnown RBP6.98□□□□□ -1.29
CD44-226ENST00000527889 P3H3Q8IVL6 736 aa6.98□□□□□ -1.29
CD44-226ENST00000527889 PDCD7Q8N8D1 485 aaKnown RBP6.98□□□□□ -1.29
CD44-226ENST00000527889 GOLGA2Q08379 1002 aa6.97□□□□□ -1.29
CD44-226ENST00000527889 ABCC8Q09428 1581 aa6.97□□□□□ -1.29
CD44-226ENST00000527889 ARXQ96QS3 562 aa6.97□□□□□ -1.29
CD44-226ENST00000527889 POTEJP0CG39 1038 aa6.96□□□□□ -1.3
CD44-226ENST00000527889 MS4A4AQ96JQ5 239 aa6.96□□□□□ -1.3
CD44-226ENST00000527889 MFRPQ9BY79 579 aa6.96□□□□□ -1.3
CD44-226ENST00000527889 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.96□□□□□ -1.3
CD44-226ENST00000527889 PHF8Q9UPP1 1060 aa6.96□□□□□ -1.3
CD44-226ENST00000527889 CYB5RLQ6IPT4 315 aa6.95□□□□□ -1.3
CD44-226ENST00000527889 DPY19L2Q6NUT2 758 aa6.95□□□□□ -1.3
CD44-226ENST00000527889 FBXO22Q8NEZ5 403 aa6.95□□□□□ -1.3
CD44-226ENST00000527889 OCEL1Q9H607 264 aa6.95□□□□□ -1.3
CD44-226ENST00000527889 DISP3Q9P2K9 1392 aa6.95□□□□□ -1.3
CD44-226ENST00000527889 SEC24BO95487 1268 aa6.94□□□□□ -1.3
CD44-226ENST00000527889 PLCG2P16885 1265 aa6.94□□□□□ -1.3
CD44-226ENST00000527889 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.94□□□□□ -1.3
CD44-226ENST00000527889 KCNV2Q8TDN2 545 aa6.94□□□□□ -1.3
CD44-226ENST00000527889 SOX12O15370 315 aa6.93□□□□□ -1.3
CD44-226ENST00000527889 LMOD2Q6P5Q4 547 aa6.93□□□□□ -1.3
CD44-226ENST00000527889 CADPS2Q86UW7 1296 aa6.92□□□□□ -1.3
CD44-226ENST00000527889 KIF21AQ7Z4S6 1674 aa6.91□□□□□ -1.3
CD44-226ENST00000527889 LHX8Q68G74 356 aa6.91□□□□□ -1.3
CD44-226ENST00000527889 C14orf37Q86TY3 774 aa6.9□□□□□ -1.3
CD44-226ENST00000527889 SYNJ1O43426 1573 aa6.9□□□□□ -1.31
CD44-226ENST00000527889 NLRP6P59044 892 aa6.89□□□□□ -1.31
CD44-226ENST00000527889 WDR70Q9NW82 654 aa6.89□□□□□ -1.31
CD44-226ENST00000527889 BIVM-ERCC5R4GMW8 1640 aa6.89□□□□□ -1.31
CD44-226ENST00000527889 ARHGEF11O15085 1522 aa6.88□□□□□ -1.31
CD44-226ENST00000527889 KDM4FA0A1W2PPD8 638 aa6.88□□□□□ -1.31
CD44-226ENST00000527889 PPP1R37O75864 691 aa6.88□□□□□ -1.31
CD44-226ENST00000527889 NESP48681 1621 aa6.87□□□□□ -1.31
CD44-226ENST00000527889 BRPF1P55201 1214 aaPredicted RBP6.87□□□□□ -1.31
CD44-226ENST00000527889 DAXXQ9UER7 740 aaPredicted RBP6.87□□□□□ -1.31
CD44-226ENST00000527889 CFTRP13569 1480 aa6.86□□□□□ -1.31
CD44-226ENST00000527889 OTUD5Q96G74 571 aa6.86□□□□□ -1.31
CD44-226ENST00000527889 THOC2Q8NI27 1593 aaKnown RBP6.86□□□□□ -1.31
CD44-226ENST00000527889 LAMC3Q9Y6N6 1575 aa6.86□□□□□ -1.31
CD44-226ENST00000527889 TOP2BQ02880 1626 aa6.85□□□□□ -1.31
CD44-226ENST00000527889 ERCC6L2Q5T890 1561 aa6.84□□□□□ -1.31
CD44-226ENST00000527889 TMEM121BQ9BXQ6 578 aaPredicted RBP6.84□□□□□ -1.31
CD44-226ENST00000527889 BOLA1Q9Y3E2 137 aa6.84□□□□□ -1.31
CD44-226ENST00000527889 MICALL2Q8IY33 904 aa6.83□□□□□ -1.32
CD44-226ENST00000527889 WRNQ14191 1432 aaPredicted RBP eCLIP6.83□□□□□ -1.32
CD44-226ENST00000527889 CADPSQ9ULU8 1353 aa6.82□□□□□ -1.32
CD44-226ENST00000527889 CUX1P39880 1505 aa6.82□□□□□ -1.32
CD44-226ENST00000527889 HOMEZQ8IX15 550 aa6.82□□□□□ -1.32
CD44-226ENST00000527889 ZC3H15Q8WU90 426 aaKnown RBP6.82□□□□□ -1.32
CD44-226ENST00000527889 ARHGEF1Q92888 912 aaKnown RBP6.82□□□□□ -1.32
CD44-226ENST00000527889 L3MBTL3Q96JM7 780 aaPredicted RBP6.82□□□□□ -1.32
CD44-226ENST00000527889 FANCD2Q9BXW9 1451 aa6.8□□□□□ -1.32
CD44-226ENST00000527889 TMEM92Q6UXU6 159 aa6.8□□□□□ -1.32
CD44-226ENST00000527889 TESPA1A2RU30 521 aaPredicted RBP6.78□□□□□ -1.32
CD44-226ENST00000527889 MAMSTRQ6ZN01 415 aa6.78□□□□□ -1.32
CD44-226ENST00000527889 FAM9AQ8IZU1 332 aaPredicted RBP6.78□□□□□ -1.32
CD44-226ENST00000527889 SCUBE2Q9NQ36 999 aa6.78□□□□□ -1.32
CD44-226ENST00000527889 WDR97A6NE52 1622 aa6.78□□□□□ -1.32
CD44-226ENST00000527889 DNMBPQ6XZF7 1577 aa6.78□□□□□ -1.32
CD44-226ENST00000527889 NEUROD2Q15784 382 aa6.77□□□□□ -1.33
CD44-226ENST00000527889 E2F4Q16254 413 aa6.77□□□□□ -1.33
CD44-226ENST00000527889 C3orf67Q6ZVT6 689 aa6.77□□□□□ -1.33
CD44-226ENST00000527889 SLC24A3Q9HC58 644 aa6.77□□□□□ -1.33
CD44-226ENST00000527889 CEP164Q9UPV0 1460 aa6.77□□□□□ -1.33
CD44-226ENST00000527889 RUSC2Q8N2Y8 1516 aa6.76□□□□□ -1.33
CD44-226ENST00000527889 SEMA3EO15041 775 aa6.76□□□□□ -1.33
CD44-226ENST00000527889 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.76□□□□□ -1.33
CD44-226ENST00000527889 ARAP1Q96P48 1450 aa6.76□□□□□ -1.33
CD44-226ENST00000527889 HECW2Q9P2P5 1572 aa6.76□□□□□ -1.33
CD44-226ENST00000527889 G3V3G9 751 aa6.75□□□□□ -1.33
CD44-226ENST00000527889 MYT1Q01538 1121 aa6.75□□□□□ -1.33
CD44-226ENST00000527889 SLAIN1Q8ND83 568 aa6.75□□□□□ -1.33
CD44-226ENST00000527889 URB2Q14146 1524 aaKnown RBP6.75□□□□□ -1.33
CD44-226ENST00000527889 TOPBP1Q92547 1522 aa6.75□□□□□ -1.33
CD44-226ENST00000527889 SOGA1O94964 1423 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms