RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 STK24Q9Y6E0 443 aa10.74□□□□□ -0.69
USP48-211ENST00000526044 HS6ST3Q8IZP7 471 aa10.73□□□□□ -0.69
USP48-211ENST00000526044 HOXB3P14651 431 aaPredicted RBP10.72□□□□□ -0.69
USP48-211ENST00000526044 HOXB1P14653 301 aaPredicted RBP10.72□□□□□ -0.69
USP48-211ENST00000526044 ERBB3P21860 1342 aa10.72□□□□□ -0.69
USP48-211ENST00000526044 EFCAB3Q8N7B9 438 aa10.68□□□□□ -0.7
USP48-211ENST00000526044 DNAJC5Q9H3Z4 198 aa10.65□□□□□ -0.7
USP48-211ENST00000526044 BBXQ8WY36 941 aaPredicted RBP10.62□□□□□ -0.71
USP48-211ENST00000526044 ZSWIM6Q9HCJ5 1215 aa10.62□□□□□ -0.71
USP48-211ENST00000526044 SOX12O15370 315 aa10.61□□□□□ -0.71
USP48-211ENST00000526044 VARS2Q5ST30 1063 aaKnown RBP10.6□□□□□ -0.71
USP48-211ENST00000526044 MICALL2Q8IY33 904 aa10.6□□□□□ -0.71
USP48-211ENST00000526044 RNF166Q96A37 237 aaPredicted RBP10.59□□□□□ -0.71
USP48-211ENST00000526044 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.57□□□□□ -0.72
USP48-211ENST00000526044 NKX1-1Q15270 411 aaPredicted RBP10.56□□□□□ -0.72
USP48-211ENST00000526044 NLRP6P59044 892 aa10.55□□□□□ -0.72
USP48-211ENST00000526044 ZNF687Q8N1G0 1237 aa10.55□□□□□ -0.72
USP48-211ENST00000526044 MFRPQ9BY79 579 aa10.54□□□□□ -0.72
USP48-211ENST00000526044 MYT1LQ9UL68 1186 aa10.54□□□□□ -0.72
USP48-211ENST00000526044 PHF8Q9UPP1 1060 aa10.54□□□□□ -0.72
USP48-211ENST00000526044 RYDENQ9NUL5 291 aaKnown RBP10.53□□□□□ -0.72
USP48-211ENST00000526044 PTGER2P43116 358 aa10.51□□□□□ -0.73
USP48-211ENST00000526044 TMEM92Q6UXU6 159 aa10.51□□□□□ -0.73
USP48-211ENST00000526044 GPR153Q6NV75 609 aa10.5□□□□□ -0.73
USP48-211ENST00000526044 FBXO22Q8NEZ5 403 aa10.5□□□□□ -0.73
USP48-211ENST00000526044 GTPBP6O43824 516 aaPredicted RBP10.48□□□□□ -0.73
USP48-211ENST00000526044 SPRYD3Q8NCJ5 442 aa10.48□□□□□ -0.73
USP48-211ENST00000526044 MS4A4AQ96JQ5 239 aa10.47□□□□□ -0.73
USP48-211ENST00000526044 PAXIP1Q6ZW49 1069 aaPredicted RBP10.46□□□□□ -0.73
USP48-211ENST00000526044 ARSIQ5FYB1 569 aa10.45□□□□□ -0.74
USP48-211ENST00000526044 CFAP44Q96MT7 982 aa10.44□□□□□ -0.74
USP48-211ENST00000526044 ANKRD13DQ6ZTN6 518 aa10.43□□□□□ -0.74
USP48-211ENST00000526044 ZNF316A6NFI3 1004 aaPredicted RBP10.42□□□□□ -0.74
USP48-211ENST00000526044 PPP1R37O75864 691 aa10.39□□□□□ -0.75
USP48-211ENST00000526044 PLCB2Q00722 1185 aa10.39□□□□□ -0.75
USP48-211ENST00000526044 LSM11P83369 360 aaKnown RBP eCLIP10.35□□□□□ -0.75
USP48-211ENST00000526044 KHSRPQ92945 711 aaKnown RBP eCLIP10.35□□□□□ -0.752e-11■■■■□ 23.4
USP48-211ENST00000526044 PBX2P40425 430 aa10.33□□□□□ -0.76
USP48-211ENST00000526044 C2orf72A6NCS6 295 aa10.3□□□□□ -0.76
USP48-211ENST00000526044 NUDT7P0C024 238 aa10.3□□□□□ -0.76
USP48-211ENST00000526044 TMC2Q8TDI7 906 aa10.28□□□□□ -0.76
USP48-211ENST00000526044 KIF3CO14782 793 aa10.27□□□□□ -0.77
USP48-211ENST00000526044 SLC34A2O95436 690 aa10.25□□□□□ -0.77
USP48-211ENST00000526044 LHX6Q9UPM6 363 aa10.25□□□□□ -0.77
USP48-211ENST00000526044 PCDHGA4Q9Y5G9 962 aa10.25□□□□□ -0.77
USP48-211ENST00000526044 TSHZ2Q9NRE2 1034 aa10.24□□□□□ -0.77
USP48-211ENST00000526044 PSDA5PKW4 1024 aaPredicted RBP10.23□□□□□ -0.77
USP48-211ENST00000526044 HAP1P54257 671 aaPredicted RBP10.23□□□□□ -0.77
USP48-211ENST00000526044 HCSTQ9UBK5 93 aa10.23□□□□□ -0.77
USP48-211ENST00000526044 AXIN2Q9Y2T1 843 aa10.21□□□□□ -0.77
USP48-211ENST00000526044 CADPS2Q86UW7 1296 aa10.2□□□□□ -0.78
USP48-211ENST00000526044 PDE4AP27815 886 aa10.19□□□□□ -0.78
USP48-211ENST00000526044 PLA2G2EQ9NZK7 142 aa10.19□□□□□ -0.78
USP48-211ENST00000526044 ARHGAP33O14559 1287 aa10.18□□□□□ -0.78
USP48-211ENST00000526044 GPHNQ9NQX3 736 aaPredicted RBP10.17□□□□□ -0.78
USP48-211ENST00000526044 ADGRD1Q6QNK2 874 aa10.16□□□□□ -0.78
USP48-211ENST00000526044 CRISPLD2Q9H0B8 497 aa10.16□□□□□ -0.78
USP48-211ENST00000526044 NCKAP5LQ9HCH0 1330 aa10.15□□□□□ -0.78
USP48-211ENST00000526044 POTEEQ6S8J3 1075 aa10.15□□□□□ -0.78
USP48-211ENST00000526044 STAC3Q96MF2 364 aa10.15□□□□□ -0.78
USP48-211ENST00000526044 LARP6Q9BRS8 491 aaKnown RBP10.14□□□□□ -0.79
USP48-211ENST00000526044 KCNH8Q96L42 1107 aa10.12□□□□□ -0.79
USP48-211ENST00000526044 TK2O00142 265 aa10.11□□□□□ -0.79
USP48-211ENST00000526044 TBC1D12O60347 775 aa10.11□□□□□ -0.79
USP48-211ENST00000526044 FOXK1P85037 733 aa10.1□□□□□ -0.79
USP48-211ENST00000526044 VSIG10Q8N0Z9 540 aa10.1□□□□□ -0.79
USP48-211ENST00000526044 DDX27Q96GQ7 796 aaKnown RBP10.1□□□□□ -0.79
USP48-211ENST00000526044 WDR70Q9NW82 654 aa10.1□□□□□ -0.79
USP48-211ENST00000526044 NISCHQ9Y2I1 1504 aa10.1□□□□□ -0.79
USP48-211ENST00000526044 DSG2Q14126 1118 aa10.09□□□□□ -0.79
USP48-211ENST00000526044 MFSD10Q14728 455 aa10.09□□□□□ -0.79
USP48-211ENST00000526044 PPP4R3BQ5MIZ7 849 aa10.09□□□□□ -0.79
USP48-211ENST00000526044 PTCD2Q8WV60 388 aaKnown RBP10.08□□□□□ -0.8
USP48-211ENST00000526044 PPP1R15BQ5SWA1 713 aa10.07□□□□□ -0.8
USP48-211ENST00000526044 PLPP6Q8IY26 295 aa10.07□□□□□ -0.8
USP48-211ENST00000526044 SLC24A1O60721 1099 aa10.06□□□□□ -0.8
USP48-211ENST00000526044 PSEN2P49810 448 aa10.05□□□□□ -0.8
USP48-211ENST00000526044 KCTD12Q96CX2 325 aaKnown RBP10.04□□□□□ -0.8
USP48-211ENST00000526044 KDM2AQ9Y2K7 1162 aa10.04□□□□□ -0.8
USP48-211ENST00000526044 HRO43593 1189 aa10.03□□□□□ -0.8
USP48-211ENST00000526044 DMRTA1Q5VZB9 504 aa10.03□□□□□ -0.8
USP48-211ENST00000526044 KDM4FA0A1W2PPD8 638 aa10.01□□□□□ -0.81
USP48-211ENST00000526044 E2F4Q16254 413 aa9.99□□□□□ -0.81
USP48-211ENST00000526044 CAMK2BQ13554 666 aa9.98□□□□□ -0.81
USP48-211ENST00000526044 KCNK17Q96T54 332 aa9.98□□□□□ -0.81
USP48-211ENST00000526044 PTPN5P54829 565 aa9.94□□□□□ -0.82
USP48-211ENST00000526044 OXER1Q8TDS5 423 aa9.93□□□□□ -0.82
USP48-211ENST00000526044 EMILIN3Q9NT22 766 aa9.93□□□□□ -0.82
USP48-211ENST00000526044 GOLGA8CPA6NN73 597 aa9.92□□□□□ -0.82
USP48-211ENST00000526044 P3H3Q8IVL6 736 aa9.92□□□□□ -0.82
USP48-211ENST00000526044 UPF1Q92900 1129 aaKnown RBP eCLIP9.92□□□□□ -0.82
USP48-211ENST00000526044 VPS9D1Q9Y2B5 631 aa9.92□□□□□ -0.82
USP48-211ENST00000526044 MAP3K9P80192 1104 aa9.91□□□□□ -0.82
USP48-211ENST00000526044 ZNF454Q8N9F8 522 aa9.91□□□□□ -0.82
USP48-211ENST00000526044 RGS20O76081 388 aa9.9□□□□□ -0.82
USP48-211ENST00000526044 KCNV2Q8TDN2 545 aa9.89□□□□□ -0.83
USP48-211ENST00000526044 ARIH1Q9Y4X5 557 aaPredicted RBP9.89□□□□□ -0.83
USP48-211ENST00000526044 PTPREP23469 700 aa9.88□□□□□ -0.83
USP48-211ENST00000526044 ARHGEF1Q92888 912 aaKnown RBP9.88□□□□□ -0.83
USP48-211ENST00000526044 SLC4A5Q9BY07 1137 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms