RNA–Protein interactions for RNA: ENST00000521216.5

SKP1-208, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SKP1, Length 899 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-208ENST00000521216 TMEM121BQ9BXQ6 578 aaPredicted RBP12.27□□□□□ -0.45
SKP1-208ENST00000521216 CRISPLD2Q9H0B8 497 aa12.27□□□□□ -0.45
SKP1-208ENST00000521216 TMC2Q8TDI7 906 aa12.26□□□□□ -0.45
SKP1-208ENST00000521216 DDX27Q96GQ7 796 aaKnown RBP12.26□□□□□ -0.45
SKP1-208ENST00000521216 GPHNQ9NQX3 736 aaPredicted RBP12.24□□□□□ -0.45
SKP1-208ENST00000521216 P3H3Q8IVL6 736 aa12.23□□□□□ -0.45
SKP1-208ENST00000521216 NBR1Q14596 966 aa12.22□□□□□ -0.45
SKP1-208ENST00000521216 C3orf67Q6ZVT6 689 aa12.22□□□□□ -0.45
SKP1-208ENST00000521216 E2F4Q16254 413 aa12.21□□□□□ -0.45
SKP1-208ENST00000521216 MFSD10Q14728 455 aa12.2□□□□□ -0.46
SKP1-208ENST00000521216 KCNV2Q8TDN2 545 aa12.2□□□□□ -0.46
SKP1-208ENST00000521216 C2orf72A6NCS6 295 aa12.19□□□□□ -0.46
SKP1-208ENST00000521216 PPP1R15BQ5SWA1 713 aa12.19□□□□□ -0.46
SKP1-208ENST00000521216 DSG2Q14126 1118 aa12.17□□□□□ -0.46
SKP1-208ENST00000521216 TMEM92Q6UXU6 159 aa12.15□□□□□ -0.46
SKP1-208ENST00000521216 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.14□□□□□ -0.47
SKP1-208ENST00000521216 FOXK1P85037 733 aa12.13□□□□□ -0.47
SKP1-208ENST00000521216 PLPP6Q8IY26 295 aa12.13□□□□□ -0.47
SKP1-208ENST00000521216 KIF3CO14782 793 aa12.12□□□□□ -0.47
SKP1-208ENST00000521216 POTEB2H3BUK9 544 aa12.09□□□□□ -0.47
SKP1-208ENST00000521216 ARHGEF1Q92888 912 aaKnown RBP12.09□□□□□ -0.47
SKP1-208ENST00000521216 POTEJP0CG39 1038 aa12.07□□□□□ -0.48
SKP1-208ENST00000521216 CAMK2BQ13554 666 aa12.07□□□□□ -0.48
SKP1-208ENST00000521216 SCUBE2Q9NQ36 999 aa12.03□□□□□ -0.48
SKP1-208ENST00000521216 EMILIN3Q9NT22 766 aa12.03□□□□□ -0.48
SKP1-208ENST00000521216 UPF1Q92900 1129 aaKnown RBP eCLIP12.02□□□□□ -0.49
SKP1-208ENST00000521216 DPYSL4O14531 572 aa12.01□□□□□ -0.49
SKP1-208ENST00000521216 MAMSTRQ6ZN01 415 aa12.01□□□□□ -0.49
SKP1-208ENST00000521216 SLAIN1Q8ND83 568 aa12□□□□□ -0.49
SKP1-208ENST00000521216 MAP3K9P80192 1104 aa11.99□□□□□ -0.49
SKP1-208ENST00000521216 SEMA3EO15041 775 aa11.98□□□□□ -0.49
SKP1-208ENST00000521216 ARIH1Q9Y4X5 557 aaPredicted RBP11.97□□□□□ -0.49
SKP1-208ENST00000521216 TULP1O00294 542 aaPredicted RBP11.92□□□□□ -0.5
SKP1-208ENST00000521216 OXER1Q8TDS5 423 aa11.92□□□□□ -0.5
SKP1-208ENST00000521216 TBC1D12O60347 775 aa11.91□□□□□ -0.5
SKP1-208ENST00000521216 LHX8Q68G74 356 aa11.9□□□□□ -0.5
SKP1-208ENST00000521216 SPDYE16A6NNV3 312 aaPredicted RBP11.89□□□□□ -0.51
SKP1-208ENST00000521216 TESPA1A2RU30 521 aaPredicted RBP11.88□□□□□ -0.51
SKP1-208ENST00000521216 PDIA6Q15084 440 aa11.88□□□□□ -0.51
SKP1-208ENST00000521216 TPRNQ4KMQ1 711 aa11.88□□□□□ -0.51
SKP1-208ENST00000521216 SLC34A2O95436 690 aa11.87□□□□□ -0.51
SKP1-208ENST00000521216 PTCD2Q8WV60 388 aaKnown RBP11.87□□□□□ -0.51
SKP1-208ENST00000521216 PRKCSHP14314 528 aaPredicted RBP11.86□□□□□ -0.51
SKP1-208ENST00000521216 MLLT3P42568 568 aaPredicted RBP11.86□□□□□ -0.51
SKP1-208ENST00000521216 SMYD5Q6GMV2 418 aa11.86□□□□□ -0.51
SKP1-208ENST00000521216 EVI5O60447 810 aa11.85□□□□□ -0.51
SKP1-208ENST00000521216 OTUD5Q96G74 571 aa11.85□□□□□ -0.51
SKP1-208ENST00000521216 ZNF316A6NFI3 1004 aaPredicted RBP11.84□□□□□ -0.51
SKP1-208ENST00000521216 DOK7Q18PE1 504 aa11.84□□□□□ -0.51
SKP1-208ENST00000521216 LMOD2Q6P5Q4 547 aa11.84□□□□□ -0.51
SKP1-208ENST00000521216 PCDHGA4Q9Y5G9 962 aa11.84□□□□□ -0.51
SKP1-208ENST00000521216 GRXCR2A6NFK2 248 aa11.83□□□□□ -0.52
SKP1-208ENST00000521216 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.83□□□□□ -0.52
SKP1-208ENST00000521216 ZNF710Q8N1W2 664 aa11.83□□□□□ -0.52
SKP1-208ENST00000521216 RIMBP2O15034 1052 aa11.81□□□□□ -0.52
SKP1-208ENST00000521216 HOXB3P14651 431 aaPredicted RBP11.8□□□□□ -0.52
SKP1-208ENST00000521216 DDX12PQ92771 950 aa11.8□□□□□ -0.52
SKP1-208ENST00000521216 ARSIQ5FYB1 569 aa11.79□□□□□ -0.52
SKP1-208ENST00000521216 SNPHO15079 494 aa11.78□□□□□ -0.52
SKP1-208ENST00000521216 KHSRPQ92945 711 aaKnown RBP eCLIP11.77□□□□□ -0.532e-7■■■□□ 16.3
SKP1-208ENST00000521216 RBM26Q5T8P6 1007 aaKnown RBP11.76□□□□□ -0.53
SKP1-208ENST00000521216 NUDT7P0C024 238 aa11.75□□□□□ -0.53
SKP1-208ENST00000521216 ANO8Q9HCE9 1232 aaPredicted RBP11.73□□□□□ -0.53
SKP1-208ENST00000521216 ZSWIM6Q9HCJ5 1215 aa11.73□□□□□ -0.53
SKP1-208ENST00000521216 PTGER2P43116 358 aa11.72□□□□□ -0.53
SKP1-208ENST00000521216 GPR153Q6NV75 609 aa11.71□□□□□ -0.53
SKP1-208ENST00000521216 OSBPP22059 807 aa11.68□□□□□ -0.54
SKP1-208ENST00000521216 NUTM2FA1L443 756 aa11.67□□□□□ -0.54
SKP1-208ENST00000521216 GPIHBP1Q8IV16 184 aa11.67□□□□□ -0.54
SKP1-208ENST00000521216 ZC3H15Q8WU90 426 aaKnown RBP11.67□□□□□ -0.54
SKP1-208ENST00000521216 KDM4FA0A1W2PPD8 638 aa11.66□□□□□ -0.54
SKP1-208ENST00000521216 PHF14O94880 888 aa11.66□□□□□ -0.54
SKP1-208ENST00000521216 ZNF454Q8N9F8 522 aa11.65□□□□□ -0.54
SKP1-208ENST00000521216 RBM33Q96EV2 1170 aaKnown RBP11.65□□□□□ -0.54
SKP1-208ENST00000521216 LHX6Q9UPM6 363 aa11.64□□□□□ -0.55
SKP1-208ENST00000521216 PCDHGA10Q9Y5H3 936 aa11.64□□□□□ -0.55
SKP1-208ENST00000521216 HOXB1P14653 301 aaPredicted RBP11.63□□□□□ -0.55
SKP1-208ENST00000521216 EPAS1Q99814 870 aa11.63□□□□□ -0.55
SKP1-208ENST00000521216 MAP3K7O43318 606 aa11.62□□□□□ -0.55
SKP1-208ENST00000521216 PRIM1P49642 420 aaKnown RBP11.62□□□□□ -0.55
SKP1-208ENST00000521216 TYW1BQ6NUM6 668 aa11.62□□□□□ -0.55
SKP1-208ENST00000521216 JPH4Q96JJ6 628 aa11.62□□□□□ -0.55
SKP1-208ENST00000521216 FOSBP53539 338 aa11.6□□□□□ -0.55
SKP1-208ENST00000521216 FAM163AQ96GL9 167 aaPredicted RBP11.6□□□□□ -0.55
SKP1-208ENST00000521216 EN1Q05925 392 aaPredicted RBP11.58□□□□□ -0.56
SKP1-208ENST00000521216 FBXW7Q969H0 707 aa11.58□□□□□ -0.56
SKP1-208ENST00000521216 ZDHHC16Q969W1 377 aa11.58□□□□□ -0.56
SKP1-208ENST00000521216 ST18O60284 1047 aa11.56□□□□□ -0.56
SKP1-208ENST00000521216 TSR1Q2NL82 804 aaKnown RBP11.56□□□□□ -0.56
SKP1-208ENST00000521216 PPP4R3BQ5MIZ7 849 aa11.56□□□□□ -0.56
SKP1-208ENST00000521216 KRI1Q8N9T8 703 aaKnown RBP11.56□□□□□ -0.56
SKP1-208ENST00000521216 ZMYND10O75800 440 aa11.55□□□□□ -0.56
SKP1-208ENST00000521216 PSDA5PKW4 1024 aaPredicted RBP11.54□□□□□ -0.56
SKP1-208ENST00000521216 FCHSD2O94868 740 aa11.54□□□□□ -0.56
SKP1-208ENST00000521216 ADAM33Q9BZ11 813 aa11.54□□□□□ -0.56
SKP1-208ENST00000521216 CDHR5Q9HBB8 845 aa11.54□□□□□ -0.56
SKP1-208ENST00000521216 MARVELD3Q96A59 401 aa11.53□□□□□ -0.56
SKP1-208ENST00000521216 ERBB3P21860 1342 aa11.53□□□□□ -0.56
SKP1-208ENST00000521216 C6orf132Q5T0Z8 1188 aa11.52□□□□□ -0.57
SKP1-208ENST00000521216 SLC24A3Q9HC58 644 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms