RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 PREX2Q70Z35 1606 aa8.44□□□□□ -1.06
HMGB1P40-201ENST00000525121 LRRC9Q6ZRR7 1453 aa8.44□□□□□ -1.06
HMGB1P40-201ENST00000525121 COL17A1Q9UMD9 1497 aaPredicted RBP8.44□□□□□ -1.06
HMGB1P40-201ENST00000525121 CFDP1Q9UEE9 299 aaPredicted RBP8.43□□□□□ -1.06
HMGB1P40-201ENST00000525121 SCAPERQ9BY12 1400 aa8.43□□□□□ -1.06
HMGB1P40-201ENST00000525121 SUPT6HQ7KZ85 1726 aaKnown RBP8.43□□□□□ -1.06
HMGB1P40-201ENST00000525121 RAPGEF3O95398 923 aa8.42□□□□□ -1.06
HMGB1P40-201ENST00000525121 MYT1LQ9UL68 1186 aa8.42□□□□□ -1.06
HMGB1P40-201ENST00000525121 ZNF777Q9ULD5 760 aaPredicted RBP8.42□□□□□ -1.06
HMGB1P40-201ENST00000525121 POGZQ7Z3K3 1410 aa8.42□□□□□ -1.06
HMGB1P40-201ENST00000525121 NCOA2Q15596 1464 aa8.42□□□□□ -1.06
HMGB1P40-201ENST00000525121 PLEKHH2Q8IVE3 1493 aa8.42□□□□□ -1.06
HMGB1P40-201ENST00000525121 ITSN2Q9NZM3 1697 aa8.42□□□□□ -1.06
HMGB1P40-201ENST00000525121 GPATCH8Q9UKJ3 1502 aaKnown RBP8.41□□□□□ -1.06
HMGB1P40-201ENST00000525121 ZNF518AQ6AHZ1 1483 aa8.41□□□□□ -1.06
HMGB1P40-201ENST00000525121 ABCC1P33527 1531 aa8.39□□□□□ -1.07
HMGB1P40-201ENST00000525121 ZMYM4Q5VZL5 1548 aa8.39□□□□□ -1.07
HMGB1P40-201ENST00000525121 MAGI2Q86UL8 1455 aa8.39□□□□□ -1.07
HMGB1P40-201ENST00000525121 CDC42BPAQ5VT25 1732 aa8.39□□□□□ -1.07
HMGB1P40-201ENST00000525121 FRMPD1Q5SYB0 1578 aa8.39□□□□□ -1.07
HMGB1P40-201ENST00000525121 CDC42BPBQ9Y5S2 1711 aa8.38□□□□□ -1.07
HMGB1P40-201ENST00000525121 KANK4Q5T7N3 995 aaPredicted RBP8.38□□□□□ -1.07
HMGB1P40-201ENST00000525121 ZFYVE16Q7Z3T8 1539 aa8.38□□□□□ -1.07
HMGB1P40-201ENST00000525121 ARHGEF40Q8TER5 1519 aa8.38□□□□□ -1.07
HMGB1P40-201ENST00000525121 KIAA1107Q9UPP5 1409 aa8.37□□□□□ -1.07
HMGB1P40-201ENST00000525121 RICTORQ6R327 1708 aa8.37□□□□□ -1.07
HMGB1P40-201ENST00000525121 SAMD9LQ8IVG5 1584 aa8.37□□□□□ -1.07
HMGB1P40-201ENST00000525121 SYCP2Q9BX26 1530 aa8.37□□□□□ -1.07
HMGB1P40-201ENST00000525121 MYOM3Q5VTT5 1437 aa8.37□□□□□ -1.07
HMGB1P40-201ENST00000525121 HECW2Q9P2P5 1572 aa8.36□□□□□ -1.07
HMGB1P40-201ENST00000525121 ARID4BQ4LE39 1312 aaPredicted RBP8.36□□□□□ -1.07
HMGB1P40-201ENST00000525121 AEBP2Q6ZN18 517 aaPredicted RBP8.36□□□□□ -1.07
HMGB1P40-201ENST00000525121 KDM5CP41229 1560 aa8.35□□□□□ -1.07
HMGB1P40-201ENST00000525121 SPAG9O60271 1321 aaKnown RBP8.35□□□□□ -1.07
HMGB1P40-201ENST00000525121 CAMSAP2Q08AD1 1489 aa8.35□□□□□ -1.07
HMGB1P40-201ENST00000525121 HNRNPMP52272 730 aaKnown RBP eCLIP8.35□□□□□ -1.07
HMGB1P40-201ENST00000525121 AFAP1Q8N556 730 aa8.35□□□□□ -1.07
HMGB1P40-201ENST00000525121 MIA2Q96PC5 1412 aa8.35□□□□□ -1.07
HMGB1P40-201ENST00000525121 TRAPPC8Q9Y2L5 1435 aa8.35□□□□□ -1.07
HMGB1P40-201ENST00000525121 MLH3Q9UHC1 1453 aa8.34□□□□□ -1.07
HMGB1P40-201ENST00000525121 RSPH4AQ5TD94 716 aa8.34□□□□□ -1.07
HMGB1P40-201ENST00000525121 C9orf84Q5VXU9 1444 aa8.34□□□□□ -1.07
HMGB1P40-201ENST00000525121 YEATS2Q9ULM3 1422 aa8.34□□□□□ -1.07
HMGB1P40-201ENST00000525121 ARHGEF12Q9NZN5 1544 aa8.34□□□□□ -1.08
HMGB1P40-201ENST00000525121 ZNF644Q9H582 1327 aaPredicted RBP8.33□□□□□ -1.08
HMGB1P40-201ENST00000525121 ATP10AO60312 1499 aa8.33□□□□□ -1.08
HMGB1P40-201ENST00000525121 CCDC141Q6ZP82 1450 aa8.33□□□□□ -1.08
HMGB1P40-201ENST00000525121 TSPY4P0CV99 314 aa8.32□□□□□ -1.08
HMGB1P40-201ENST00000525121 TSPY10P0CW01 314 aa8.32□□□□□ -1.08
HMGB1P40-201ENST00000525121 FGD6Q6ZV73 1430 aa8.31□□□□□ -1.08
HMGB1P40-201ENST00000525121 ATP7AQ04656 1500 aa8.31□□□□□ -1.08
HMGB1P40-201ENST00000525121 MBD5Q9P267 1494 aa8.31□□□□□ -1.08
HMGB1P40-201ENST00000525121 ARHGEF5Q12774 1597 aa8.31□□□□□ -1.08
HMGB1P40-201ENST00000525121 INO80Q9ULG1 1556 aaPredicted RBP8.3□□□□□ -1.08
HMGB1P40-201ENST00000525121 DIP2CQ9Y2E4 1556 aa8.3□□□□□ -1.08
HMGB1P40-201ENST00000525121 RTEL1-TNFRSF6BF6WH68 1400 aa8.29□□□□□ -1.08
HMGB1P40-201ENST00000525121 PTPN23Q9H3S7 1636 aa8.29□□□□□ -1.08
HMGB1P40-201ENST00000525121 FAM50AQ14320 339 aaKnown RBP8.29□□□□□ -1.08
HMGB1P40-201ENST00000525121 ESF1Q9H501 851 aaKnown RBP8.29□□□□□ -1.08
HMGB1P40-201ENST00000525121 REREQ9P2R6 1566 aa8.29□□□□□ -1.08
HMGB1P40-201ENST00000525121 ABCA6Q8N139 1617 aa8.29□□□□□ -1.08
HMGB1P40-201ENST00000525121 TCOF1Q13428 1488 aaKnown RBP8.28□□□□□ -1.08
HMGB1P40-201ENST00000525121 KDM4FA0A1W2PPD8 638 aa8.28□□□□□ -1.08
HMGB1P40-201ENST00000525121 MLECQ14165 292 aa8.28□□□□□ -1.08
HMGB1P40-201ENST00000525121 KIDINS220Q9ULH0 1771 aa8.27□□□□□ -1.08
HMGB1P40-201ENST00000525121 A2MP01023 1474 aa8.27□□□□□ -1.09
HMGB1P40-201ENST00000525121 PPARGC1BQ86YN6 1023 aaKnown RBP8.27□□□□□ -1.09
HMGB1P40-201ENST00000525121 AGLP35573 1532 aa8.27□□□□□ -1.09
HMGB1P40-201ENST00000525121 SHANK2Q9UPX8 1470 aa8.26□□□□□ -1.09
HMGB1P40-201ENST00000525121 BCORL1Q5H9F3 1711 aa8.26□□□□□ -1.09
HMGB1P40-201ENST00000525121 ADGBQ8N7X0 1667 aa8.26□□□□□ -1.09
HMGB1P40-201ENST00000525121 DAPK1P53355 1430 aa8.25□□□□□ -1.09
HMGB1P40-201ENST00000525121 MAST1Q9Y2H9 1570 aa8.25□□□□□ -1.09
HMGB1P40-201ENST00000525121 DHX29Q7Z478 1369 aaKnown RBP8.24□□□□□ -1.09
HMGB1P40-201ENST00000525121 ANKRD30AQ9BXX3 1397 aa8.24□□□□□ -1.09
HMGB1P40-201ENST00000525121 ABCC5O15440 1437 aa8.24□□□□□ -1.09
HMGB1P40-201ENST00000525121 DNMT1P26358 1616 aaKnown RBP8.24□□□□□ -1.09
HMGB1P40-201ENST00000525121 MADDQ8WXG6 1647 aa8.24□□□□□ -1.09
HMGB1P40-201ENST00000525121 ADAMTSL3P82987 1691 aa8.24□□□□□ -1.09
HMGB1P40-201ENST00000525121 PLXNC1O60486 1568 aa8.23□□□□□ -1.09
HMGB1P40-201ENST00000525121 CNTLNQ9NXG0 1405 aa8.23□□□□□ -1.09
HMGB1P40-201ENST00000525121 PTPRMP28827 1452 aa8.23□□□□□ -1.09
HMGB1P40-201ENST00000525121 CROCC2H7BZ55 1655 aa8.23□□□□□ -1.09
HMGB1P40-201ENST00000525121 KIF15Q9NS87 1388 aa8.22□□□□□ -1.09
HMGB1P40-201ENST00000525121 KIF3BO15066 747 aa8.22□□□□□ -1.09
HMGB1P40-201ENST00000525121 GGT6Q6P531 493 aa8.22□□□□□ -1.09
HMGB1P40-201ENST00000525121 DUOX2Q9NRD8 1548 aa8.22□□□□□ -1.09
HMGB1P40-201ENST00000525121 FER1L4A9Z1Z3 1794 aa8.22□□□□□ -1.09
HMGB1P40-201ENST00000525121 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.22□□□□□ -1.09
HMGB1P40-201ENST00000525121 RIMS1Q86UR5 1692 aaKnown RBP8.21□□□□□ -1.09
HMGB1P40-201ENST00000525121 SIGLEC1Q9BZZ2 1709 aa8.21□□□□□ -1.09
HMGB1P40-201ENST00000525121 PLPPR3Q6T4P5 718 aa8.21□□□□□ -1.1
HMGB1P40-201ENST00000525121 RRP7BPQ9NSQ0 103 aa8.21□□□□□ -1.1
HMGB1P40-201ENST00000525121 CHIC2Q9UKJ5 165 aa8.21□□□□□ -1.1
HMGB1P40-201ENST00000525121 PPP6R1Q9UPN7 881 aa8.21□□□□□ -1.1
HMGB1P40-201ENST00000525121 ERBINQ96RT1 1412 aa8.2□□□□□ -1.1
HMGB1P40-201ENST00000525121 ITGAEP38570 1179 aa8.2□□□□□ -1.1
HMGB1P40-201ENST00000525121 RRBP1Q9P2E9 1410 aaKnown RBP8.2□□□□□ -1.1
HMGB1P40-201ENST00000525121 FAM135AQ9P2D6 1515 aa8.19□□□□□ -1.1
HMGB1P40-201ENST00000525121 EIF2AK4Q9P2K8 1649 aaKnown RBP8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms