RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 PCF11O94913 1555 aaKnown RBP10.82□□□□□ -0.68
CD44-221ENST00000526000 ZNF777Q9ULD5 760 aaPredicted RBP10.81□□□□□ -0.68
CD44-221ENST00000526000 TTC37Q6PGP7 1564 aa10.81□□□□□ -0.68
CD44-221ENST00000526000 ZFYVE16Q7Z3T8 1539 aa10.8□□□□□ -0.68
CD44-221ENST00000526000 HECW1Q76N89 1606 aa10.79□□□□□ -0.68
CD44-221ENST00000526000 ATP10AO60312 1499 aa10.79□□□□□ -0.68
CD44-221ENST00000526000 ESF1Q9H501 851 aaKnown RBP10.78□□□□□ -0.68
CD44-221ENST00000526000 ARHGEF40Q8TER5 1519 aa10.78□□□□□ -0.68
CD44-221ENST00000526000 ARHGAP35Q9NRY4 1499 aa10.77□□□□□ -0.69
CD44-221ENST00000526000 RICTORQ6R327 1708 aa10.77□□□□□ -0.69
CD44-221ENST00000526000 SIGLEC1Q9BZZ2 1709 aa10.76□□□□□ -0.69
CD44-221ENST00000526000 FMN1Q68DA7 1419 aa10.75□□□□□ -0.69
CD44-221ENST00000526000 MAGI2Q86UL8 1455 aa10.75□□□□□ -0.69
CD44-221ENST00000526000 EFCAB5A4FU69 1503 aa10.75□□□□□ -0.69
CD44-221ENST00000526000 HNRNPMP52272 730 aaKnown RBP eCLIP10.74□□□□□ -0.69
CD44-221ENST00000526000 TROQ12816 1431 aaPredicted RBP10.74□□□□□ -0.69
CD44-221ENST00000526000 C9orf84Q5VXU9 1444 aa10.74□□□□□ -0.69
CD44-221ENST00000526000 ARHGAP5Q13017 1502 aa10.74□□□□□ -0.69
CD44-221ENST00000526000 DMRT2Q9Y5R5 561 aa10.73□□□□□ -0.69
CD44-221ENST00000526000 TRAPPC8Q9Y2L5 1435 aa10.73□□□□□ -0.69
CD44-221ENST00000526000 ZMYM4Q5VZL5 1548 aa10.73□□□□□ -0.69
CD44-221ENST00000526000 CLIP1P30622 1438 aa10.72□□□□□ -0.69
CD44-221ENST00000526000 CFAP74Q9C0B2 1584 aa10.72□□□□□ -0.69
CD44-221ENST00000526000 KIF14Q15058 1648 aa10.71□□□□□ -0.69
CD44-221ENST00000526000 ILDR2Q71H61 639 aa10.7□□□□□ -0.7
CD44-221ENST00000526000 ARHGEF12Q9NZN5 1544 aa10.69□□□□□ -0.7
CD44-221ENST00000526000 DISP3Q9P2K9 1392 aa10.69□□□□□ -0.7
CD44-221ENST00000526000 NCKAP5LQ9HCH0 1330 aa10.69□□□□□ -0.7
CD44-221ENST00000526000 GGT6Q6P531 493 aa10.69□□□□□ -0.7
CD44-221ENST00000526000 ZNF518AQ6AHZ1 1483 aa10.68□□□□□ -0.7
CD44-221ENST00000526000 UHRF1BP1Q6BDS2 1440 aa10.68□□□□□ -0.7
CD44-221ENST00000526000 FER1L4A9Z1Z3 1794 aa10.67□□□□□ -0.7
CD44-221ENST00000526000 SPAG9O60271 1321 aaKnown RBP10.67□□□□□ -0.7
CD44-221ENST00000526000 CFDP1Q9UEE9 299 aaPredicted RBP10.66□□□□□ -0.7
CD44-221ENST00000526000 ZNF644Q9H582 1327 aaPredicted RBP10.65□□□□□ -0.7
CD44-221ENST00000526000 MYO5CQ9NQX4 1742 aa10.64□□□□□ -0.71
CD44-221ENST00000526000 CASKIN1Q8WXD9 1431 aa10.64□□□□□ -0.71
CD44-221ENST00000526000 ZMYM3Q14202 1370 aa10.64□□□□□ -0.71
CD44-221ENST00000526000 MLH3Q9UHC1 1453 aa10.63□□□□□ -0.71
CD44-221ENST00000526000 DIP2CQ9Y2E4 1556 aa10.63□□□□□ -0.71
CD44-221ENST00000526000 ZNF335Q9H4Z2 1342 aaPredicted RBP10.61□□□□□ -0.71
CD44-221ENST00000526000 UBAP1LF5GYI3 381 aa10.61□□□□□ -0.71
CD44-221ENST00000526000 CCNB3Q8WWL7 1395 aa10.61□□□□□ -0.71
CD44-221ENST00000526000 CDC42BPBQ9Y5S2 1711 aa10.61□□□□□ -0.71
CD44-221ENST00000526000 KDM5CP41229 1560 aa10.6□□□□□ -0.71
CD44-221ENST00000526000 SETD1BQ9UPS6 1966 aaKnown RBP10.6□□□□□ -0.71
CD44-221ENST00000526000 ABCA6Q8N139 1617 aa10.6□□□□□ -0.71
CD44-221ENST00000526000 STRCQ7RTU9 1775 aa10.6□□□□□ -0.71
CD44-221ENST00000526000 PTPRTO14522 1441 aa10.59□□□□□ -0.71
CD44-221ENST00000526000 GPATCH8Q9UKJ3 1502 aaKnown RBP10.59□□□□□ -0.71
CD44-221ENST00000526000 LRRIQ1Q96JM4 1722 aa10.59□□□□□ -0.71
CD44-221ENST00000526000 FBXO31Q5XUX0 539 aaPredicted RBP10.59□□□□□ -0.71
CD44-221ENST00000526000 PREX1Q8TCU6 1659 aa10.59□□□□□ -0.71
CD44-221ENST00000526000 SCAF1Q9H7N4 1312 aaKnown RBP10.58□□□□□ -0.71
CD44-221ENST00000526000 CCDC18Q5T9S5 1454 aa10.58□□□□□ -0.72
CD44-221ENST00000526000 MTUS2Q5JR59 1369 aa10.58□□□□□ -0.72
CD44-221ENST00000526000 ABCC1P33527 1531 aa10.58□□□□□ -0.72
CD44-221ENST00000526000 SOCS7O14512 581 aa10.57□□□□□ -0.72
CD44-221ENST00000526000 KIF3BO15066 747 aa10.57□□□□□ -0.72
CD44-221ENST00000526000 SENP3Q9H4L4 574 aaPredicted RBP10.57□□□□□ -0.72
CD44-221ENST00000526000 AGLP35573 1532 aa10.57□□□□□ -0.72
CD44-221ENST00000526000 CNTLNQ9NXG0 1405 aa10.57□□□□□ -0.72
CD44-221ENST00000526000 PIP4K2BP78356 416 aa10.56□□□□□ -0.72
CD44-221ENST00000526000 KIDINS220Q9ULH0 1771 aa10.56□□□□□ -0.72
CD44-221ENST00000526000 NCOA1Q15788 1441 aa10.56□□□□□ -0.72
CD44-221ENST00000526000 C3P01024 1663 aa10.56□□□□□ -0.72
CD44-221ENST00000526000 SAMD9LQ8IVG5 1584 aa10.56□□□□□ -0.72
CD44-221ENST00000526000 SYCP2Q9BX26 1530 aa10.55□□□□□ -0.72
CD44-221ENST00000526000 PPP6R1Q9UPN7 881 aa10.55□□□□□ -0.72
CD44-221ENST00000526000 PREX2Q70Z35 1606 aa10.55□□□□□ -0.72
CD44-221ENST00000526000 PKD2Q13563 968 aa10.54□□□□□ -0.72
CD44-221ENST00000526000 CAMSAP1Q5T5Y3 1602 aa10.54□□□□□ -0.72
CD44-221ENST00000526000 A2MP01023 1474 aa10.54□□□□□ -0.72
CD44-221ENST00000526000 ITSN2Q9NZM3 1697 aa10.53□□□□□ -0.72
CD44-221ENST00000526000 SUPT6HQ7KZ85 1726 aaKnown RBP10.53□□□□□ -0.72
CD44-221ENST00000526000 REREQ9P2R6 1566 aa10.53□□□□□ -0.72
CD44-221ENST00000526000 LOC105371045A0A1W2PR82 267 aa10.53□□□□□ -0.72
CD44-221ENST00000526000 FYCO1Q9BQS8 1478 aa10.53□□□□□ -0.72
CD44-221ENST00000526000 PTPRKQ15262 1439 aa10.52□□□□□ -0.73
CD44-221ENST00000526000 KIAA1107Q9UPP5 1409 aa10.52□□□□□ -0.73
CD44-221ENST00000526000 LTBP4Q8N2S1 1624 aa10.52□□□□□ -0.73
CD44-221ENST00000526000 CDC42BPAQ5VT25 1732 aa10.52□□□□□ -0.73
CD44-221ENST00000526000 WASHC2CQ9Y4E1 1318 aa10.52□□□□□ -0.73
CD44-221ENST00000526000 NPATQ14207 1427 aa10.51□□□□□ -0.73
CD44-221ENST00000526000 ATP7AQ04656 1500 aa10.5□□□□□ -0.73
CD44-221ENST00000526000 DHX29Q7Z478 1369 aaKnown RBP10.5□□□□□ -0.73
CD44-221ENST00000526000 PLEKHH2Q8IVE3 1493 aa10.49□□□□□ -0.73
CD44-221ENST00000526000 TSPY4P0CV99 314 aa10.49□□□□□ -0.73
CD44-221ENST00000526000 TSPY10P0CW01 314 aa10.49□□□□□ -0.73
CD44-221ENST00000526000 HSPA1LP34931 641 aa10.49□□□□□ -0.73
CD44-221ENST00000526000 ANKLE2Q86XL3 938 aa10.48□□□□□ -0.73
CD44-221ENST00000526000 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.48□□□□□ -0.73
CD44-221ENST00000526000 CLTCQ00610 1675 aaKnown RBP10.47□□□□□ -0.73
CD44-221ENST00000526000 TNRQ92752 1358 aa10.47□□□□□ -0.73
CD44-221ENST00000526000 MBD5Q9P267 1494 aa10.47□□□□□ -0.73
CD44-221ENST00000526000 TOM1O60784 492 aa10.46□□□□□ -0.73
CD44-221ENST00000526000 THEMISQ8N1K5 641 aaPredicted RBP10.46□□□□□ -0.73
CD44-221ENST00000526000 KANK4Q5T7N3 995 aaPredicted RBP10.45□□□□□ -0.74
CD44-221ENST00000526000 RSPH4AQ5TD94 716 aa10.44□□□□□ -0.74
CD44-221ENST00000526000 CEP162Q5TB80 1403 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms