RNA–Protein interactions for RNA: ENST00000498708.1

SPTA1-209, Transcript of spectrin alpha, erythrocytic 1, humanhuman

TSL 3

Gene SPTA1, Length 600 nt, Biotype retained intron, Subcellular localisation Cytosol, Dendrite .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1-209ENST00000498708 FBXO3Q9UK99 471 aa10.31□□□□□ -0.76
SPTA1-209ENST00000498708 ABCA10Q8WWZ4 1543 aa10.31□□□□□ -0.76
SPTA1-209ENST00000498708 LHX8Q68G74 356 aa10.3□□□□□ -0.76
SPTA1-209ENST00000498708 PPRC1Q5VV67 1664 aaKnown RBP10.3□□□□□ -0.76
SPTA1-209ENST00000498708 COL17A1Q9UMD9 1497 aaPredicted RBP10.3□□□□□ -0.76
SPTA1-209ENST00000498708 FHAD1B1AJZ9 1412 aa10.26□□□□□ -0.77
SPTA1-209ENST00000498708 CCDC61Q9Y6R9 512 aa10.26□□□□□ -0.77
SPTA1-209ENST00000498708 DISP3Q9P2K9 1392 aa10.23□□□□□ -0.77
SPTA1-209ENST00000498708 RASEFQ8IZ41 740 aa10.22□□□□□ -0.77
SPTA1-209ENST00000498708 MS4A3Q96HJ5 214 aa10.21□□□□□ -0.77
SPTA1-209ENST00000498708 KIF12Q96FN5 646 aa10.2□□□□□ -0.78
SPTA1-209ENST00000498708 TOP2BQ02880 1626 aa10.19□□□□□ -0.78
SPTA1-209ENST00000498708 GLI2P10070 1586 aa10.19□□□□□ -0.78
SPTA1-209ENST00000498708 RUSC2Q8N2Y8 1516 aa10.19□□□□□ -0.78
SPTA1-209ENST00000498708 ASXL2Q76L83 1435 aa10.17□□□□□ -0.78
SPTA1-209ENST00000498708 NUBP1P53384 320 aa10.17□□□□□ -0.78
SPTA1-209ENST00000498708 TTBK1Q5TCY1 1321 aaPredicted RBP10.16□□□□□ -0.78
SPTA1-209ENST00000498708 ASTLQ6HA08 431 aaPredicted RBP10.16□□□□□ -0.78
SPTA1-209ENST00000498708 FAM212AQ96EL1 285 aa10.16□□□□□ -0.78
SPTA1-209ENST00000498708 ERICH3Q5RHP9 1530 aa10.16□□□□□ -0.78
SPTA1-209ENST00000498708 WRNQ14191 1432 aaPredicted RBP eCLIP10.15□□□□□ -0.79
SPTA1-209ENST00000498708 MAP3K4Q9Y6R4 1608 aa10.14□□□□□ -0.79
SPTA1-209ENST00000498708 PLB1Q6P1J6 1458 aa10.13□□□□□ -0.79
SPTA1-209ENST00000498708 CUL7Q14999 1698 aa10.12□□□□□ -0.79
SPTA1-209ENST00000498708 MAP3K13O43283 966 aa10.12□□□□□ -0.79
SPTA1-209ENST00000498708 ATMINO43313 823 aaPredicted RBP10.12□□□□□ -0.79
SPTA1-209ENST00000498708 SGIP1Q9BQI5 828 aa10.12□□□□□ -0.79
SPTA1-209ENST00000498708 ABCC2Q92887 1545 aa10.12□□□□□ -0.79
SPTA1-209ENST00000498708 PTPRGP23470 1445 aa10.11□□□□□ -0.79
SPTA1-209ENST00000498708 VASPP50552 380 aaPredicted RBP10.11□□□□□ -0.79
SPTA1-209ENST00000498708 CERKQ8TCT0 537 aa10.11□□□□□ -0.79
SPTA1-209ENST00000498708 EPRSP07814 1512 aaKnown RBP10.11□□□□□ -0.79
SPTA1-209ENST00000498708 KIF21BO75037 1637 aa10.11□□□□□ -0.79
SPTA1-209ENST00000498708 C7P10643 843 aa10.1□□□□□ -0.79
SPTA1-209ENST00000498708 PELP1Q8IZL8 1130 aaKnown RBP10.1□□□□□ -0.79
SPTA1-209ENST00000498708 SLC39A7Q92504 469 aa10.1□□□□□ -0.79
SPTA1-209ENST00000498708 PTPRMP28827 1452 aa10.09□□□□□ -0.79
SPTA1-209ENST00000498708 TEX14Q8IWB6 1497 aa10.09□□□□□ -0.79
SPTA1-209ENST00000498708 TIE1P35590 1138 aa10.07□□□□□ -0.8
SPTA1-209ENST00000498708 KLHL34Q8N239 644 aa10.07□□□□□ -0.8
SPTA1-209ENST00000498708 METRNQ9UJH8 293 aa10.07□□□□□ -0.8
SPTA1-209ENST00000498708 KIAA0586Q9BVV6 1533 aa10.07□□□□□ -0.8
SPTA1-209ENST00000498708 PCF11O94913 1555 aaKnown RBP10.06□□□□□ -0.8
SPTA1-209ENST00000498708 PCDHB13Q9Y5F0 798 aa10.06□□□□□ -0.8
SPTA1-209ENST00000498708 SPATA31D1Q6ZQQ2 1576 aa10.05□□□□□ -0.8
SPTA1-209ENST00000498708 HSPA2P54652 639 aa10.05□□□□□ -0.8
SPTA1-209ENST00000498708 DCAF8Q5TAQ9 597 aa10.05□□□□□ -0.8
SPTA1-209ENST00000498708 ADAMTSL3P82987 1691 aa10.05□□□□□ -0.8
SPTA1-209ENST00000498708 BIVM-ERCC5R4GMW8 1640 aa10.04□□□□□ -0.8
SPTA1-209ENST00000498708 ATN1P54259 1190 aaPredicted RBP10.04□□□□□ -0.8
SPTA1-209ENST00000498708 BMP2KQ9NSY1 1161 aaPredicted RBP10.04□□□□□ -0.8
SPTA1-209ENST00000498708 TNIKQ9UKE5 1360 aa10.03□□□□□ -0.8
SPTA1-209ENST00000498708 UHRF1BP1LA0JNW5 1464 aa10.03□□□□□ -0.8
SPTA1-209ENST00000498708 UACAQ9BZF9 1416 aa10.01□□□□□ -0.81
SPTA1-209ENST00000498708 TRPC6Q9Y210 931 aa10.01□□□□□ -0.81
SPTA1-209ENST00000498708 ZCCHC11Q5TAX3 1644 aaKnown RBP10□□□□□ -0.81
SPTA1-209ENST00000498708 KDM5BQ9UGL1 1544 aa10□□□□□ -0.81
SPTA1-209ENST00000498708 TTLL13PA6NNM8 815 aa9.99□□□□□ -0.81
SPTA1-209ENST00000498708 GSE1Q14687 1217 aa9.99□□□□□ -0.81
SPTA1-209ENST00000498708 IFNL1Q8IU54 200 aa9.99□□□□□ -0.81
SPTA1-209ENST00000498708 MADDQ8WXG6 1647 aa9.98□□□□□ -0.81
SPTA1-209ENST00000498708 POTEB2H3BUK9 544 aa9.98□□□□□ -0.81
SPTA1-209ENST00000498708 MAGI3Q5TCQ9 1506 aa9.97□□□□□ -0.81
SPTA1-209ENST00000498708 MAMSTRQ6ZN01 415 aa9.97□□□□□ -0.81
SPTA1-209ENST00000498708 OTUD5Q96G74 571 aa9.97□□□□□ -0.81
SPTA1-209ENST00000498708 CARMIL2Q6F5E8 1435 aa9.97□□□□□ -0.81
SPTA1-209ENST00000498708 CD109Q6YHK3 1445 aa9.97□□□□□ -0.81
SPTA1-209ENST00000498708 SUPT5HO00267 1087 aaKnown RBP9.96□□□□□ -0.82
SPTA1-209ENST00000498708 BCORL1Q5H9F3 1711 aa9.96□□□□□ -0.82
SPTA1-209ENST00000498708 PYGBP11216 843 aa9.95□□□□□ -0.82
SPTA1-209ENST00000498708 IER5LQ5T953 404 aa9.95□□□□□ -0.82
SPTA1-209ENST00000498708 KCNH8Q96L42 1107 aa9.95□□□□□ -0.82
SPTA1-209ENST00000498708 WDR7Q9Y4E6 1490 aa9.95□□□□□ -0.82
SPTA1-209ENST00000498708 CFAP43Q8NDM7 1665 aa9.94□□□□□ -0.82
SPTA1-209ENST00000498708 IGF1RP08069 1367 aa9.94□□□□□ -0.82
SPTA1-209ENST00000498708 RIMS1Q86UR5 1692 aaKnown RBP9.93□□□□□ -0.82
SPTA1-209ENST00000498708 SEC24BO95487 1268 aa9.93□□□□□ -0.82
SPTA1-209ENST00000498708 TMEM106CQ9BVX2 250 aa9.93□□□□□ -0.82
SPTA1-209ENST00000498708 TRIM35Q9UPQ4 493 aa9.93□□□□□ -0.82
SPTA1-209ENST00000498708 DISP1Q96F81 1524 aa9.92□□□□□ -0.82
SPTA1-209ENST00000498708 ARID4BQ4LE39 1312 aaPredicted RBP9.92□□□□□ -0.82
SPTA1-209ENST00000498708 SPOCK2Q92563 424 aa9.92□□□□□ -0.82
SPTA1-209ENST00000498708 ARAP3Q8WWN8 1544 aa9.92□□□□□ -0.82
SPTA1-209ENST00000498708 RAPGEF3O95398 923 aa9.9□□□□□ -0.82
SPTA1-209ENST00000498708 IFNLR1Q8IU57 520 aaPredicted RBP9.9□□□□□ -0.82
SPTA1-209ENST00000498708 CHRM1P11229 460 aaPredicted RBP9.89□□□□□ -0.83
SPTA1-209ENST00000498708 ZNF467Q7Z7K2 595 aaPredicted RBP9.89□□□□□ -0.83
SPTA1-209ENST00000498708 SCUBE2Q9NQ36 999 aa9.89□□□□□ -0.83
SPTA1-209ENST00000498708 IQGAP2Q13576 1575 aa9.88□□□□□ -0.83
SPTA1-209ENST00000498708 POTEJP0CG39 1038 aa9.87□□□□□ -0.83
SPTA1-209ENST00000498708 POTEFA5A3E0 1075 aa9.86□□□□□ -0.83
SPTA1-209ENST00000498708 PCDHB8Q9UN66 801 aa9.86□□□□□ -0.83
SPTA1-209ENST00000498708 STRCQ7RTU9 1775 aa9.86□□□□□ -0.83
SPTA1-209ENST00000498708 COLQQ9Y215 455 aaPredicted RBP9.85□□□□□ -0.83
SPTA1-209ENST00000498708 CARMIL1Q5VZK9 1371 aa9.84□□□□□ -0.83
SPTA1-209ENST00000498708 CIZ1Q9ULV3 898 aaPredicted RBP9.83□□□□□ -0.84
SPTA1-209ENST00000498708 FRMPD1Q5SYB0 1578 aa9.83□□□□□ -0.84
SPTA1-209ENST00000498708 PLCG2P16885 1265 aa9.82□□□□□ -0.84
SPTA1-209ENST00000498708 KIAA0556O60303 1618 aa9.82□□□□□ -0.84
SPTA1-209ENST00000498708 KIF27Q86VH2 1401 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms