RNA–Protein interactions for RNA: ENST00000505998.5

NIPBL-205, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 5

Gene NIPBL, Length 969 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-205ENST00000505998 CRISPLD2Q9H0B8 497 aa13.78□□□□□ -0.2
NIPBL-205ENST00000505998 C3orf67Q6ZVT6 689 aa13.76□□□□□ -0.21
NIPBL-205ENST00000505998 TMC2Q8TDI7 906 aa13.75□□□□□ -0.21
NIPBL-205ENST00000505998 GPHNQ9NQX3 736 aaPredicted RBP13.73□□□□□ -0.21
NIPBL-205ENST00000505998 DDX27Q96GQ7 796 aaKnown RBP13.72□□□□□ -0.21
NIPBL-205ENST00000505998 MFSD10Q14728 455 aa13.71□□□□□ -0.21
NIPBL-205ENST00000505998 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.69□□□□□ -0.22
NIPBL-205ENST00000505998 C2orf72A6NCS6 295 aa13.68□□□□□ -0.22
NIPBL-205ENST00000505998 POTEB2H3BUK9 544 aa13.67□□□□□ -0.22
NIPBL-205ENST00000505998 PPP1R15BQ5SWA1 713 aa13.66□□□□□ -0.22
NIPBL-205ENST00000505998 TMEM92Q6UXU6 159 aa13.66□□□□□ -0.22
NIPBL-205ENST00000505998 P3H3Q8IVL6 736 aa13.66□□□□□ -0.22
NIPBL-205ENST00000505998 KIF3CO14782 793 aa13.65□□□□□ -0.22
NIPBL-205ENST00000505998 E2F4Q16254 413 aa13.65□□□□□ -0.22
NIPBL-205ENST00000505998 FOXK1P85037 733 aa13.64□□□□□ -0.23
NIPBL-205ENST00000505998 DSG2Q14126 1118 aa13.64□□□□□ -0.23
NIPBL-205ENST00000505998 POTEJP0CG39 1038 aa13.63□□□□□ -0.23
NIPBL-205ENST00000505998 MAMSTRQ6ZN01 415 aa13.61□□□□□ -0.23
NIPBL-205ENST00000505998 KCNV2Q8TDN2 545 aa13.61□□□□□ -0.23
NIPBL-205ENST00000505998 PLPP6Q8IY26 295 aa13.6□□□□□ -0.23
NIPBL-205ENST00000505998 SCUBE2Q9NQ36 999 aa13.6□□□□□ -0.23
NIPBL-205ENST00000505998 BCANQ96GW7 911 aa13.58□□□□□ -0.24
NIPBL-205ENST00000505998 CAMK2BQ13554 666 aa13.56□□□□□ -0.24
NIPBL-205ENST00000505998 NBR1Q14596 966 aa13.54□□□□□ -0.24
NIPBL-205ENST00000505998 SLAIN1Q8ND83 568 aa13.52□□□□□ -0.25
NIPBL-205ENST00000505998 ARHGEF1Q92888 912 aaKnown RBP13.52□□□□□ -0.25
NIPBL-205ENST00000505998 LHX8Q68G74 356 aa13.49□□□□□ -0.25
NIPBL-205ENST00000505998 EMILIN3Q9NT22 766 aa13.47□□□□□ -0.25
NIPBL-205ENST00000505998 ARIH1Q9Y4X5 557 aaPredicted RBP13.45□□□□□ -0.26
NIPBL-205ENST00000505998 UPF1Q92900 1129 aaKnown RBP eCLIP13.44□□□□□ -0.26
NIPBL-205ENST00000505998 DPYSL4O14531 572 aa13.42□□□□□ -0.26
NIPBL-205ENST00000505998 OTUD5Q96G74 571 aa13.42□□□□□ -0.26
NIPBL-205ENST00000505998 MAP3K9P80192 1104 aa13.41□□□□□ -0.26
NIPBL-205ENST00000505998 SLC34A2O95436 690 aa13.39□□□□□ -0.27
NIPBL-205ENST00000505998 OXER1Q8TDS5 423 aa13.39□□□□□ -0.27
NIPBL-205ENST00000505998 TBC1D12O60347 775 aa13.38□□□□□ -0.27
NIPBL-205ENST00000505998 PTCD2Q8WV60 388 aaKnown RBP13.37□□□□□ -0.27
NIPBL-205ENST00000505998 DOK7Q18PE1 504 aa13.36□□□□□ -0.27
NIPBL-205ENST00000505998 SPDYE16A6NNV3 312 aaPredicted RBP13.35□□□□□ -0.27
NIPBL-205ENST00000505998 SEMA3EO15041 775 aa13.33□□□□□ -0.28
NIPBL-205ENST00000505998 SNPHO15079 494 aa13.33□□□□□ -0.28
NIPBL-205ENST00000505998 PDIA6Q15084 440 aa13.33□□□□□ -0.28
NIPBL-205ENST00000505998 RIMBP2O15034 1052 aa13.32□□□□□ -0.28
NIPBL-205ENST00000505998 HOXB3P14651 431 aaPredicted RBP13.32□□□□□ -0.28
NIPBL-205ENST00000505998 PCDHGA4Q9Y5G9 962 aa13.31□□□□□ -0.28
NIPBL-205ENST00000505998 ZNF316A6NFI3 1004 aaPredicted RBP13.3□□□□□ -0.28
NIPBL-205ENST00000505998 ZNF710Q8N1W2 664 aa13.29□□□□□ -0.28
NIPBL-205ENST00000505998 TULP1O00294 542 aaPredicted RBP13.28□□□□□ -0.28
NIPBL-205ENST00000505998 EVI5O60447 810 aa13.28□□□□□ -0.28
NIPBL-205ENST00000505998 TESPA1A2RU30 521 aaPredicted RBP13.27□□□□□ -0.29
NIPBL-205ENST00000505998 ZSWIM6Q9HCJ5 1215 aa13.27□□□□□ -0.29
NIPBL-205ENST00000505998 SMYD5Q6GMV2 418 aa13.25□□□□□ -0.29
NIPBL-205ENST00000505998 ARSIQ5FYB1 569 aa13.23□□□□□ -0.29
NIPBL-205ENST00000505998 MLLT3P42568 568 aaPredicted RBP13.21□□□□□ -0.29
NIPBL-205ENST00000505998 GPR153Q6NV75 609 aa13.21□□□□□ -0.29
NIPBL-205ENST00000505998 KHSRPQ92945 711 aaKnown RBP eCLIP13.2□□□□□ -0.31e-6■■■□□ 18.1
NIPBL-205ENST00000505998 ANO8Q9HCE9 1232 aaPredicted RBP13.2□□□□□ -0.3
NIPBL-205ENST00000505998 GRXCR2A6NFK2 248 aa13.19□□□□□ -0.3
NIPBL-205ENST00000505998 NUDT7P0C024 238 aa13.19□□□□□ -0.3
NIPBL-205ENST00000505998 PTGER2P43116 358 aa13.18□□□□□ -0.3
NIPBL-205ENST00000505998 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.17□□□□□ -0.3
NIPBL-205ENST00000505998 DDX12PQ92771 950 aa13.17□□□□□ -0.3
NIPBL-205ENST00000505998 LMOD2Q6P5Q4 547 aa13.16□□□□□ -0.3
NIPBL-205ENST00000505998 KDM4FA0A1W2PPD8 638 aa13.15□□□□□ -0.3
NIPBL-205ENST00000505998 HOXB1P14653 301 aaPredicted RBP13.14□□□□□ -0.31
NIPBL-205ENST00000505998 PHF14O94880 888 aa13.09□□□□□ -0.31
NIPBL-205ENST00000505998 OSBPP22059 807 aa13.08□□□□□ -0.32
NIPBL-205ENST00000505998 RBM26Q5T8P6 1007 aaKnown RBP13.08□□□□□ -0.32
NIPBL-205ENST00000505998 EPAS1Q99814 870 aa13.08□□□□□ -0.32
NIPBL-205ENST00000505998 LHX6Q9UPM6 363 aa13.08□□□□□ -0.32
NIPBL-205ENST00000505998 ST18O60284 1047 aa13.07□□□□□ -0.32
NIPBL-205ENST00000505998 TPRNQ4KMQ1 711 aa13.07□□□□□ -0.32
NIPBL-205ENST00000505998 JPH4Q96JJ6 628 aa13.07□□□□□ -0.32
NIPBL-205ENST00000505998 ZNF454Q8N9F8 522 aa13.06□□□□□ -0.32
NIPBL-205ENST00000505998 FAM163AQ96GL9 167 aaPredicted RBP13.06□□□□□ -0.32
NIPBL-205ENST00000505998 PCDHGA10Q9Y5H3 936 aa13.06□□□□□ -0.32
NIPBL-205ENST00000505998 FOSBP53539 338 aa13.05□□□□□ -0.32
NIPBL-205ENST00000505998 TYW1BQ6NUM6 668 aa13.05□□□□□ -0.32
NIPBL-205ENST00000505998 PSDA5PKW4 1024 aaPredicted RBP13.03□□□□□ -0.32
NIPBL-205ENST00000505998 FBXW7Q969H0 707 aa13.02□□□□□ -0.33
NIPBL-205ENST00000505998 GPIHBP1Q8IV16 184 aa13.01□□□□□ -0.33
NIPBL-205ENST00000505998 RBM33Q96EV2 1170 aaKnown RBP13.01□□□□□ -0.33
NIPBL-205ENST00000505998 NUTM2FA1L443 756 aa13□□□□□ -0.33
NIPBL-205ENST00000505998 MAP3K7O43318 606 aa13□□□□□ -0.33
NIPBL-205ENST00000505998 EN1Q05925 392 aaPredicted RBP13□□□□□ -0.33
NIPBL-205ENST00000505998 PPP4R3BQ5MIZ7 849 aa13□□□□□ -0.33
NIPBL-205ENST00000505998 ZDHHC16Q969W1 377 aa13□□□□□ -0.33
NIPBL-205ENST00000505998 PRIM1P49642 420 aaKnown RBP12.99□□□□□ -0.33
NIPBL-205ENST00000505998 EMP3P54852 163 aa12.99□□□□□ -0.33
NIPBL-205ENST00000505998 ERBB3P21860 1342 aa12.98□□□□□ -0.33
NIPBL-205ENST00000505998 PRKCSHP14314 528 aaPredicted RBP12.98□□□□□ -0.33
NIPBL-205ENST00000505998 ZC3H15Q8WU90 426 aaKnown RBP12.97□□□□□ -0.33
NIPBL-205ENST00000505998 MARVELD3Q96A59 401 aa12.97□□□□□ -0.33
NIPBL-205ENST00000505998 ADAM33Q9BZ11 813 aa12.94□□□□□ -0.34
NIPBL-205ENST00000505998 TSR1Q2NL82 804 aaKnown RBP12.92□□□□□ -0.34
NIPBL-205ENST00000505998 VARS2Q5ST30 1063 aaKnown RBP12.92□□□□□ -0.34
NIPBL-205ENST00000505998 C6orf132Q5T0Z8 1188 aa12.92□□□□□ -0.34
NIPBL-205ENST00000505998 FCHSD2O94868 740 aa12.91□□□□□ -0.34
NIPBL-205ENST00000505998 FAM205CA6NFA0 338 aa12.9□□□□□ -0.34
NIPBL-205ENST00000505998 LCE2DQ5TA82 110 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms