RNA–Protein interactions for RNA: ENST00000512055.5

CPNE4-209, Transcript of copine 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CPNE4, Length 5,431 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-209ENST00000512055 CCDC18Q5T9S5 1454 aa14.22□□□□□ -0.13
CPNE4-209ENST00000512055 CCER2I3L3R5 266 aa14.2□□□□□ -0.14
CPNE4-209ENST00000512055 DNAJC5BQ9UF47 199 aa14.2□□□□□ -0.14
CPNE4-209ENST00000512055 ANKRD30AQ9BXX3 1397 aa14.19□□□□□ -0.14
CPNE4-209ENST00000512055 CC2D1BQ5T0F9 858 aaKnown RBP14.18□□□□□ -0.14
CPNE4-209ENST00000512055 POLA1P09884 1462 aaPredicted RBP14.17□□□□□ -0.14
CPNE4-209ENST00000512055 TOPBP1Q92547 1522 aa14.17□□□□□ -0.14
CPNE4-209ENST00000512055 FGD6Q6ZV73 1430 aa14.17□□□□□ -0.14
CPNE4-209ENST00000512055 ZNF644Q9H582 1327 aaPredicted RBP14.17□□□□□ -0.14
CPNE4-209ENST00000512055 KNSTRNQ9Y448 316 aa14.17□□□□□ -0.14
CPNE4-209ENST00000512055 PEG3Q9GZU2 1588 aa14.17□□□□□ -0.14
CPNE4-209ENST00000512055 ARID3AQ99856 593 aa14.15□□□□□ -0.14
CPNE4-209ENST00000512055 CASKIN1Q8WXD9 1431 aa14.15□□□□□ -0.14
CPNE4-209ENST00000512055 RRBP1Q9P2E9 1410 aaKnown RBP14.14□□□□□ -0.15
CPNE4-209ENST00000512055 CALRP27797 417 aaKnown RBP14.14□□□□□ -0.15
CPNE4-209ENST00000512055 MYOM3Q5VTT5 1437 aa14.12□□□□□ -0.15
CPNE4-209ENST00000512055 EFCAB2Q5VUJ9 269 aa14.12□□□□□ -0.15
CPNE4-209ENST00000512055 CDCA8Q53HL2 280 aa14.11□□□□□ -0.15
CPNE4-209ENST00000512055 GOLGA6L22H0YM25 854 aa14.1□□□□□ -0.15
CPNE4-209ENST00000512055 NCOA2Q15596 1464 aa14.1□□□□□ -0.15
CPNE4-209ENST00000512055 TMF1P82094 1093 aa14.09□□□□□ -0.15
CPNE4-209ENST00000512055 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.08□□□□□ -0.16
CPNE4-209ENST00000512055 GGT6Q6P531 493 aa14.08□□□□□ -0.16
CPNE4-209ENST00000512055 PTPRGP23470 1445 aa14.08□□□□□ -0.16
CPNE4-209ENST00000512055 DEKP35659 375 aaKnown RBP14.07□□□□□ -0.16
CPNE4-209ENST00000512055 B4GALNT3Q6L9W6 998 aa14.07□□□□□ -0.16
CPNE4-209ENST00000512055 DDRGK1Q96HY6 314 aa14.07□□□□□ -0.16
CPNE4-209ENST00000512055 FYCO1Q9BQS8 1478 aa14.07□□□□□ -0.16
CPNE4-209ENST00000512055 ROCK2O75116 1388 aaKnown RBP14.07□□□□□ -0.16
CPNE4-209ENST00000512055 LAS1LQ9Y4W2 734 aaKnown RBP14.07□□□□□ -0.16
CPNE4-209ENST00000512055 BECN1Q14457 450 aa14.06□□□□□ -0.16
CPNE4-209ENST00000512055 PLCB2Q00722 1185 aa14.05□□□□□ -0.16
CPNE4-209ENST00000512055 NEUROD2Q15784 382 aa14.05□□□□□ -0.16
CPNE4-209ENST00000512055 DNMBPQ6XZF7 1577 aa14.05□□□□□ -0.16
CPNE4-209ENST00000512055 GRIN2BQ13224 1484 aa14.05□□□□□ -0.16
CPNE4-209ENST00000512055 TPRNQ4KMQ1 711 aa14.05□□□□□ -0.16
CPNE4-209ENST00000512055 VSIG10Q8N0Z9 540 aa14.05□□□□□ -0.16
CPNE4-209ENST00000512055 KANK1Q14678 1352 aa14.05□□□□□ -0.16
CPNE4-209ENST00000512055 PPM1GO15355 546 aaPredicted RBP14.05□□□□□ -0.16
CPNE4-209ENST00000512055 TIAM1Q13009 1591 aa14.04□□□□□ -0.16
CPNE4-209ENST00000512055 PPP4R2Q9NY27 417 aa14.04□□□□□ -0.16
CPNE4-209ENST00000512055 KIF3BO15066 747 aa14.03□□□□□ -0.16
CPNE4-209ENST00000512055 UACAQ9BZF9 1416 aa14.03□□□□□ -0.16
CPNE4-209ENST00000512055 PRDM2Q13029 1718 aa14.03□□□□□ -0.16
CPNE4-209ENST00000512055 A0A0U1RQG5 324 aaPredicted RBP14.01□□□□□ -0.17
CPNE4-209ENST00000512055 RSPH4AQ5TD94 716 aa14.01□□□□□ -0.17
CPNE4-209ENST00000512055 SPAG9O60271 1321 aaKnown RBP14.01□□□□□ -0.17
CPNE4-209ENST00000512055 ST20-MTHFSA0A0A6YYL1 179 aa14.01□□□□□ -0.17
CPNE4-209ENST00000512055 SAFB2Q14151 953 aaKnown RBP eCLIP14.01□□□□□ -0.17
CPNE4-209ENST00000512055 ABCA10Q8WWZ4 1543 aa14□□□□□ -0.17
CPNE4-209ENST00000512055 ZRSR1Q15695 479 aaKnown RBP14□□□□□ -0.17
CPNE4-209ENST00000512055 EFCAB5A4FU69 1503 aa14□□□□□ -0.17
CPNE4-209ENST00000512055 MRC2Q9UBG0 1479 aa13.99□□□□□ -0.17
CPNE4-209ENST00000512055 CHAF1AQ13111 956 aaPredicted RBP13.99□□□□□ -0.17
CPNE4-209ENST00000512055 MLECQ14165 292 aa13.98□□□□□ -0.17
CPNE4-209ENST00000512055 POGKQ9P215 609 aa13.98□□□□□ -0.17
CPNE4-209ENST00000512055 BIVM-ERCC5R4GMW8 1640 aa13.97□□□□□ -0.17
CPNE4-209ENST00000512055 CFAP53Q96M91 514 aa13.97□□□□□ -0.17
CPNE4-209ENST00000512055 MSNP26038 577 aaKnown RBP13.97□□□□□ -0.17
CPNE4-209ENST00000512055 KTN1Q86UP2 1357 aaKnown RBP13.97□□□□□ -0.17
CPNE4-209ENST00000512055 PRKRIP1Q9H875 184 aaPredicted RBP13.96□□□□□ -0.18
CPNE4-209ENST00000512055 PLEKHG5O94827 1062 aa13.95□□□□□ -0.18
CPNE4-209ENST00000512055 PCF11O94913 1555 aaKnown RBP13.94□□□□□ -0.18
CPNE4-209ENST00000512055 STK26Q9P289 416 aa13.94□□□□□ -0.18
CPNE4-209ENST00000512055 CCDC144AA2RUR9 1427 aa13.94□□□□□ -0.18
CPNE4-209ENST00000512055 ZBTB7CA1YPR0 619 aa13.93□□□□□ -0.18
CPNE4-209ENST00000512055 USP47Q96K76 1375 aa13.93□□□□□ -0.18
CPNE4-209ENST00000512055 NOP58Q9Y2X3 529 aaKnown RBP13.93□□□□□ -0.18
CPNE4-209ENST00000512055 SNAPC4Q5SXM2 1469 aa13.92□□□□□ -0.18
CPNE4-209ENST00000512055 IFT140Q96RY7 1462 aa13.92□□□□□ -0.18
CPNE4-209ENST00000512055 RALBP1Q15311 655 aa13.92□□□□□ -0.18
CPNE4-209ENST00000512055 NUTM2DQ5VT03 806 aaPredicted RBP13.92□□□□□ -0.18
CPNE4-209ENST00000512055 PRG4Q92954 1404 aaPredicted RBP13.92□□□□□ -0.18
CPNE4-209ENST00000512055 PNNQ9H307 717 aaKnown RBP13.92□□□□□ -0.18
CPNE4-209ENST00000512055 KIF15Q9NS87 1388 aa13.91□□□□□ -0.18
CPNE4-209ENST00000512055 URB2Q14146 1524 aaKnown RBP13.91□□□□□ -0.18
CPNE4-209ENST00000512055 SRPK2P78362 688 aaKnown RBP13.9□□□□□ -0.18
CPNE4-209ENST00000512055 LAMC3Q9Y6N6 1575 aa13.9□□□□□ -0.18
CPNE4-209ENST00000512055 ANKRD50Q9ULJ7 1429 aa13.9□□□□□ -0.18
CPNE4-209ENST00000512055 U2SURPO15042 1029 aaKnown RBP13.9□□□□□ -0.18
CPNE4-209ENST00000512055 CDK13Q14004 1512 aaKnown RBP13.9□□□□□ -0.18
CPNE4-209ENST00000512055 FRAT1Q92837 279 aaPredicted RBP13.9□□□□□ -0.18
CPNE4-209ENST00000512055 PODXL2Q9NZ53 605 aa13.9□□□□□ -0.18
CPNE4-209ENST00000512055 HFM1A2PYH4 1435 aa13.9□□□□□ -0.18
CPNE4-209ENST00000512055 A0A0G2JS52 829 aa13.89□□□□□ -0.19
CPNE4-209ENST00000512055 EHBP1L1Q8N3D4 1523 aa13.89□□□□□ -0.19
CPNE4-209ENST00000512055 WASHC2AQ641Q2 1341 aa13.89□□□□□ -0.19
CPNE4-209ENST00000512055 MORC1Q86VD1 984 aa13.89□□□□□ -0.19
CPNE4-209ENST00000512055 HSP90AA2PQ14568 343 aaPredicted RBP13.89□□□□□ -0.19
CPNE4-209ENST00000512055 TULP1O00294 542 aaPredicted RBP13.88□□□□□ -0.19
CPNE4-209ENST00000512055 RBM19Q9Y4C8 960 aaKnown RBP13.88□□□□□ -0.19
CPNE4-209ENST00000512055 PTMSP20962 102 aa13.88□□□□□ -0.19
CPNE4-209ENST00000512055 C14orf37Q86TY3 774 aa13.88□□□□□ -0.19
CPNE4-209ENST00000512055 KIF7Q2M1P5 1343 aa13.88□□□□□ -0.19
CPNE4-209ENST00000512055 APPP05067 770 aa13.88□□□□□ -0.19
CPNE4-209ENST00000512055 TSHZ2Q9NRE2 1034 aa13.87□□□□□ -0.19
CPNE4-209ENST00000512055 NLRP13Q86W25 1043 aa13.86□□□□□ -0.19
CPNE4-209ENST00000512055 PANK3Q9H999 370 aa13.86□□□□□ -0.19
CPNE4-209ENST00000512055 GOLGA6L6A8MZA4 724 aa13.86□□□□□ -0.19
CPNE4-209ENST00000512055 NRDCO43847 1150 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms