RNA–Protein interactions for RNA: ENST00000512055.5

CPNE4-209, Transcript of copine 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CPNE4, Length 5,431 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-209ENST00000512055 NISCHQ9Y2I1 1504 aa19.79■□□□□ 0.76
CPNE4-209ENST00000512055 DCAF8L2P0C7V8 631 aa18.92■□□□□ 0.62
CPNE4-209ENST00000512055 SHROOM4Q9ULL8 1493 aa18.29■□□□□ 0.52
CPNE4-209ENST00000512055 SUPT5HO00267 1087 aaKnown RBP18.26■□□□□ 0.51
CPNE4-209ENST00000512055 PELP1Q8IZL8 1130 aaKnown RBP17.72■□□□□ 0.43
CPNE4-209ENST00000512055 EHMT2Q96KQ7 1210 aa17.37■□□□□ 0.37
CPNE4-209ENST00000512055 MYT1Q01538 1121 aa17.31■□□□□ 0.36
CPNE4-209ENST00000512055 ERICH6Q7L0X2 663 aa17.21■□□□□ 0.35
CPNE4-209ENST00000512055 FAM9AQ8IZU1 332 aaPredicted RBP17.11■□□□□ 0.33
CPNE4-209ENST00000512055 PCGF6Q9BYE7 350 aa16.93■□□□□ 0.3
CPNE4-209ENST00000512055 TRIM41Q8WV44 630 aa16.88■□□□□ 0.29
CPNE4-209ENST00000512055 CCER1Q8TC90 406 aaPredicted RBP16.85■□□□□ 0.29
CPNE4-209ENST00000512055 CHIC1Q5VXU3 224 aa16.74■□□□□ 0.27
CPNE4-209ENST00000512055 TTBK1Q5TCY1 1321 aaPredicted RBP16.74■□□□□ 0.27
CPNE4-209ENST00000512055 ABCC9O60706 1549 aa16.62■□□□□ 0.25
CPNE4-209ENST00000512055 LOC105371045A0A1W2PR82 267 aa16.61■□□□□ 0.25
CPNE4-209ENST00000512055 CENPBP07199 599 aaPredicted RBP16.61■□□□□ 0.25
CPNE4-209ENST00000512055 RANGAP1P46060 587 aaPredicted RBP16.57■□□□□ 0.24
CPNE4-209ENST00000512055 APLP2Q06481 763 aa16.56■□□□□ 0.24
CPNE4-209ENST00000512055 ZCCHC6Q5VYS8 1495 aaKnown RBP16.49■□□□□ 0.23
CPNE4-209ENST00000512055 PPARGC1BQ86YN6 1023 aaKnown RBP16.48■□□□□ 0.23
CPNE4-209ENST00000512055 UBTFP17480 764 aaKnown RBP16.46■□□□□ 0.23
CPNE4-209ENST00000512055 CCDC180Q9P1Z9 1646 aa16.34■□□□□ 0.21
CPNE4-209ENST00000512055 PABPN1Q86U42 306 aaKnown RBP eCLIP16.34■□□□□ 0.21
CPNE4-209ENST00000512055 TRIM26Q12899 539 aaPredicted RBP16.3■□□□□ 0.2
CPNE4-209ENST00000512055 ZEB1P37275 1124 aaPredicted RBP16.24■□□□□ 0.19
CPNE4-209ENST00000512055 HRCP23327 699 aa16.24■□□□□ 0.19
CPNE4-209ENST00000512055 NEFLP07196 543 aa16.23■□□□□ 0.19
CPNE4-209ENST00000512055 YTHDC1Q96MU7 727 aaKnown RBP16.23■□□□□ 0.19
CPNE4-209ENST00000512055 ATP1B4Q9UN42 357 aaPredicted RBP16.18■□□□□ 0.18
CPNE4-209ENST00000512055 SCRIBQ14160 1630 aa16.18■□□□□ 0.18
CPNE4-209ENST00000512055 DAXXQ9UER7 740 aaPredicted RBP16.05■□□□□ 0.16
CPNE4-209ENST00000512055 HNRNPUL2Q1KMD3 747 aaKnown RBP15.92■□□□□ 0.14
CPNE4-209ENST00000512055 RTL5Q5HYW3 569 aaPredicted RBP15.91■□□□□ 0.14
CPNE4-209ENST00000512055 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.9■□□□□ 0.14
CPNE4-209ENST00000512055 ITGAEP38570 1179 aa15.88■□□□□ 0.13
CPNE4-209ENST00000512055 MYO15BQ96JP2 1530 aa15.85■□□□□ 0.13
CPNE4-209ENST00000512055 RSF1Q96T23 1441 aaPredicted RBP15.81■□□□□ 0.12
CPNE4-209ENST00000512055 CSRNP3Q8WYN3 585 aa15.74■□□□□ 0.11
CPNE4-209ENST00000512055 DCAF1Q9Y4B6 1507 aa15.73■□□□□ 0.11
CPNE4-209ENST00000512055 EIF5BO60841 1220 aaKnown RBP15.71■□□□□ 0.1
CPNE4-209ENST00000512055 RB1CC1Q8TDY2 1594 aa15.66■□□□□ 0.1
CPNE4-209ENST00000512055 NACADO15069 1562 aa15.66■□□□□ 0.1
CPNE4-209ENST00000512055 ZNF316A6NFI3 1004 aaPredicted RBP15.62■□□□□ 0.09
CPNE4-209ENST00000512055 CECR2Q9BXF3 1484 aa15.61■□□□□ 0.09
CPNE4-209ENST00000512055 DIEXFQ68CQ4 756 aaKnown RBP15.53■□□□□ 0.08
CPNE4-209ENST00000512055 FAM50AQ14320 339 aaKnown RBP15.53■□□□□ 0.08
CPNE4-209ENST00000512055 GLIPR1L2Q4G1C9 344 aa15.52■□□□□ 0.08
CPNE4-209ENST00000512055 P3H3Q8IVL6 736 aa15.49■□□□□ 0.07
CPNE4-209ENST00000512055 MROH2BQ7Z745 1585 aa15.41■□□□□ 0.06
CPNE4-209ENST00000512055 BAZ1AQ9NRL2 1556 aaPredicted RBP15.39■□□□□ 0.05
CPNE4-209ENST00000512055 CLSPNQ9HAW4 1339 aa15.37■□□□□ 0.05
CPNE4-209ENST00000512055 NEUROD1Q13562 356 aa15.37■□□□□ 0.05
CPNE4-209ENST00000512055 ARID3CA6NKF2 412 aa15.31■□□□□ 0.04
CPNE4-209ENST00000512055 POLR3GLQ9BT43 218 aa15.31■□□□□ 0.04
CPNE4-209ENST00000512055 WRNQ14191 1432 aaPredicted RBP eCLIP15.31■□□□□ 0.04
CPNE4-209ENST00000512055 BAZ1BQ9UIG0 1483 aaKnown RBP15.3■□□□□ 0.04
CPNE4-209ENST00000512055 FBLN2P98095 1184 aa15.3■□□□□ 0.04
CPNE4-209ENST00000512055 CNGB1Q14028 1251 aaPredicted RBP15.28■□□□□ 0.04
CPNE4-209ENST00000512055 CEP162Q5TB80 1403 aa15.28■□□□□ 0.04
CPNE4-209ENST00000512055 TRIM52Q96A61 297 aa15.27■□□□□ 0.03
CPNE4-209ENST00000512055 CLIP1P30622 1438 aa15.25■□□□□ 0.03
CPNE4-209ENST00000512055 MYT1LQ9UL68 1186 aa15.24■□□□□ 0.03
CPNE4-209ENST00000512055 WIZO95785 1651 aa15.23■□□□□ 0.03
CPNE4-209ENST00000512055 CCDC88BA6NC98 1476 aa15.22■□□□□ 0.03
CPNE4-209ENST00000512055 BCANQ96GW7 911 aa15.21■□□□□ 0.03
CPNE4-209ENST00000512055 SOGA1O94964 1423 aa15.21■□□□□ 0.03
CPNE4-209ENST00000512055 EEA1Q15075 1411 aa15.21■□□□□ 0.02
CPNE4-209ENST00000512055 GOLGA3Q08378 1498 aa15.2■□□□□ 0.02
CPNE4-209ENST00000512055 ABCC8Q09428 1581 aa15.19■□□□□ 0.02
CPNE4-209ENST00000512055 GTF3C3Q9Y5Q9 886 aa15.17■□□□□ 0.02
CPNE4-209ENST00000512055 TNIKQ9UKE5 1360 aa15.16■□□□□ 0.02
CPNE4-209ENST00000512055 CEP164Q9UPV0 1460 aa15.08■□□□□ 0.01
CPNE4-209ENST00000512055 CDK11AQ9UQ88 783 aaPredicted RBP15.08■□□□□ 0
CPNE4-209ENST00000512055 ZNF326Q5BKZ1 582 aaKnown RBP15.06■□□□□ 0
CPNE4-209ENST00000512055 TOP2AP11388 1531 aaKnown RBP15.04■□□□□ -0
CPNE4-209ENST00000512055 KIF27Q86VH2 1401 aa15.04■□□□□ -0
CPNE4-209ENST00000512055 ZNF777Q9ULD5 760 aaPredicted RBP15.04■□□□□ -0
CPNE4-209ENST00000512055 ACIN1Q9UKV3 1341 aaKnown RBP15.03■□□□□ -0
CPNE4-209ENST00000512055 CHIC2Q9UKJ5 165 aa14.99□□□□□ -0.01
CPNE4-209ENST00000512055 ANP32CO43423 234 aa14.98□□□□□ -0.01
CPNE4-209ENST00000512055 SMARCA4P51532 1647 aa14.98□□□□□ -0.01
CPNE4-209ENST00000512055 ANP32BQ92688 251 aaKnown RBP14.95□□□□□ -0.02
CPNE4-209ENST00000512055 SMARCA2P51531 1590 aa14.94□□□□□ -0.02
CPNE4-209ENST00000512055 MTUS2Q5JR59 1369 aa14.94□□□□□ -0.02
CPNE4-209ENST00000512055 ANP32AP39687 249 aaKnown RBP14.92□□□□□ -0.02
CPNE4-209ENST00000512055 ATAD2BQ9ULI0 1458 aa14.91□□□□□ -0.02
CPNE4-209ENST00000512055 RUSC2Q8N2Y8 1516 aa14.9□□□□□ -0.02
CPNE4-209ENST00000512055 DDX10Q13206 875 aaKnown RBP14.9□□□□□ -0.02
CPNE4-209ENST00000512055 TONSLQ96HA7 1378 aa14.9□□□□□ -0.02
CPNE4-209ENST00000512055 CUX2O14529 1486 aa14.9□□□□□ -0.02
CPNE4-209ENST00000512055 MIER1Q8N108 512 aa14.89□□□□□ -0.03
CPNE4-209ENST00000512055 HIRIP3Q9BW71 556 aaPredicted RBP14.87□□□□□ -0.03
CPNE4-209ENST00000512055 NPM2Q86SE8 214 aaKnown RBP14.86□□□□□ -0.03
CPNE4-209ENST00000512055 CHMP7Q8WUX9 453 aaPredicted RBP14.86□□□□□ -0.03
CPNE4-209ENST00000512055 CARMIL1Q5VZK9 1371 aa14.85□□□□□ -0.03
CPNE4-209ENST00000512055 KANK4Q5T7N3 995 aaPredicted RBP14.83□□□□□ -0.03
CPNE4-209ENST00000512055 SLC4A1APQ9BWU0 796 aaKnown RBP14.83□□□□□ -0.03
CPNE4-209ENST00000512055 RRP7BPQ9NSQ0 103 aa14.83□□□□□ -0.03
CPNE4-209ENST00000512055 VPS8Q8N3P4 1428 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms